==150197== Memcheck, a memory error detector ==150197== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==150197== Using Valgrind-3.16.1 and LibVEX; rerun with -h for copyright info ==150197== Command: /data/blackswan/ripley/R/R-devel-vg/bin/exec/R -f testthat.R --restore --save --no-readline --vanilla ==150197== R Under development (unstable) (2021-07-20 r80643) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(OpenABMCovid19) Loading required package: R6 > > test_check("OpenABMCovid19") ==150197== Warning: set address range perms: large range [0x79771040, 0x8d613d78) (defined) ==150197== Warning: set address range perms: large range [0x9ab84040, 0xaea26d78) (defined) ==150197== Warning: set address range perms: large range [0xaea27040, 0xc28c9d78) (defined) ==150197== Warning: set address range perms: large range [0xc28ca040, 0xd676cd78) (defined) ==150197== Warning: set address range perms: large range [0xd676d040, 0xea60fd78) (defined) ==150197== Warning: set address range perms: large range [0xea610040, 0xfe4b2d78) (defined) ==150197== Warning: set address range perms: large range [0xfe4b3040, 0x112355d78) (defined) ==150197== Warning: set address range perms: large range [0x112356040, 0x1261f8d78) (defined) ==150197== Warning: set address range perms: large range [0x1261f9040, 0x13a09bd78) (defined) ==150197== Warning: set address range perms: large range [0x13a09c040, 0x14df3ed78) (defined) ==150197== Warning: set address range perms: large range [0x79771028, 0x8d613d90) (noaccess) ==150197== Warning: set address range perms: large range [0x9ab84028, 0xaea26d90) (noaccess) ==150197== Warning: set address range perms: large range [0xaea27028, 0xc28c9d90) (noaccess) ==150197== Warning: set address range perms: large range [0xc28ca028, 0xd676cd90) (noaccess) ==150197== Warning: set address range perms: large range [0xd676d028, 0xea60fd90) (noaccess) ==150197== Warning: set address range perms: large range [0xea610028, 0xfe4b2d90) (noaccess) ==150197== Warning: set address range perms: large range [0xfe4b3028, 0x112355d90) (noaccess) ==150197== Warning: set address range perms: large range [0x112356028, 0x1261f8d90) (noaccess) ==150197== Warning: set address range perms: large range [0x1261f9028, 0x13a09bd90) (noaccess) ==150197== Warning: set address range perms: large range [0x13a09c028, 0x14df3ed90) (noaccess) ==150197== Invalid read of size 8 ==150197== at 0x483EDA7: memcpy@GLIBC_2.2.5 (/builddir/build/BUILD/valgrind-3.16.1/memcheck/../shared/vg_replace_strmem.c:1032) ==150197== by 0x16FACD66: R_swig_parameters_input_household_file_set (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:9549) ==150197== by 0x49D37B: R_doDotCall (svn/R-devel/src/main/dotcode.c:604) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3067: do_begin (svn/R-devel/src/main/eval.c:2530) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== Address 0x1afff6c0 is 2 bytes after a block of size 14 alloc'd ==150197== at 0x483A809: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:307) ==150197== by 0x16FA31DA: SWIG_strdup (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:1386) ==150197== by 0x16FACD47: R_swig_parameters_input_household_file_set (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:9548) ==150197== by 0x49D37B: R_doDotCall (svn/R-devel/src/main/dotcode.c:604) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3067: do_begin (svn/R-devel/src/main/eval.c:2530) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== ==150197== Invalid read of size 8 ==150197== at 0x483EDAF: memcpy@GLIBC_2.2.5 (/builddir/build/BUILD/valgrind-3.16.1/memcheck/../shared/vg_replace_strmem.c:1032) ==150197== by 0x16FACD66: R_swig_parameters_input_household_file_set (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:9549) ==150197== by 0x49D37B: R_doDotCall (svn/R-devel/src/main/dotcode.c:604) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3067: do_begin (svn/R-devel/src/main/eval.c:2530) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== Address 0x1afff6c8 is 10 bytes after a block of size 14 alloc'd ==150197== at 0x483A809: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:307) ==150197== by 0x16FA31DA: SWIG_strdup (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:1386) ==150197== by 0x16FACD47: R_swig_parameters_input_household_file_set (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:9548) ==150197== by 0x49D37B: R_doDotCall (svn/R-devel/src/main/dotcode.c:604) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3067: do_begin (svn/R-devel/src/main/eval.c:2530) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== ==150197== Invalid read of size 8 ==150197== at 0x483ED94: memcpy@GLIBC_2.2.5 (/builddir/build/BUILD/valgrind-3.16.1/memcheck/../shared/vg_replace_strmem.c:1032) ==150197== by 0x16FACD66: R_swig_parameters_input_household_file_set (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:9549) ==150197== by 0x49D37B: R_doDotCall (svn/R-devel/src/main/dotcode.c:604) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3067: do_begin (svn/R-devel/src/main/eval.c:2530) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== Address 0x1afff6d0 is 18 bytes after a block of size 14 alloc'd ==150197== at 0x483A809: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:307) ==150197== by 0x16FA31DA: SWIG_strdup (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:1386) ==150197== by 0x16FACD47: R_swig_parameters_input_household_file_set (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:9548) ==150197== by 0x49D37B: R_doDotCall (svn/R-devel/src/main/dotcode.c:604) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3067: do_begin (svn/R-devel/src/main/eval.c:2530) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== ==150197== Invalid read of size 8 ==150197== at 0x483ED9F: memcpy@GLIBC_2.2.5 (/builddir/build/BUILD/valgrind-3.16.1/memcheck/../shared/vg_replace_strmem.c:1032) ==150197== by 0x16FACD66: R_swig_parameters_input_household_file_set (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:9549) ==150197== by 0x49D37B: R_doDotCall (svn/R-devel/src/main/dotcode.c:604) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3067: do_begin (svn/R-devel/src/main/eval.c:2530) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== by 0x4F0664: Rf_eval (svn/R-devel/src/main/eval.c:815) ==150197== Address 0x1afff6d8 is 24 bytes after a block of size 16 in arena "client" ==150197== The person's house_no must be between 0 and n_households [ FAIL 0 | WARN 0 | SKIP 0 | PASS 92 ] > > proc.time() user system elapsed 790.831 7.439 798.987 ==150197== ==150197== HEAP SUMMARY: ==150197== in use at exit: 169,914,760 bytes in 47,567 blocks ==150197== total heap usage: 18,666,163 allocs, 18,618,596 frees, 6,625,713,580 bytes allocated ==150197== ==150197== 5,016 (16 direct, 5,000 indirect) bytes in 1 blocks are definitely lost in loss record 367 of 2,591 ==150197== at 0x483A809: malloc (/builddir/build/BUILD/valgrind-3.16.1/coregrind/m_replacemalloc/vg_replace_malloc.c:307) ==150197== by 0x172152A7: gsl_rng_alloc (in /usr/lib64/libgsl.so.25.0.0) ==150197== by 0x16FF1686: new_model (packages/tests-vg/OpenABMCovid19/src/model.c:57) ==150197== by 0x16FB9B5E: R_swig_create_model (packages/tests-vg/OpenABMCovid19/src/covid19_wrap_R.c:8092) ==150197== by 0x49D38F: R_doDotCall (svn/R-devel/src/main/dotcode.c:601) ==150197== by 0x49D843: do_dotcall (svn/R-devel/src/main/dotcode.c:1284) ==150197== by 0x4D3706: bcEval (svn/R-devel/src/main/eval.c:7128) ==150197== by 0x4F0217: Rf_eval (svn/R-devel/src/main/eval.c:740) ==150197== by 0x4F1C3D: R_execClosure (svn/R-devel/src/main/eval.c:1910) ==150197== by 0x4F2933: Rf_applyClosure (svn/R-devel/src/main/eval.c:1836) ==150197== by 0x4F03E3: Rf_eval (svn/R-devel/src/main/eval.c:863) ==150197== by 0x4F3519: applydefine (svn/R-devel/src/main/eval.c:2803) ==150197== ==150197== LEAK SUMMARY: ==150197== definitely lost: 16 bytes in 1 blocks ==150197== indirectly lost: 5,000 bytes in 1 blocks ==150197== possibly lost: 0 bytes in 0 blocks ==150197== still reachable: 169,909,744 bytes in 47,565 blocks ==150197== suppressed: 0 bytes in 0 blocks ==150197== Reachable blocks (those to which a pointer was found) are not shown. ==150197== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==150197== ==150197== For lists of detected and suppressed errors, rerun with: -s ==150197== ERROR SUMMARY: 9 errors from 5 contexts (suppressed: 0 from 0)