* using log directory ‘/data/blackswan/ripley/R/packages/tests-vg/VDA.Rcheck’ * using R Under development (unstable) (2019-03-05 r76199) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using options ‘--use-valgrind --no-stop-on-test-error’ * checking for file ‘VDA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘VDA’ version ‘1.3’ * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘VDA’ can be installed ... OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking contents of ‘data’ directory ... OK * checking compiled code ... OK * checking examples ... ERROR Running examples in ‘VDA-Ex.R’ failed The error most likely occurred in: > ### Name: cv.vda.le > ### Title: Choose the optimal pair of lambdas, lambda_1 and lambda_2 > ### Aliases: cv.vda.le cv.vda.le.default > > ### ** Examples > > ### load zoo data > ### column 1 is name, columns 2:17 are features, column 18 is class > data(zoo) > > ### feature matrix > x <- zoo[,2:17] > > ### class vector > y <- zoo[,18] > > ### lambda vector > lam1 <- (1:5)/100 > lam2 <- (1:5)/100 > > ### Searching for the best pair, using both lasso and euclidean penalizations > cv <- cv.vda.le(x, y, kfold = 3, lam.vec.1 = exp(1:5)/10000, lam.vec.2 = (1:5)/100) ==37889== Invalid read of size 8 ==37889== at 0x1B0623BD: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:567) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== Address 0x170cea90 is 0 bytes after a block of size 240 alloc'd ==37889== at 0x4C2EE3B: malloc (/builddir/build/BUILD/valgrind-3.14.0/coregrind/m_replacemalloc/vg_replace_malloc.c:309) ==37889== by 0x1B062185: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:532) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== ==37889== Invalid read of size 8 ==37889== at 0x1B0623D3: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:567) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== Address 0x170cea98 is 8 bytes after a block of size 240 alloc'd ==37889== at 0x4C2EE3B: malloc (/builddir/build/BUILD/valgrind-3.14.0/coregrind/m_replacemalloc/vg_replace_malloc.c:309) ==37889== by 0x1B062185: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:532) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== ==37889== Invalid read of size 8 ==37889== at 0x1B062A99: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:688) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== Address 0x170cea90 is 0 bytes after a block of size 240 alloc'd ==37889== at 0x4C2EE3B: malloc (/builddir/build/BUILD/valgrind-3.14.0/coregrind/m_replacemalloc/vg_replace_malloc.c:309) ==37889== by 0x1B062185: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:532) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== ==37889== Invalid read of size 8 ==37889== at 0x1B062AB3: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:688) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== Address 0x170cea98 is 8 bytes after a block of size 240 alloc'd ==37889== at 0x4C2EE3B: malloc (/builddir/build/BUILD/valgrind-3.14.0/coregrind/m_replacemalloc/vg_replace_malloc.c:309) ==37889== by 0x1B062185: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:532) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== ==37889== Conditional jump or move depends on uninitialised value(s) ==37889== at 0x1B062B98: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:696) ==37889== by 0x1B06499B: vda_le_ (packages/tests-vg/VDA/src/VDA.f90:762) ==37889== by 0x4977A7: do_dotCode (svn/R-devel/src/main/dotcode.c:1772) ==37889== by 0x4C8AAF: bcEval (svn/R-devel/src/main/eval.c:6771) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== by 0x4DA51E: R_execClosure (svn/R-devel/src/main/eval.c:1780) ==37889== by 0x4DB274: Rf_applyClosure (svn/R-devel/src/main/eval.c:1706) ==37889== by 0x516369: dispatchMethod.isra.5 (svn/R-devel/src/main/objects.c:436) ==37889== by 0x516765: Rf_usemethod (svn/R-devel/src/main/objects.c:486) ==37889== by 0x516AA4: do_usemethod (svn/R-devel/src/main/objects.c:565) ==37889== by 0x4C88E2: bcEval (svn/R-devel/src/main/eval.c:6791) ==37889== by 0x4D896F: Rf_eval (svn/R-devel/src/main/eval.c:620) ==37889== Uninitialised value was created by a stack allocation ==37889== at 0x1B062049: __mm_discriminant_MOD_cyclic_euclidean_vda (packages/tests-vg/VDA/src/VDA.f90:490) ==37889== Error in if (sumcoeff[j] != 0) { : missing value where TRUE/FALSE needed Calls: cv.vda.le -> cv.vda.le.default -> vda.le -> vda.le.default Execution halted ==37889== ==37889== HEAP SUMMARY: ==37889== in use at exit: 100,047,782 bytes in 26,568 blocks ==37889== total heap usage: 80,658 allocs, 54,090 frees, 180,177,967 bytes allocated ==37889== ==37889== LEAK SUMMARY: ==37889== definitely lost: 0 bytes in 0 blocks ==37889== indirectly lost: 0 bytes in 0 blocks ==37889== possibly lost: 0 bytes in 0 blocks ==37889== still reachable: 100,047,782 bytes in 26,568 blocks ==37889== suppressed: 0 bytes in 0 blocks ==37889== Reachable blocks (those to which a pointer was found) are not shown. ==37889== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==37889== ==37889== For counts of detected and suppressed errors, rerun with: -v ==37889== ERROR SUMMARY: 486 errors from 5 contexts (suppressed: 0 from 0) * DONE Status: 1 ERROR