==1835651== Memcheck, a memory error detector ==1835651== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==1835651== Using Valgrind-3.24.0 and LibVEX; rerun with -h for copyright info ==1835651== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R -f run_unitTests.R --restore --save --no-readline --vanilla ==1835651== R Under development (unstable) (2026-04-14 r89878) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require("S4Vectors") || stop("unable to load S4Vectors package") Loading required package: S4Vectors Loading required package: stats4 Loading required package: BiocGenerics Loading required package: generics Attaching package: 'generics' The following objects are masked from 'package:base': as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname [1] TRUE > S4Vectors:::.test() ==1835651== Invalid read of size 4 ==1835651== at 0x183A84DC: Rle_integer_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:305) ==1835651== by 0x183A8D38: Rle_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:491) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x20e01cfc is 3,436 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E6E: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2872) ==1835651== by 0x4DF7B5: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x4DF7B5: R_bcEncode (svn/R-devel/src/main/eval.c:8745) ==1835651== by 0x59A21D: ReadBC1 (svn/R-devel/src/main/serialize.c:2213) ==1835651== by 0x59A36E: ReadBCConsts (svn/R-devel/src/main/serialize.c:2183) ==1835651== by 0x59A36E: ReadBC1 (svn/R-devel/src/main/serialize.c:2214) ==1835651== by 0x5993DD: ReadBC (svn/R-devel/src/main/serialize.c:2225) ==1835651== by 0x5993DD: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2056) ==1835651== by 0x598B7B: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1863) ==1835651== by 0x598B7B: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x5983DC: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x5983DC: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1837) ==1835651== by 0x5983DC: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x5983DC: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x5983DC: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1837) ==1835651== by 0x5983DC: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x598AF4: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x598AF4: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1826) ==1835651== by 0x598AF4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x59AABB: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x59AABB: R_Unserialize (svn/R-devel/src/main/serialize.c:2277) ==1835651== ==1835651== Invalid read of size 4 ==1835651== at 0x183A9557: Rle_real_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:693) ==1835651== by 0x183A976F: Rle_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:757) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x21e497cc is 396 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E6E: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2872) ==1835651== by 0x5B4DD9: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x5B4DD9: logicalSubscript (svn/R-devel/src/main/subscript.c:669) ==1835651== by 0x5BAE18: VectorSubset (svn/R-devel/src/main/subset.c:211) ==1835651== by 0x5BAE18: do_subset_dflt (svn/R-devel/src/main/subset.c:861) ==1835651== by 0x4DB63B: VECSUBSET_PTR (svn/R-devel/src/main/eval.c:6367) ==1835651== by 0x4E849E: bcEval_loop (svn/R-devel/src/main/eval.c:8357) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F6DA6: applyClosure_core (svn/R-devel/src/main/eval.c:2302) ==1835651== by 0x4F4475: Rf_applyClosure (svn/R-devel/src/main/eval.c:2324) ==1835651== by 0x4F4475: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==1835651== ==1835651== Invalid read of size 4 ==1835651== at 0x183A9096: Rle_integer_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:571) ==1835651== by 0x183A97A8: Rle_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:754) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x20e01cfc is 3,436 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E6E: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2872) ==1835651== by 0x4DF7B5: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x4DF7B5: R_bcEncode (svn/R-devel/src/main/eval.c:8745) ==1835651== by 0x59A21D: ReadBC1 (svn/R-devel/src/main/serialize.c:2213) ==1835651== by 0x59A36E: ReadBCConsts (svn/R-devel/src/main/serialize.c:2183) ==1835651== by 0x59A36E: ReadBC1 (svn/R-devel/src/main/serialize.c:2214) ==1835651== by 0x5993DD: ReadBC (svn/R-devel/src/main/serialize.c:2225) ==1835651== by 0x5993DD: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2056) ==1835651== by 0x598B7B: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1863) ==1835651== by 0x598B7B: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x5983DC: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x5983DC: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1837) ==1835651== by 0x5983DC: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x5983DC: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x5983DC: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1837) ==1835651== by 0x5983DC: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x598AF4: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x598AF4: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1826) ==1835651== by 0x598AF4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x59AABB: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x59AABB: R_Unserialize (svn/R-devel/src/main/serialize.c:2277) ==1835651== ==1835651== Invalid read of size 4 ==1835651== at 0x183A9123: Rle_integer_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:616) ==1835651== by 0x183A97A8: Rle_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:754) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x1c022bdc is 1,852 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E6E: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2872) ==1835651== by 0x5990D0: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x5990D0: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2036) ==1835651== by 0x5983DC: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x5983DC: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1837) ==1835651== by 0x5983DC: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x599714: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x599714: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2107) ==1835651== by 0x599FC7: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x599FC7: ReadBCLang (svn/R-devel/src/main/serialize.c:2166) ==1835651== by 0x59A0C4: ReadBCLang (svn/R-devel/src/main/serialize.c:2156) ==1835651== by 0x59A0E7: ReadBCLang (svn/R-devel/src/main/serialize.c:2158) ==1835651== by 0x59A0E7: ReadBCLang (svn/R-devel/src/main/serialize.c:2158) ==1835651== by 0x59A0C4: ReadBCLang (svn/R-devel/src/main/serialize.c:2156) ==1835651== by 0x59A0E7: ReadBCLang (svn/R-devel/src/main/serialize.c:2158) ==1835651== ==1835651== Invalid read of size 4 ==1835651== at 0x183A95EA: Rle_real_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:737) ==1835651== by 0x183A976F: Rle_runq (packages/tests-vg/S4Vectors/src/Rle_utils.c:757) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x15756584 is 4,036 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E89: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2717) ==1835651== by 0x4D7116: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x4D7116: Rf_ScalarInteger (svn/R-devel/src/include/Rinlinedfuns.h:1025) ==1835651== by 0x4D7116: GETSTACK_PTR_TAG (svn/R-devel/src/main/eval.c:4785) ==1835651== by 0x4EDC20: bcEval_loop (svn/R-devel/src/main/eval.c:8041) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== ==1835651== Invalid read of size 4 ==1835651== at 0x183A855F: Rle_integer_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:348) ==1835651== by 0x183A8D38: Rle_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:491) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x20c8c144 is 3,588 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E6E: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2872) ==1835651== by 0x598D64: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x598D64: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2021) ==1835651== by 0x59A2A3: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x59A2A3: ReadBCConsts (svn/R-devel/src/main/serialize.c:2197) ==1835651== by 0x59A2A3: ReadBC1 (svn/R-devel/src/main/serialize.c:2214) ==1835651== by 0x59A36E: ReadBCConsts (svn/R-devel/src/main/serialize.c:2183) ==1835651== by 0x59A36E: ReadBC1 (svn/R-devel/src/main/serialize.c:2214) ==1835651== by 0x5993DD: ReadBC (svn/R-devel/src/main/serialize.c:2225) ==1835651== by 0x5993DD: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2056) ==1835651== by 0x598B7B: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1863) ==1835651== by 0x598B7B: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) ==1835651== by 0x598CF4: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x598CF4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2051) ==1835651== by 0x598CF4: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x598CF4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2051) ==1835651== by 0x59AABB: ReadItem (svn/R-devel/src/main/serialize.c:2120) ==1835651== by 0x59AABB: R_Unserialize (svn/R-devel/src/main/serialize.c:2277) ==1835651== by 0x59ACF1: R_unserialize (svn/R-devel/src/main/serialize.c:3006) ==1835651== ==1835651== Invalid read of size 4 ==1835651== at 0x183A8A11: Rle_real_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:428) ==1835651== by 0x183A8CFF: Rle_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:494) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x21dbadf0 is 1,888 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E6E: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2872) ==1835651== by 0x5B4FC3: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x5B4FC3: negativeSubscript (svn/R-devel/src/main/subscript.c:712) ==1835651== by 0x5B4FC3: integerSubscript (svn/R-devel/src/main/subscript.c:772) ==1835651== by 0x5BAE18: VectorSubset (svn/R-devel/src/main/subset.c:211) ==1835651== by 0x5BAE18: do_subset_dflt (svn/R-devel/src/main/subset.c:861) ==1835651== by 0x4DB63B: VECSUBSET_PTR (svn/R-devel/src/main/eval.c:6367) ==1835651== by 0x4E849E: bcEval_loop (svn/R-devel/src/main/eval.c:8357) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F6DA6: applyClosure_core (svn/R-devel/src/main/eval.c:2302) ==1835651== by 0x4F4475: Rf_applyClosure (svn/R-devel/src/main/eval.c:2324) ==1835651== by 0x4F4475: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==1835651== ==1835651== Invalid read of size 4 ==1835651== at 0x183A8A60: Rle_real_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:472) ==1835651== by 0x183A8CFF: Rle_runwtsum (packages/tests-vg/S4Vectors/src/Rle_utils.c:494) ==1835651== by 0x4A8FF1: R_doDotCall (svn/R-devel/src/main/dotcode.c:763) ==1835651== by 0x4A9563: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F70EA: R_execMethod (svn/R-devel/src/main/eval.c:2558) ==1835651== by 0x48BAA10: R_dispatchGeneric (svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154) ==1835651== by 0x5416AA: do_standardGeneric (svn/R-devel/src/main/objects.c:1348) ==1835651== by 0x4EE5D1: bcEval_loop (svn/R-devel/src/main/eval.c:8067) ==1835651== Address 0x21dbadf0 is 1,888 bytes inside a block of size 7,960 alloc'd ==1835651== at 0x4843866: malloc (/builddir/build/BUILD/valgrind-3.24.0/coregrind/m_replacemalloc/vg_replace_malloc.c:446) ==1835651== by 0x536D6E: GetNewPage (svn/R-devel/src/main/memory.c:998) ==1835651== by 0x538E6E: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2872) ==1835651== by 0x5B4FC3: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:609) ==1835651== by 0x5B4FC3: negativeSubscript (svn/R-devel/src/main/subscript.c:712) ==1835651== by 0x5B4FC3: integerSubscript (svn/R-devel/src/main/subscript.c:772) ==1835651== by 0x5BAE18: VectorSubset (svn/R-devel/src/main/subset.c:211) ==1835651== by 0x5BAE18: do_subset_dflt (svn/R-devel/src/main/subset.c:861) ==1835651== by 0x4DB63B: VECSUBSET_PTR (svn/R-devel/src/main/eval.c:6367) ==1835651== by 0x4E849E: bcEval_loop (svn/R-devel/src/main/eval.c:8357) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7515) ==1835651== by 0x4F4037: bcEval (svn/R-devel/src/main/eval.c:7500) ==1835651== by 0x4F436A: Rf_eval (svn/R-devel/src/main/eval.c:1167) ==1835651== by 0x4F60ED: R_execClosure (svn/R-devel/src/main/eval.c:2389) ==1835651== by 0x4F6DA6: applyClosure_core (svn/R-devel/src/main/eval.c:2302) ==1835651== by 0x4F4475: Rf_applyClosure (svn/R-devel/src/main/eval.c:2324) ==1835651== by 0x4F4475: Rf_eval (svn/R-devel/src/main/eval.c:1280) ==1835651== Loading required package: Seqinfo RUNIT TEST PROTOCOL -- Wed Apr 15 18:06:52 2026 *********************************************** Number of test functions: 74 Number of errors: 0 Number of failures: 0 1 Test Suite : S4Vectors RUnit Tests - 74 test functions, 0 errors, 0 failures Number of test functions: 74 Number of errors: 0 Number of failures: 0 Warning messages: 1: In combineUniqueCols(X, Y, Z, use.names = FALSE) : different values in multiple instances of column 'dup', ignoring this column in DFrame 2 2: In combineUniqueCols(X, Y, Z) : different values for shared rows in multiple instances of column 'dup', ignoring this column in DFrame 2 3: In combineUniqueCols(x, y2) : different values for shared rows in multiple instances of column 'X', ignoring this column in DFrame 2 > > proc.time() user system elapsed 605.417 2.026 609.542 ==1835651== ==1835651== HEAP SUMMARY: ==1835651== in use at exit: 325,864,280 bytes in 68,136 blocks ==1835651== total heap usage: 339,699 allocs, 271,563 frees, 727,147,946 bytes allocated ==1835651== ==1835651== LEAK SUMMARY: ==1835651== definitely lost: 0 bytes in 0 blocks ==1835651== indirectly lost: 0 bytes in 0 blocks ==1835651== possibly lost: 0 bytes in 0 blocks ==1835651== still reachable: 325,864,280 bytes in 68,136 blocks ==1835651== suppressed: 0 bytes in 0 blocks ==1835651== Reachable blocks (those to which a pointer was found) are not shown. ==1835651== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1835651== ==1835651== For lists of detected and suppressed errors, rerun with: -s ==1835651== ERROR SUMMARY: 51 errors from 8 contexts (suppressed: 0 from 0)