* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/stopdetection.Rcheck’ * using R Under development (unstable) (2025-01-08 r87545) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘stopdetection/DESCRIPTION’ ... OK * this is package ‘stopdetection’ version ‘0.1.2’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘stopdetection’ can be installed ... [13s/14s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [16s/18s] OK * checking tests ... [11s/14s] ERROR Running ‘testthat.R’ [9s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(stopdetection) > > test_check("stopdetection") dists_seq_vec.c:18:14: runtime error: store to misaligned address 0x000000000001 for type 'double', which requires 8 byte alignment 0x000000000001: note: pointer points here #0 0x7ff5b9ad7c82 in R_haversine_seq_vec /tmp/Rtmp7L4zeM/R.INSTALL3c26e770015e06/geodist/src/dists_seq_vec.c:18 #1 0x71a18c in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:757 #2 0x736fd2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #3 0x8b89e4 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8672 #4 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #5 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #6 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #7 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #8 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #9 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #10 0x85f372 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3669 #11 0x83b88c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1251 #12 0x7ff5b96000a1 in dogroups /tmp/RtmpH25wRL/R.INSTALL15cb3835f4f5ee/data.table/src/dogroups.c:259 #13 0x71c869 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:839 #14 0x736fd2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #16 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #17 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0xa4f09b in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0xa4f09b in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #22 0xa53257 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #23 0xf490dd in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #24 0x875902 in tryDispatch /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6073 #25 0x8bb1a9 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8657 #26 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #27 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #29 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #30 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #31 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #32 0xc957e7 in R_DispatchOrEvalSP /data/gannet/ripley/R/svn/R-devel/src/main/subassign.c:1545 #33 0xcd19f4 in do_subset3 /data/gannet/ripley/R/svn/R-devel/src/main/subset.c:1264 #34 0x83b4c6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #35 0x709f96 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573 #36 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #37 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #38 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #40 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #41 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #42 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #43 0x84abc3 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3000 #44 0x83b4c6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #45 0x866d99 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3945 #46 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #47 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #48 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #50 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #51 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #52 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #53 0x867f03 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3963 #54 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #55 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #56 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #58 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #59 0x8645f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #60 0x8645f7 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2460 #61 0x4a8949 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #62 0xa4df1a in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1410 #63 0x8afb5d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8142 #64 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #65 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #67 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #68 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #69 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #70 0x9c4e19 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #71 0x9c4e19 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #72 0x9c631b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #73 0x9d0892 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #74 0x4290cf in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #75 0x7ff5cd02950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #76 0x7ff5cd0295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #77 0x429ab4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x429ab4) (BuildId: b25c18b29da9020de134f39d59f7dee05849d9e9) *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: matrix(.Call("R_haversine_seq_vec", x, y)) 2: geodist_seq_vec(x1, y1, measure, pad) 3: geodist_vec(longitude, latitude, sequential = TRUE, measure = "haversine") 4: `[.data.table`(res, (move_idx), `:=`(raw_travel_dist, sum(geodist_vec(longitude, latitude, sequential = TRUE, measure = "haversine"))), move_id) 5: res[(move_idx), `:=`(raw_travel_dist, sum(geodist_vec(longitude, latitude, sequential = TRUE, measure = "haversine"))), move_id] 6: returnStateEvents(stopFinder(data.table::copy(df), thetaD = 1000, thetaT = 200)) 7: eval_bare(expr, quo_get_env(quo)) 8: quasi_label(enquo(object), label, arg = "object") 9: testthat::expect_equal(returnStateEvents(stopFinder(data.table::copy(df), thetaD = 1000, thetaT = 200))$state_id, 1) 10: eval(code, test_env) 11: eval(code, test_env) 12: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 13: doTryCatch(return(expr), name, parentenv, handler) 14: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 15: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 16: doTryCatch(return(expr), name, parentenv, handler) 17: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 18: tryCatchList(expr, classes, parentenv, handlers) 19: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 20: test_code(desc, code, env = parent.frame(), reporter = reporter) 21: test_that("events are returned when there are no moves", { testthat::expect_equal(returnStateEvents(stopFinder(data.table::copy(df), thetaD = 1000, thetaT = 200))$state_id, 1)}) 22: eval(code, test_env) 23: eval(code, test_env) 24: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 25: doTryCatch(return(expr), name, parentenv, handler) 26: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 27: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 28: doTryCatch(return(expr), name, parentenv, handler) 29: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 30: tryCatchList(expr, classes, parentenv, handlers) 31: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 32: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new()) 33: source_file(path, env = env(env), desc = desc, error_call = error_call) 34: FUN(X[[i]], ...) 35: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 36: doTryCatch(return(expr), name, parentenv, handler) 37: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 38: tryCatchList(expr, classes, parentenv, handlers) 39: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 40: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 41: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 42: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 43: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 44: test_check("stopdetection") An irrecoverable exception occurred. R is aborting now ... * checking package vignettes ... OK * checking re-building of vignette outputs ... [50s/50s] OK * DONE Status: 1 ERROR