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Type 'q()' to quit R. > library(testthat) > library(tulpa) > > test_check("tulpa") square: ok (4 x 4) symmetric: ok zero diag: ok binary: ok isolated: 0 node(s) edges: 3 overall: ok square: ok (4 x 4) symmetric: FAIL zero diag: ok binary: ok isolated: 0 node(s) edges: 3 overall: issues found square: ok (4 x 4) symmetric: ok zero diag: FAIL binary: ok isolated: 0 node(s) edges: 4 overall: issues found square: ok (3 x 3) symmetric: ok zero diag: ok binary: ok isolated: 1 node(s) edges: 1 overall: issues found square: FAIL (2 x 3) overall: issues found square: ok (3 x 3) symmetric: ok zero diag: ok binary: ok isolated: 0 node(s) edges: 2 ids: `ids` length (2) does not match the number of nodes (3). overall: issues found tulpa_draws_array(): this tulpa_fit fit carries no posterior draws. It carries no posterior representation this accessor can read. posterior_sample(): the 'eb' fit carries no posterior draws. It carries a Laplace mode and its precision (`$mode` / `$H_beta`), summarized by summary() / confint(). tulpa_draws_array(): the 'eb' fit carries no posterior draws. It carries a Laplace mode and its precision (`$mode` / `$H_beta`), summarized by summary() / confint(). /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Cholesky/LLT.h:66:49: runtime error: load of value 32119, which is not a valid value for type 'ComputationInfo' #0 0x7b26f85118c6 in Eigen::LLT, 1>::LLT(Eigen::LLT, 1> const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Cholesky/LLT.h:66 #1 0x7b26f85118c6 in tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS::ThreadWS(ThreadWS const&) /data/localhost/ripley/R/packages/tests-gcc-SAN/tulpa/src/hmc_gp_gradients.h:84 #2 0x7b26f85118c6 in void std::_Construct > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS const&>(tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS*, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS const&) /usr/include/c++/16/bits/stl_construct.h:133 #3 0x7b26f85118c6 in tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS* std::__do_uninit_fill_n > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS*, unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS>(tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS*, unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS const&) /usr/include/c++/16/bits/stl_uninitialized.h:492 #4 0x7b26f85118c6 in tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS* std::uninitialized_fill_n > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS*, unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS>(tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS*, unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS const&) /usr/include/c++/16/bits/stl_uninitialized.h:595 #5 0x7b26f85118c6 in tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS* std::__uninitialized_fill_n_a > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS*, unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS>(tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS*, unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS const&, std::allocator > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS>&) /usr/include/c++/16/bits/stl_uninitialized.h:778 #6 0x7b26f85118c6 in std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS, std::allocator > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS> >::_M_fill_initialize(unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS const&) /usr/include/c++/16/bits/stl_vector.h:1990 #7 0x7b26f85118c6 in std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS, std::allocator > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS> >::vector(unsigned long, tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS const&, std::allocator > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double)::ThreadWS> const&) /usr/include/c++/16/bits/stl_vector.h:592 #8 0x7b26f85118c6 in tulpa_gp::gp_nngp_gradients(std::vector > const&, double, double, tulpa::GPData const&, tulpa_gp::NNGPGradients&, double) /data/localhost/ripley/R/packages/tests-gcc-SAN/tulpa/src/hmc_gp_gradients.h:92 #9 0x7b26f85118c6 in cpp_test_gp_solver_dispatch(Rcpp::Vector<14, Rcpp::PreserveStorage>, double, double, Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, int, std::__cxx11::basic_string, std::allocator >, double, int) /data/localhost/ripley/R/packages/tests-gcc-SAN/tulpa/src/test_helpers.cpp:1070 #10 0x7b26f85c42f1 in _tulpa_cpp_test_gp_solver_dispatch /data/localhost/ripley/R/packages/tests-gcc-SAN/tulpa/src/RcppExports.cpp:3540 #11 0x00000075bd71 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000009007c7 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #13 0x0000008d7b7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #14 0x000000877daa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000088e5ba in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x0000008922bd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #17 0x000000878458 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x000000878458 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #19 0x00000088cc1e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #20 0x000000878886 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #21 0x00000088e5ba in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x0000008922bd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #23 0x000000878458 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x000000878458 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #25 0x0000008a6dfe in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #26 0x000000878886 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #27 0x00000088cc1e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #28 0x000000878886 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #29 0x0000008b11c9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #30 0x0000008ecc6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #31 0x0000008d7b7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #32 0x000000877daa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x00000088e5ba in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x0000008922bd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #35 0x000000878458 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x000000878458 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #37 0x0000008b1ec2 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #38 0x0000008ecc6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #39 0x0000008d7b7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #40 0x000000877daa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x00000088e5ba in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x0000008922bd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #43 0x000000894029 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x000000894029 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #45 0x00000049fe97 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #46 0x000000abaff1 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #47 0x0000008f69dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #48 0x0000008d7b7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #49 0x000000877daa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x00000088e5ba in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x0000008922bd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #52 0x000000878458 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x000000878458 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #54 0x000000a20d78 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #55 0x000000a20d78 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #56 0x000000a3ea3a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #57 0x000000a3ead2 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #58 0x000000411f8f in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #59 0x7f2710a0a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #60 0x7f2710a0a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #61 0x000000412954 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412954) (BuildId: ebce40d5109963378e25e663caf03fd60af91fda) Implicit diff: range= -0.157 sigma= -0.535 Finite diff: range= -0.157 sigma= -0.535 posterior_sample(): the 'laplace' fit carries no posterior draws. It carries a Laplace mode and its precision (`$mode` / `$H_beta`), summarized by summary() / confint(). tulpa_draws_array(): the 'laplace' fit carries no posterior draws. It carries a Laplace mode and its precision (`$mode` / `$H_beta`), summarized by summary() / confint(). [nested-laplace] 1/64 cells (2%) | elapsed 0s | ETA >=1s | 0.02s/cells [nested-laplace] 64/64 cells (100%) | elapsed 1s | ETA done | 0.02s/cells [nested-laplace-joint] 1/9 cells (11%) | elapsed 0s | ETA >=0s | 0.01s/cells [nested-laplace-joint] 9/9 cells (100%) | elapsed 0s | ETA done | 0.01s/cells Exact log-det: 65.9224 Stochastic: 66.2145 Relative error: 0.00443 dense SPD exact: 170.6624 stoch: 170.9205 rel_err: 0.00151 N=200 exact: 334.62 stoch: 335.73 rel_err: 0.0033 [nested-laplace] 1/25 cells (4%) | elapsed 0s | ETA >=0s | 0.01s/cells [nested-laplace] 25/25 cells (100%) | elapsed 0s | ETA done | 0.00s/cells [nested-laplace] 1/25 cells (4%) | elapsed 0s | ETA >=0s | 0.01s/cells [nested-laplace] 25/25 cells (100%) | elapsed 0s | ETA done | 0.00s/cells [ FAIL 0 | WARN 15 | SKIP 1029 | PASS 16566 ] ══ Skipped tests (1029) ════════════════════════════════════════════════════════ • On CRAN (835): 'test-aghq-gradient.R:64:7', 'test-aghq-gradient.R:64:7', 'test-aghq-gradient.R:64:7', 'test-agq.R:18:3', 'test-agq.R:49:3', 'test-agq.R:76:3', 'test-agq.R:94:3', 'test-agq.R:121:3', 'test-audit-228-239.R:78:3', 'test-bayes-r2.R:33:3', 'test-bayes-r2.R:57:3', 'test-beta-prior-default.R:84:3', 'test-beta-prior-default.R:103:3', 'test-brasil.R:6:3', 'test-brasil.R:24:3', 'test-brasil.R:33:3', 'test-bridge-sampling.R:12:3', 'test-bridge-sampling.R:42:3', 'test-bridge-sampling.R:85:3', 'test-ccd-interval-support.R:139:3', 'test-ccd-interval-support.R:173:3', 'test-ccd-interval-support.R:196:3', 'test-ccd-interval-support.R:242:3', 'test-cell-coupling-cross-hess.R:63:5', 'test-cell-coupling-cross-hess.R:103:5', 'test-cell-coupling-cross-hess.R:139:5', 'test-cell-coupling-cross-hess.R:174:5', 'test-cell-coupling-cross-hess.R:255:5', 'test-cell-coupling-cross-hess.R:292:5', 'test-cell-coupling-cross-hess.R:341:5', 'test-cell-coupling-cross-hess.R:386:5', 'test-cell-coupling-cross-hess.R:433:5', 'test-cell-coupling-occupancy-mixture.R:187:3', 'test-cell-coupling-occupancy-mixture.R:244:3', 'test-cell-coupling-occupancy-mixture.R:288:3', 'test-cell-coupling-registry.R:19:5', 'test-cell-curvature3.R:45:3', 'test-cell-curvature3.R:67:3', 'test-cell-curvature3.R:84:3', 'test-cell-curvature3.R:93:3', 'test-cell-curvature3.R:140:3', 'test-cell-curvature3.R:160:3', 'test-checkpoint-universal.R:13:1', 'test-cila-parallel.R:46:3', 'test-cila-parallel.R:65:3', 'test-cila-parallel.R:76:3', 'test-cila.R:120:3', 'test-cila.R:141:3', 'test-cila.R:159:3', 'test-cila.R:183:3', 'test-cila.R:206:3', 'test-cila.R:221:3', 'test-cila.R:250:3', 'test-cila.R:286:3', 'test-cila.R:301:3', 'test-cila.R:356:3', 'test-cila.R:379:3', 'test-coupled-indefinite-start.R:65:5', 'test-coupled-indefinite-start.R:86:5', 'test-coupled-indefinite-start.R:108:5', 'test-coupled-indefinite-start.R:125:5', 'test-coupled-indefinite-start.R:149:5', 'test-coupling-force-parallel.R:68:5', 'test-diagnostics-cross-tier.R:34:3', 'test-eb-dispersion.R:38:3', 'test-eb-dispersion.R:54:3', 'test-eb-dispersion.R:72:3', 'test-eb-dispersion.R:88:3', 'test-eb-dispersion.R:102:3', 'test-eb-dispersion.R:139:3', 'test-eb-dispersion.R:155:3', 'test-eb.R:63:3', 'test-eb.R:78:3', 'test-eb.R:90:3', 'test-eb.R:103:3', 'test-eb.R:118:3', 'test-eb.R:142:3', 'test-eb.R:423:3', 'test-eb.R:460:3', 'test-em-laplace-recovery.R:122:3', 'test-em-laplace-recovery.R:169:3', 'test-em-laplace-recovery.R:179:3', 'test-em-mc.R:58:3', 'test-em-mc.R:82:3', 'test-em-nested-block-se.R:8:3', 'test-em-nested-block-se.R:39:3', 'test-ep.R:16:3', 'test-ep.R:37:3', 'test-ep.R:59:3', 'test-ep.R:87:3', 'test-ep.R:103:3', 'test-ep.R:118:3', 'test-family-count-compiled.R:270:3', 'test-family-count-extensions.R:132:3', 'test-family-dispersion.R:372:3', 'test-family-dispersion.R:401:3', 'test-family-truncated-curvature-eb.R:148:3', 'test-family-truncated-curvature-eb.R:153:3', 'test-family-truncated-curvature-eb.R:163:3', 'test-family-truncated-curvature-eb.R:173:3', 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'test-re-aghq-cross-hessian.R:47:3', 'test-re-aghq-cross-hessian.R:88:3', 'test-re-aghq-cross-hessian.R:146:3', 'test-re-aghq-multiarm.R:25:3', 'test-re-aghq-multiarm.R:78:3', 'test-re-aghq-perblock.R:43:3', 'test-re-aghq-perblock.R:65:3', 'test-re-aghq-solve-guards.R:184:3', 'test-re-aghq-solve-guards.R:198:3', 'test-re-aghq-solve-guards.R:213:3', 'test-re-aghq-solve-guards.R:273:3', 'test-re-aghq-solve-guards.R:309:3', 'test-re-aghq.R:25:3', 'test-re-aghq.R:49:3', 'test-re-aghq.R:82:3', 'test-re-aghq.R:149:3', 'test-re-aghq.R:179:3', 'test-re-aghq.R:227:3', 'test-re-cov-gibbs.R:172:3', 'test-re-cov-nested.R:23:3', 'test-re-cov-nested.R:70:3', 'test-re-cov-nested.R:97:3', 'test-re-cov-nested.R:128:3', 'test-re-cov-nested.R:154:3', 'test-re-cov-nested.R:214:3', 'test-re-cov-nested.R:387:3', 'test-re-cov-prior.R:151:3', 'test-re-cov-prior.R:177:3', 'test-reference-mle-beta.R:20:3', 'test-reference-mle-beta.R:38:3', 'test-reference-mle-beta.R:54:3', 'test-reference-mle-count.R:10:3', 'test-reference-mle-count.R:29:3', 'test-reference-mle-count.R:56:3', 'test-reference-mle-count.R:87:3', 'test-reference-mle-count.R:109:3', 'test-reference-mle-re.R:22:3', 'test-reference-mle-re.R:52:3', 'test-reference-mle-re.R:90:3', 'test-reference-mle-re.R:126:3', 'test-reference-mle-zi.R:11:3', 'test-reference-mle-zi.R:40:3', 'test-reference-mle-zi.R:72:3', 'test-reference-mle-zi.R:107:3', 'test-reloo.R:9:3', 'test-reloo.R:27:3', 'test-reloo.R:55:3', 'test-s3-cross-registration.R:66:3', 'test-sample-glmm.R:215:3', 'test-sample-glmm.R:243:3', 'test-sample-glmm.R:276:3', 'test-sample-glmm.R:320:3', 'test-sbc-crps.R:71:3', 'test-sbc-crps.R:113:3', 'test-sbc-crps.R:154:3', 'test-sbc-crps.R:169:3', 'test-sbc-crps.R:195:3', 'test-sbc-crps.R:245:3', 'test-sbc-crps.R:282:3', 'test-sbc-frontdoor.R:305:3', 'test-sghmc-posterior-scale.R:114:3', 'test-sghmc-posterior-scale.R:137:3', 'test-smc-sampler.R:29:1', 'test-smoother-re-integrated.R:44:3', 'test-smoother-re-integrated.R:74:3', 'test-smoother-re-integrated.R:90:3', 'test-smoother-re-integrated.R:120:3', 'test-smoother-re-integrated.R:134:3', 'test-smoother.R:46:3', 'test-smoother.R:72:3', 'test-smoother.R:88:3', 'test-soft-sum-to-zero.R:88:3', 'test-softabs-retry-invariance.R:19:3', 'test-spatial-field-by.R:226:3', 'test-spatial-field.R:135:3', 'test-spatial-mcar.R:49:3', 'test-spatial-mcar.R:104:3', 'test-spatial-mcar.R:151:3', 'test-spatial-proper-car.R:64:3', 'test-spatial-proper-car.R:107:3', 'test-spatial-spde-api.R:52:3', 'test-spatial-spde-api.R:405:3', 'test-spde-ccd.R:36:3', 'test-spde-ccd.R:61:3', 'test-spde-ccd.R:87:3', 'test-spde-ccd.R:124:3', 'test-spde-ccd.R:221:3', 'test-spde-grid-regime.R:9:5', 'test-spde-guards.R:21:1', 'test-spde-kriging.R:9:3', 'test-spde-kriging.R:51:3', 'test-spde-kriging.R:99:3', 'test-spde-nu-general.R:171:3', 'test-spde-nu-general.R:208:3', 'test-spde-rational.R:14:3', 'test-spde-rational.R:35:3', 'test-spde-rational.R:47:3', 'test-spde-rational.R:81:3', 'test-spde-rational.R:89:3', 'test-spde-re.R:28:3', 'test-spde-re.R:42:3', 'test-spde-re.R:58:3', 'test-spde-re.R:73:3', 'test-spde.R:7:3', 'test-spde.R:97:3', 'test-spde.R:140:3', 'test-spde.R:201:3', 'test-spde.R:255:3', 'test-spde.R:315:3', 'test-spde.R:365:3', 'test-spde.R:466:3', 'test-spde.R:487:3', 'test-spde.R:513:3', 'test-spde.R:542:3', 'test-spde.R:568:3', 'test-spde.R:592:3', 'test-spde.R:620:3', 'test-spde.R:645:3', 'test-spde.R:669:3', 'test-st-iv-gmrf-mass.R:46:3', 'test-st-iv-gmrf-mass.R:51:3', 'test-st-iv-gmrf-mass.R:56:3', 'test-st-iv-gmrf-mass.R:61:3', 'test-st-iv-gmrf-mass.R:73:3', 'test-st-iv-gmrf-mass.R:153:3', 'test-st-iv-margin-mass.R:48:3', 'test-st-iv-margin-mass.R:74:3', 'test-st-iv-margin-mass.R:111:3', 'test-st-iv-margin-mass.R:136:3', 'test-st-iv-margin-mass.R:144:3', 'test-st-iv-margin-mass.R:163:3', 'test-st-nested.R:20:3', 'test-st-nested.R:42:3', 'test-subspace-debias-backends.R:89:3', 'test-subspace-debias-backends.R:114:3', 'test-subspace-debias-backends.R:131:3', 'test-subspace-debias-backends.R:170:3', 'test-subspace-debias-backends.R:195:3', 'test-subspace-debias-backends.R:235:3', 'test-subspace-debias-backends.R:261:3', 'test-subspace-debias-backends.R:305:3', 'test-subspace-debias-backends.R:316:3', 'test-subspace-debias-recovery.R:104:3', 'test-support-sample.R:167:3', 'test-svc-fold.R:46:3', 'test-sysmem.R:31:3', 'test-sysmem.R:83:3', 'test-temporal-ar1-rho-prior.R:47:3', 'test-temporal-ar2.R:97:3', 'test-temporal-ar2.R:118:3', 'test-temporal-field.R:72:3', 'test-temporal-field.R:109:3', 'test-temporal-field.R:129:3', 'test-temporal-frontdoor.R:14:3', 'test-temporal-frontdoor.R:30:3', 'test-temporal-frontdoor.R:39:3', 'test-temporal-frontdoor.R:71:3', 'test-temporal-frontdoor.R:86:3', 'test-temporal-frontdoor.R:97:3', 'test-temporal-frontdoor.R:110:3', 'test-temporal-frontdoor.R:140:3', 'test-temporal-frontdoor.R:159:3', 'test-temporal-frontdoor.R:181:3', 'test-temporal-gp-frontdoor.R:37:3', 'test-temporal-gp-frontdoor.R:52:3', 'test-temporal-gp-frontdoor.R:64:3', 'test-temporal-gp-frontdoor.R:90:3', 'test-temporal-gp-frontdoor.R:101:3', 'test-tgmrf-cpp.R:60:3', 'test-tgmrf-cpp.R:108:3', 'test-tgmrf-cpp.R:167:3', 'test-tgmrf-laplace.R:42:3', 'test-tgmrf-laplace.R:117:3', 'test-tgmrf-laplace.R:150:3', 'test-tgmrf-laplace.R:178:3', 'test-tgmrf-vi.R:33:3', 'test-tulpa-agq-frontdoor.R:26:3', 'test-tulpa-agq-frontdoor.R:54:3', 'test-tulpa-agq-frontdoor.R:68:3', 'test-tulpa-entry-nested.R:38:3', 'test-tulpa-entry-nested.R:62:3', 'test-tulpa-entry-nested.R:83:3', 'test-tulpa-entry-nested.R:181:3', 'test-tulpa-entry.R:15:3', 'test-tulpa-entry.R:56:3', 'test-tulpa-entry.R:97:3', 'test-tulpa-entry.R:116:3', 'test-tulpa-entry.R:130:3', 'test-tulpa-entry.R:160:3', 'test-tulpa-re-cov-frontdoor.R:28:3', 'test-tulpa-re-cov-frontdoor.R:57:3', 'test-tulpa-re-cov-frontdoor.R:74:3', 'test-tulpa-re-cov-frontdoor.R:83:3', 'test-tulpa-re-cov-frontdoor.R:118:3', 'test-tulpa-re-cov-frontdoor.R:141:3', 'test-tulpa-spatial-frontdoor.R:33:3', 'test-tulpa-spatial-frontdoor.R:56:3', 'test-tulpa-spatial-frontdoor.R:70:3', 'test-tulpa-spatial-frontdoor.R:85:3', 'test-tulpa-spatial-frontdoor.R:103:3', 'test-tulpa-spatial-frontdoor.R:183:3', 'test-tulpa-spatial-frontdoor.R:222:3', 'test-tulpa-spatial-gp-frontdoor.R:38:3', 'test-tulpa-spatial-gp-frontdoor.R:124:3', 'test-tulpa-spatial-gp-frontdoor.R:213:3', 'test-tulpa-spatial-gp-frontdoor.R:244:3', 'test-tulpa-spatial-spde-frontdoor.R:35:3', 'test-tulpa-spatial-spde-frontdoor.R:62:3', 'test-tulpa-spatial-spde-frontdoor.R:79:3', 'test-tulpa-spatial-spde-frontdoor.R:94:3', 'test-tulpa-spatial-spde-frontdoor.R:118:3', 'test-tulpa-spatial-spde-frontdoor.R:132:3', 'test-tulpa-spatial-spde-frontdoor.R:192:3', 'test-tweedie.R:60:3', 'test-varcorr.R:20:3', 'test-varcorr.R:52:3', 'test-varcorr.R:72:3', 'test-varcorr.R:95:3', 'test-varcorr.R:110:3', 'test-warm-start.R:140:3', 'test-warm-start.R:222:3', 'test-weights.R:8:3', 'test-weights.R:27:3', 'test-weights.R:42:3', 'test-weights.R:89:3', 'test-weights.R:119:3', 'test-within-cell-box-uniform.R:405:3', 'test-within-cell-box-uniform.R:494:3', 'test-zi-fit.R:121:3', 'test-zi-prior.R:105:3', 'test-zi-random-effects.R:87:3', 'test-zi-random-effects.R:175:3', 'test-zi-random-effects.R:208:3', 'test-zi-random-effects.R:246:3', 'test-zi-random-effects.R:264:3', 'test-zi-random-effects.R:278:3', 'test-zi-random-effects.R:301:3', 'test-zi-random-effects.R:376:3', 'test-zi-random-effects.R:764:3', 'test-zi-random-effects.R:793:3' • blocked on gcol33/tulpa#244 (multiscale range prior) (1): 'test-multiscale-gp-noncentered-amplitude.R:65:3' • full-validation tier: set TULPA_SLOW_TESTS=true to run samplers / coverage loops (188): 'test-beta-nuts.R:25:3', 'test-beta-nuts.R:56:3', 'test-car-proper-nuts-frontdoor.R:28:3', 'test-car-proper-nuts-frontdoor.R:41:3', 'test-cell-coupling-recovery.R:64:5', 'test-cell-coupling-recovery.R:98:5', 'test-cell-coupling-recovery.R:141:5', 'test-cell-coupling-recovery.R:174:5', 'test-cell-coupling-recovery.R:212:5', 'test-em-laplace-recovery.R:203:3', 'test-family-ad-nuts.R:14:3', 'test-family-ad-nuts.R:29:3', 'test-family-ad-nuts.R:52:3', 'test-family-ad-nuts.R:68:3', 'test-family-ad-nuts.R:86:3', 'test-fit-methods.R:75:3', 'test-fit-methods.R:139:3', 'test-fit-methods.R:158:3', 'test-gaussian.R:2:3', 'test-gaussian.R:30:3', 'test-gaussian.R:48:3', 'test-generic-sampler.R:2:3', 'test-generic-sampler.R:30:3', 'test-generic-sampler.R:60:3', 'test-generic-sampler.R:88:3', 'test-generic-sampler.R:124:3', 'test-generic-sampler.R:158:3', 'test-generic-sampler.R:183:3', 'test-generic-sampler.R:207:3', 'test-generic-sampler.R:230:3', 'test-generic-sampler.R:261:3', 'test-generic-sampler.R:307:3', 'test-generic-sampler.R:340:3', 'test-generic-sampler.R:384:3', 'test-generic-sampler.R:427:3', 'test-generic-sampler.R:458:3', 'test-gibbs-spatial.R:9:3', 'test-gibbs-spatial.R:57:3', 'test-gibbs-spatial.R:124:3', 'test-gibbs-spatial.R:157:3', 'test-gibbs-spatial.R:202:3', 'test-gibbs-spatial.R:267:3', 'test-gibbs-temporal.R:6:3', 'test-gp-noncentered-amplitude.R:35:3', 'test-gp-nuts-frontdoor.R:20:3', 'test-gp-nuts-frontdoor.R:32:3', 'test-hsgp-nuts-frontdoor.R:18:3', 'test-hsgp-nuts-frontdoor.R:32:3', 'test-inner-skew-correction.R:694:3', 'test-integrator.R:43:3', 'test-integrator.R:69:3', 'test-integrator.R:95:3', 'test-intrinsic-field-intercept-se.R:122:3', 'test-joint-pareto-k-proposal.R:422:5', 'test-joint-pareto-k-proposal.R:469:5', 'test-joint-pareto-k-proposal.R:512:5', 'test-laplace_diagnostics.R:167:3', 'test-multiscale-gp-noncentered-amplitude.R:49:3', 'test-multiscale-gp-noncentered-amplitude.R:123:3', 'test-multiscale-temporal-frontdoor.R:48:3', 'test-multiscale-temporal-frontdoor.R:69:3', 'test-multiscale-temporal-frontdoor.R:86:3', 'test-nested-laplace-joint-ccd-local.R:766:3', 'test-nested-laplace-joint-ccd-local.R:793:3', 'test-nested-laplace-joint-ccd-local.R:1026:3', 'test-nested-laplace-joint-fixed-moments.R:135:3', 'test-nested-laplace-joint-fixed-moments.R:497:3', 'test-nested-laplace-joint-mass-predictor.R:322:3', 'test-nested-laplace-joint-multi-recovery.R:45:1', 'test-nested-laplace-joint-pareto-k.R:184:5', 'test-nested-laplace-joint-pareto-k.R:205:5', 'test-nested-laplace-joint-pareto-k.R:227:5', 'test-nested-laplace-joint-pareto-k.R:249:5', 'test-nested-laplace-joint-pareto-k.R:272:5', 'test-nested-laplace-joint-pareto-k.R:296:5', 'test-nested-laplace-joint-pareto-k.R:322:5', 'test-nested-laplace-joint-pareto-k.R:412:5', 'test-nested-laplace-joint-pareto-k.R:445:5', 'test-nested-laplace-joint-pareto-k.R:471:5', 'test-nested-laplace-joint-pareto-k.R:652:5', 'test-nested-laplace-joint-pareto-k.R:687:5', 'test-nested-laplace-joint-pareto-k.R:703:5', 'test-nested-laplace-joint-pareto-k.R:750:5', 'test-nested-laplace-multi-block.R:159:3', 'test-nested-laplace-occupancy.R:159:3', 'test-nested-laplace-recovery.R:362:3', 'test-nested-laplace-recovery.R:381:3', 'test-nested-laplace-recovery.R:439:3', 'test-nested-laplace-recovery.R:456:3', 'test-nested-laplace-recovery.R:487:3', 'test-nested-laplace-recovery.R:501:3', 'test-nested-laplace-recovery.R:555:3', 'test-nested-laplace-recovery.R:579:3', 'test-nested-laplace-recovery.R:678:3', 'test-nested-laplace-recovery.R:800:3', 'test-nested-laplace-recovery.R:1086:3', 'test-nested-laplace-recovery.R:1129:3', 'test-nested-laplace-spatial-recovery.R:104:3', 'test-nested-laplace-spatial-recovery.R:149:3', 'test-nested-laplace-spatial-recovery.R:170:3', 'test-nested-laplace-spatial-recovery.R:197:3', 'test-nested-laplace-spatial-recovery.R:223:3', 'test-pg-bym2-rho-recovery.R:31:3', 'test-pg-bym2-rho-recovery.R:75:3', 'test-pg-rng.R:21:3', 'test-pg-rng.R:50:3', 'test-posterior-sbc.R:250:3', 'test-posterior-sbc.R:296:3', 'test-ranef-sampler.R:8:3', 'test-ranef-subspace-debias.R:174:3', 'test-rational-spde.R:179:3', 'test-re-cov-gibbs.R:23:3', 'test-re-cov-gibbs.R:39:3', 'test-re-cov-gibbs.R:73:3', 'test-re-cov-gibbs.R:104:3', 'test-re-cov-gibbs.R:131:3', 'test-re-cov-recovery.R:55:3', 'test-re-cov-recovery.R:76:3', 'test-re-cov-recovery.R:112:3', 'test-re-cov-recovery.R:120:3', 'test-re-cov-recovery.R:129:3', 'test-re-cov-recovery.R:152:3', 'test-recovery-assembled.R:17:3', 'test-recovery-assembled.R:70:3', 'test-recovery-assembled.R:111:3', 'test-reference-mle-beta.R:75:3', 'test-sample-glmm-structure.R:11:3', 'test-sample-glmm-structure.R:40:3', 'test-sample-glmm-structure.R:68:3', 'test-sample-glmm-structure.R:101:3', 'test-sample-glmm-structure.R:124:3', 'test-sample-glmm-structure.R:145:3', 'test-sample-glmm.R:10:3', 'test-sample-glmm.R:43:3', 'test-sample-glmm.R:65:3', 'test-sample-glmm.R:90:3', 'test-sample-glmm.R:120:3', 'test-sample-glmm.R:141:3', 'test-sample-glmm.R:156:3', 'test-sample-glmm.R:187:7', 'test-sample-glmm.R:187:7', 'test-sample-glmm.R:297:3', 'test-sampler-mass-matrix.R:84:3', 'test-sbc-crps.R:343:3', 'test-sghmc-posterior-scale.R:33:3', 'test-sghmc-posterior-scale.R:55:3', 'test-sghmc-posterior-scale.R:76:3', 'test-softabs-retry-invariance.R:50:3', 'test-spde-nuts-joint.R:204:3', 'test-spde-nuts-joint.R:262:3', 'test-spde-nuts-joint.R:316:3', 'test-spde-nuts.R:30:3', 'test-spde-nuts.R:75:3', 'test-spde-nuts.R:104:3', 'test-spde-nuts.R:138:3', 'test-spde-nuts.R:173:3', 'test-spde-nuts.R:222:3', 'test-spde-nuts.R:287:3', 'test-spde-nuts.R:331:3', 'test-spde-nuts.R:387:3', 'test-st-iv-gmrf-mass.R:107:3', 'test-st-iv-margin-mass.R:219:3', 'test-subspace-debias-recovery.R:133:3', 'test-subspace-debias-recovery.R:175:3', 'test-support-sample.R:187:3', 'test-svc-noncentered-amplitude.R:53:3', 'test-svc-noncentered-amplitude.R:69:3', 'test-svc-nuts-frontdoor.R:46:3', 'test-svc-nuts-frontdoor.R:57:3', 'test-svc-nuts-frontdoor.R:70:3', 'test-svc-nuts-frontdoor.R:89:3', 'test-svc-nuts-frontdoor.R:103:3', 'test-temporal-frontdoor.R:57:3', 'test-tgmrf-imh.R:29:3', 'test-tgmrf-imh.R:58:3', 'test-tgmrf-nuts-joint.R:19:1', 'test-tgmrf-nuts.R:17:1', 'test-tgmrf-recovery.R:15:1', 'test-tgmrf-vi.R:68:3', 'test-tulpa-entry.R:27:3', 'test-tulpa-entry.R:37:3', 'test-tulpa-entry.R:70:3', 'test-tulpa-entry.R:169:3', 'test-tulpa-entry.R:191:3', 'test-tvc-nuts-frontdoor.R:31:3', 'test-tvc-nuts-frontdoor.R:44:3', 'test-tvc-nuts-frontdoor.R:60:3', 'test-zi-random-effects.R:814:3' • no CUDA device: the batched GPU solve did not run (1): 'test-gpu-nngp.R:114:3' • package sources not available (4): 'test-mode-find.R:146:3', 'test-portable-math.R:93:5', 'test-settings.R:241:5', 'test-settings.R:259:5' [ FAIL 0 | WARN 15 | SKIP 1029 | PASS 16566 ] > > proc.time() user system elapsed 795.196 189.565 950.704