* using log directory ‘/data/localhost/ripley/R/packages/tests-gcc-SAN/vectra.Rcheck’ * using R Under development (unstable) (2026-10-26 r90764) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-26 14:18:27 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘vectra/DESCRIPTION’ ... OK * this is package ‘vectra’ version ‘0.14.0’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘vectra’ can be installed ... [296s/126s] OK * used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [15s/19s] OK * checking tests ... [20s/24s] ERROR Running ‘testthat.R’ [19s/22s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(vectra) Attaching package: 'vectra' The following object is masked from 'package:stats': filter The following object is masked from 'package:graphics': grid > > test_check("vectra") vtr_codec_tdc.c:618:59: runtime error: signed integer overflow: -6076574518398440533 * -6076574518398440533 cannot be represented in type 'long int' #0 0x7beca3b3041b in vtr_decode_column_tdc_into /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:618 #1 0x7beca3b332a0 in vtr_decode_column_tdc /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:772 #2 0x7beca3b351db in fill_rg_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1506 #3 0x7beca3b35d95 in vtr1_read_rowgroup_tdc_defer /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1556 #4 0x7beca3a72b3c in scan_next_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:962 #5 0x7beca3b2bb3a in vtr_append_node /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:103 #6 0x7beca3b2bcc2 in C_append_vtr /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:174 #7 0x00000075ea6a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x0000009036c7 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #13 0x000000abf856 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #14 0x000000abf856 in applyMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:120 #15 0x000000ac3333 in dispatchMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:473 #16 0x000000ac52e5 in Rf_usemethod.isra.0 /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:513 #17 0x000000ac60a3 in do_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:579 #18 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #19 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #20 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #23 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #25 0x0000007497ba in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #26 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #27 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #28 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #31 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #34 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #35 0x0000008b6359 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #36 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #37 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #38 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #41 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #43 0x0000008b7052 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #44 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #45 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #46 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #49 0x000000897809 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x000000897809 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #51 0x0000004a0207 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #52 0x000000abe611 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #53 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #54 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #55 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #58 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #60 0x000000a24378 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #61 0x000000a24378 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #62 0x000000a4204a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #63 0x000000a420e2 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #64 0x0000004122ff in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #65 0x7fecb2e0a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #66 0x7fecb2e0a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #67 0x000000412cc4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412cc4) (BuildId: 21409b301f8ed474cc909eb64f74629db6cd205c) vtr_codec_tdc.c:618:69: runtime error: index 3 out of bounds for type 'int64_t [3]' #0 0x7beca3b3053a in vtr_decode_column_tdc_into /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:618 #1 0x7beca3b332a0 in vtr_decode_column_tdc /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:772 #2 0x7beca3b351db in fill_rg_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1506 #3 0x7beca3b35d95 in vtr1_read_rowgroup_tdc_defer /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1556 #4 0x7beca3a72b3c in scan_next_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:962 #5 0x7beca3b2bb3a in vtr_append_node /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:103 #6 0x7beca3b2bcc2 in C_append_vtr /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:174 #7 0x00000075ea6a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x0000009036c7 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #13 0x000000abf856 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #14 0x000000abf856 in applyMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:120 #15 0x000000ac3333 in dispatchMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:473 #16 0x000000ac52e5 in Rf_usemethod.isra.0 /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:513 #17 0x000000ac60a3 in do_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:579 #18 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #19 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #20 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #23 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #25 0x0000007497ba in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #26 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #27 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #28 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #31 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #34 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #35 0x0000008b6359 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #36 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #37 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #38 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #41 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #43 0x0000008b7052 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #44 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #45 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #46 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #49 0x000000897809 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x000000897809 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #51 0x0000004a0207 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #52 0x000000abe611 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #53 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #54 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #55 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #58 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #60 0x000000a24378 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #61 0x000000a24378 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #62 0x000000a4204a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #63 0x000000a420e2 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #64 0x0000004122ff in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #65 0x7fecb2e0a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #66 0x7fecb2e0a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #67 0x000000412cc4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412cc4) (BuildId: 21409b301f8ed474cc909eb64f74629db6cd205c) vtr_codec_tdc.c:618:69: runtime error: load of address 0x7becae613280 with insufficient space for an object of type 'int64_t' 0x7becae613280: note: pointer points here ab ab ab ab ca 8f f1 f0 65 8e fa 9d 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7beca3b304e2 in vtr_decode_column_tdc_into /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:618 #1 0x7beca3b332a0 in vtr_decode_column_tdc /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:772 #2 0x7beca3b351db in fill_rg_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1506 #3 0x7beca3b35d95 in vtr1_read_rowgroup_tdc_defer /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1556 #4 0x7beca3a72b3c in scan_next_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:962 #5 0x7beca3b2bb3a in vtr_append_node /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:103 #6 0x7beca3b2bcc2 in C_append_vtr /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:174 #7 0x00000075ea6a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x0000009036c7 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #13 0x000000abf856 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #14 0x000000abf856 in applyMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:120 #15 0x000000ac3333 in dispatchMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:473 #16 0x000000ac52e5 in Rf_usemethod.isra.0 /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:513 #17 0x000000ac60a3 in do_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:579 #18 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #19 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #20 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #23 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #25 0x0000007497ba in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #26 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #27 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #28 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #31 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #34 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #35 0x0000008b6359 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #36 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #37 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #38 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #41 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #43 0x0000008b7052 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #44 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #45 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #46 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #49 0x000000897809 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x000000897809 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #51 0x0000004a0207 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #52 0x000000abe611 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #53 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #54 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #55 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #58 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #60 0x000000a24378 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #61 0x000000a24378 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #62 0x000000a4204a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #63 0x000000a420e2 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #64 0x0000004122ff in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #65 0x7fecb2e0a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #66 0x7fecb2e0a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #67 0x000000412cc4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412cc4) (BuildId: 21409b301f8ed474cc909eb64f74629db6cd205c) ================================================================= ==2198699==ERROR: AddressSanitizer: stack-buffer-overflow on address 0x7becae613280 at pc 0x7beca3b3044d bp 0x7ffeafe3ad40 sp 0x7ffeafe3ad38 READ of size 8 at 0x7becae613280 thread T0 #0 0x7beca3b3044c in vtr_decode_column_tdc_into /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:618 #1 0x7beca3b332a0 in vtr_decode_column_tdc /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:772 #2 0x7beca3b351db in fill_rg_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1506 #3 0x7beca3b35d95 in vtr1_read_rowgroup_tdc_defer /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:1556 #4 0x7beca3a72b3c in scan_next_batch /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:962 #5 0x7beca3b2bb3a in vtr_append_node /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:103 #6 0x7beca3b2bcc2 in C_append_vtr /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_append.c:174 #7 0x00000075ea6a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x0000009036c7 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #13 0x000000abf856 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #14 0x000000abf856 in applyMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:120 #15 0x000000ac3333 in dispatchMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:473 #16 0x000000ac52e5 in Rf_usemethod.isra.0 /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:513 #17 0x000000ac60a3 in do_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:579 #18 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #19 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #20 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #23 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #25 0x0000007497ba in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #26 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #27 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #28 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #31 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #34 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #35 0x0000008b6359 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #36 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #37 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #38 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #41 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #43 0x0000008b7052 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #44 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #45 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #46 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #49 0x000000897809 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x000000897809 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #51 0x0000004a0207 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #52 0x000000abe611 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #53 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #54 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #55 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #58 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #60 0x000000a24378 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #61 0x000000a24378 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #62 0x000000a4204a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #63 0x000000a420e2 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #64 0x0000004122ff in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #65 0x7fecb2e0a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #66 0x7fecb2e0a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #67 0x000000412cc4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412cc4) (BuildId: 21409b301f8ed474cc909eb64f74629db6cd205c) Address 0x7becae613280 is located in stack of thread T0 at offset 128 in frame #0 0x7beca3b2fedf in vtr_decode_column_tdc_into /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:591 This frame has 2 object(s): [48, 128) 'hdr' (line 601) <== Memory access at offset 128 overflows this variable [160, 248) 'dst' (line 604) HINT: this may be a false positive if your program uses some custom stack unwind mechanism, swapcontext or vfork (longjmp and C++ exceptions *are* supported) SUMMARY: AddressSanitizer: stack-buffer-overflow /data/localhost/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:618 in vtr_decode_column_tdc_into Shadow bytes around the buggy address: 0x7becae613000: f1 f1 f1 f1 00 00 00 00 00 f2 f2 f2 f2 f2 00 00 0x7becae613080: 00 00 00 00 00 00 00 00 f2 f2 f2 f2 00 00 00 00 0x7becae613100: 00 00 00 00 00 00 00 f3 f3 f3 f3 f3 f3 f3 f3 f3 0x7becae613180: f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 0x7becae613200: f1 f1 f1 f1 f1 f1 00 00 00 00 00 00 00 00 00 00 =>0x7becae613280:[f2]f2 f2 f2 00 00 00 00 00 00 00 00 00 00 00 f3 0x7becae613300: f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 0x7becae613380: f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 0x7becae613400: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7becae613480: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7becae613500: f5 f5 f5 f5 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 f3 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==2198699==ABORTING * checking package vignettes ... OK * checking re-building of vignette outputs ... [112s/135s] OK * DONE Status: 1 ERROR