* using log directory ‘/data/blackswan/ripley/R/packages/tests-vg/RSiena.Rcheck’ * using R Under development (unstable) (2024-04-14 r86416) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7) GNU Fortran (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * using options ‘--use-valgrind --no-stop-on-test-error’ * checking for file ‘RSiena/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RSiena’ version ‘1.4.7’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘RSiena’ can be installed ... [339s/498s] OK * used C++ compiler: ‘g++ (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)’ * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking examples ... [64m/83m] OK * checking tests ... [56m/56m] OK Running ‘parallel.R’ [56m/56m] Comparing ‘parallel.Rout’ to ‘parallel.Rout.save’ ...1,5d0 < ==3185989== Memcheck, a memory error detector < ==3185989== Copyright (C) 2002-2022, and GNU GPL'd, by Julian Seward et al. < ==3185989== Using Valgrind-3.22.0 and LibVEX; rerun with -h for copyright info < ==3185989== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R -f parallel.R --restore --save --no-readline --vanilla < ==3185989== 493,603d487 < ==3185989== Invalid write of size 4 < ==3185989== at 0x1C43453D: mlMakeChains (packages/tests-vg/RSiena/src/siena07setup.cpp:1069) < ==3185989== by 0x4A470D: R_doDotCall (svn/R-devel/src/main/dotcode.c:790) < ==3185989== by 0x4A4D13: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) < ==3185989== by 0x4DF9AA: bcEval_loop (svn/R-devel/src/main/eval.c:8141) < ==3185989== by 0x4F63CF: bcEval (svn/R-devel/src/main/eval.c:7524) < ==3185989== by 0x4F63CF: bcEval (svn/R-devel/src/main/eval.c:7509) < ==3185989== by 0x4F667A: Rf_eval (svn/R-devel/src/main/eval.c:1167) < ==3185989== by 0x4F857D: R_execClosure (svn/R-devel/src/main/eval.c:2398) < ==3185989== by 0x4F92D6: applyClosure_core (svn/R-devel/src/main/eval.c:2311) < ==3185989== by 0x4F6785: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) < ==3185989== by 0x4F6785: Rf_eval (svn/R-devel/src/main/eval.c:1285) < ==3185989== by 0x4FB39C: do_set (svn/R-devel/src/main/eval.c:3582) < ==3185989== by 0x4F6A22: Rf_eval (svn/R-devel/src/main/eval.c:1237) < ==3185989== by 0x4FB530: Rf_evalList (svn/R-devel/src/main/eval.c:3680) < ==3185989== Address 0x1affe00c is 3,676 bytes inside a block of size 7,960 alloc'd < ==3185989== at 0x484280F: malloc (/builddir/build/BUILD/valgrind-3.22.0/coregrind/m_replacemalloc/vg_replace_malloc.c:442) < ==3185989== by 0x535770: GetNewPage (svn/R-devel/src/main/memory.c:998) < ==3185989== by 0x5374BB: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2862) < ==3185989== by 0x595022: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:595) < ==3185989== by 0x595022: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2017) < ==3185989== by 0x596427: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x596427: ReadBC1 (svn/R-devel/src/main/serialize.c:2206) < ==3185989== by 0x5965E6: ReadBCConsts (svn/R-devel/src/main/serialize.c:2179) < ==3185989== by 0x5965E6: ReadBC1 (svn/R-devel/src/main/serialize.c:2210) < ==3185989== by 0x5955A3: ReadBC (svn/R-devel/src/main/serialize.c:2221) < ==3185989== by 0x5955A3: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2052) < ==3185989== by 0x594E4C: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1863) < ==3185989== by 0x594E4C: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) < ==3185989== by 0x594FB4: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x594FB4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2047) < ==3185989== by 0x594FB4: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x594FB4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2047) < ==3185989== by 0x596A2B: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x596A2B: R_Unserialize (svn/R-devel/src/main/serialize.c:2273) < ==3185989== by 0x597C78: R_unserialize (svn/R-devel/src/main/serialize.c:2995) < ==3185989== < ==3185989== Invalid write of size 4 < ==3185989== at 0x1C434589: mlMakeChains (packages/tests-vg/RSiena/src/siena07setup.cpp:1072) < ==3185989== by 0x4A470D: R_doDotCall (svn/R-devel/src/main/dotcode.c:790) < ==3185989== by 0x4A4D13: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) < ==3185989== by 0x4DF9AA: bcEval_loop (svn/R-devel/src/main/eval.c:8141) < ==3185989== by 0x4F63CF: bcEval (svn/R-devel/src/main/eval.c:7524) < ==3185989== by 0x4F63CF: bcEval (svn/R-devel/src/main/eval.c:7509) < ==3185989== by 0x4F667A: Rf_eval (svn/R-devel/src/main/eval.c:1167) < ==3185989== by 0x4F857D: R_execClosure (svn/R-devel/src/main/eval.c:2398) < ==3185989== by 0x4F92D6: applyClosure_core (svn/R-devel/src/main/eval.c:2311) < ==3185989== by 0x4F6785: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) < ==3185989== by 0x4F6785: Rf_eval (svn/R-devel/src/main/eval.c:1285) < ==3185989== by 0x4FB39C: do_set (svn/R-devel/src/main/eval.c:3582) < ==3185989== by 0x4F6A22: Rf_eval (svn/R-devel/src/main/eval.c:1237) < ==3185989== by 0x4FB530: Rf_evalList (svn/R-devel/src/main/eval.c:3680) < ==3185989== Address 0x1affe1cc is 4,124 bytes inside a block of size 7,960 alloc'd < ==3185989== at 0x484280F: malloc (/builddir/build/BUILD/valgrind-3.22.0/coregrind/m_replacemalloc/vg_replace_malloc.c:442) < ==3185989== by 0x535770: GetNewPage (svn/R-devel/src/main/memory.c:998) < ==3185989== by 0x5374BB: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2862) < ==3185989== by 0x595022: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:595) < ==3185989== by 0x595022: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2017) < ==3185989== by 0x596427: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x596427: ReadBC1 (svn/R-devel/src/main/serialize.c:2206) < ==3185989== by 0x5965E6: ReadBCConsts (svn/R-devel/src/main/serialize.c:2179) < ==3185989== by 0x5965E6: ReadBC1 (svn/R-devel/src/main/serialize.c:2210) < ==3185989== by 0x5955A3: ReadBC (svn/R-devel/src/main/serialize.c:2221) < ==3185989== by 0x5955A3: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2052) < ==3185989== by 0x594E4C: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1863) < ==3185989== by 0x594E4C: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) < ==3185989== by 0x594FB4: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x594FB4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2047) < ==3185989== by 0x594FB4: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x594FB4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2047) < ==3185989== by 0x596A2B: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x596A2B: R_Unserialize (svn/R-devel/src/main/serialize.c:2273) < ==3185989== by 0x597C78: R_unserialize (svn/R-devel/src/main/serialize.c:2995) < ==3185989== < ==3185989== Invalid write of size 4 < ==3185989== at 0x1C43459D: mlMakeChains (packages/tests-vg/RSiena/src/siena07setup.cpp:1073) < ==3185989== by 0x4A470D: R_doDotCall (svn/R-devel/src/main/dotcode.c:790) < ==3185989== by 0x4A4D13: do_dotcall (svn/R-devel/src/main/dotcode.c:1437) < ==3185989== by 0x4DF9AA: bcEval_loop (svn/R-devel/src/main/eval.c:8141) < ==3185989== by 0x4F63CF: bcEval (svn/R-devel/src/main/eval.c:7524) < ==3185989== by 0x4F63CF: bcEval (svn/R-devel/src/main/eval.c:7509) < ==3185989== by 0x4F667A: Rf_eval (svn/R-devel/src/main/eval.c:1167) < ==3185989== by 0x4F857D: R_execClosure (svn/R-devel/src/main/eval.c:2398) < ==3185989== by 0x4F92D6: applyClosure_core (svn/R-devel/src/main/eval.c:2311) < ==3185989== by 0x4F6785: Rf_applyClosure (svn/R-devel/src/main/eval.c:2333) < ==3185989== by 0x4F6785: Rf_eval (svn/R-devel/src/main/eval.c:1285) < ==3185989== by 0x4FB39C: do_set (svn/R-devel/src/main/eval.c:3582) < ==3185989== by 0x4F6A22: Rf_eval (svn/R-devel/src/main/eval.c:1237) < ==3185989== by 0x4FB530: Rf_evalList (svn/R-devel/src/main/eval.c:3680) < ==3185989== Address 0x1affe15c is 4,012 bytes inside a block of size 7,960 alloc'd < ==3185989== at 0x484280F: malloc (/builddir/build/BUILD/valgrind-3.22.0/coregrind/m_replacemalloc/vg_replace_malloc.c:442) < ==3185989== by 0x535770: GetNewPage (svn/R-devel/src/main/memory.c:998) < ==3185989== by 0x5374BB: Rf_allocVector3 (svn/R-devel/src/main/memory.c:2862) < ==3185989== by 0x595022: Rf_allocVector (svn/R-devel/src/include/Rinlinedfuns.h:595) < ==3185989== by 0x595022: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2017) < ==3185989== by 0x596427: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x596427: ReadBC1 (svn/R-devel/src/main/serialize.c:2206) < ==3185989== by 0x5965E6: ReadBCConsts (svn/R-devel/src/main/serialize.c:2179) < ==3185989== by 0x5965E6: ReadBC1 (svn/R-devel/src/main/serialize.c:2210) < ==3185989== by 0x5955A3: ReadBC (svn/R-devel/src/main/serialize.c:2221) < ==3185989== by 0x5955A3: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2052) < ==3185989== by 0x594E4C: ReadItem_Iterative (svn/R-devel/src/main/serialize.c:1863) < ==3185989== by 0x594E4C: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:1963) < ==3185989== by 0x594FB4: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x594FB4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2047) < ==3185989== by 0x594FB4: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x594FB4: ReadItem_Recursive (svn/R-devel/src/main/serialize.c:2047) < ==3185989== by 0x596A2B: ReadItem (svn/R-devel/src/main/serialize.c:2116) < ==3185989== by 0x596A2B: R_Unserialize (svn/R-devel/src/main/serialize.c:2273) < ==3185989== by 0x597C78: R_unserialize (svn/R-devel/src/main/serialize.c:2995) < ==3185989== 926,946d809 < > proc.time() < user system elapsed < 3332.456 3.857 3352.902 < ==3185989== < ==3185989== HEAP SUMMARY: < ==3185989== in use at exit: 210,839,976 bytes in 56,544 blocks < ==3185989== total heap usage: 23,880,492 allocs, 23,823,948 frees, 2,118,954,105 bytes allocated < ==3185989== < ==3185989== LEAK SUMMARY: < ==3185989== definitely lost: 0 bytes in 0 blocks < ==3185989== indirectly lost: 0 bytes in 0 blocks < ==3185989== possibly lost: 0 bytes in 0 blocks < ==3185989== still reachable: 210,839,976 bytes in 56,544 blocks < ==3185989== of which reachable via heuristic: < ==3185989== newarray : 300,016 bytes in 152 blocks < ==3185989== suppressed: 0 bytes in 0 blocks < ==3185989== Reachable blocks (those to which a pointer was found) are not shown. < ==3185989== To see them, rerun with: --leak-check=full --show-leak-kinds=all < ==3185989== < ==3185989== For lists of detected and suppressed errors, rerun with: -s < ==3185989== ERROR SUMMARY: 3 errors from 3 contexts (suppressed: 0 from 0) * DONE Status: OK