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Type 'q()' to quit R. > library(testthat) > library(sommer) Loading required package: Matrix Loading required package: enhancer Loading required package: MASS Loading required package: crayon sommer: No accessible NVIDIA GPU detected; only CPU options are available. > > test_check("sommer") /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:262:26: runtime error: reference binding to null pointer of type 'ScalarWithConstIfNotLvalue' #0 0x7b88534bb277 in Eigen::MapBase, -1, -1, false>, 1>::coeffRef(long, long) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:262 #1 0x7b88534bb277 in Eigen::internal::triangular_solver_selector const, Eigen::Block, -1, -1, false>, 1, 1, 0, -1>::run(Eigen::Matrix const&, Eigen::Block, -1, -1, false>&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102 #2 0x7b88534bb277 in void Eigen::TriangularViewImpl const, 1u, Eigen::Dense>::solveInPlace<1, Eigen::Block, -1, -1, false> >(Eigen::MatrixBase, -1, -1, false> > const&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182 #3 0x7b88534bb277 in void Eigen::TriangularViewImpl const, 1u, Eigen::Dense>::solveInPlace<1, Eigen::Block, -1, -1, false> >(Eigen::MatrixBase, -1, -1, false> > const&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:167 #4 0x7b88534bb277 in void Eigen::TriangularViewImpl const, 1u, Eigen::Dense>::solveInPlace, -1, -1, false> >(Eigen::MatrixBase, -1, -1, false> > const&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522 #5 0x7b88534bb277 in void Eigen::LLT, 1>::_solve_impl_transposed, Eigen::Block, -1, -1, false> >(Eigen::Matrix const&, Eigen::Block, -1, -1, false>&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Cholesky/LLT.h:496 #6 0x7b88534bb277 in void Eigen::LLT, 1>::_solve_impl, Eigen::Block, -1, -1, false> >(Eigen::Matrix const&, Eigen::Block, -1, -1, false>&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Cholesky/LLT.h:487 #7 0x7b88534bb277 in Eigen::internal::Assignment, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Solve.h:147 #8 0x7b88534bb277 in void Eigen::internal::call_assignment_no_alias, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7b88534bb277 in void Eigen::internal::call_assignment, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, 1>, Eigen::Matrix >, Eigen::internal::evaluator_traits, 1>, Eigen::Matrix > >::Shape>::value, void*>::type) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7b88534bb277 in void Eigen::internal::call_assignment, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix > >(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7b88534bb277 in Eigen::Block, -1, -1, false>& Eigen::MatrixBase, -1, -1, false> >::operator=, 1>, Eigen::Matrix > >(Eigen::DenseBase, 1>, Eigen::Matrix > > const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7b88534bb277 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:3257 #13 0x7b8853537ec0 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:4191 #14 0x7b88535c2e70 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:7744 #15 0x7b8853629ffe in ai_mme_sp2_impl /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:8165 #16 0x7b88534021af in ai_mme_sp2_impl(arma::SpMat const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::SpMat const&, arma::SpMat const&, bool const&, arma::Col const&, arma::Col const&, int, double, double, double, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool const&, int const&, std::__cxx11::basic_string, std::allocator > const&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int, std::function const*)::{lambda(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool, int, std::function const*)#1}::operator()(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool, int, std::function const*) const [clone .constprop.0] /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:56 #17 0x7b8853402a36 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:74 #18 0x7b885392c3f2 in __invoke_impl, ai_mme_sp2_impl(const arma::sp_mat&, const Rcpp::List&, const arma::vec&, const Rcpp::List&, const arma::sp_mat&, const arma::sp_mat&, bool const&, const arma::uvec&, const arma::uvec&, int, double, double, double, const Rcpp::List&, const arma::vec&, const arma::vec&, bool const&, int const&, const std::string&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int, const sommer::RRConditionalCallback*)::&, const Rcpp::Vector<19, Rcpp::PreserveStorage>&, int> /usr/include/c++/16/bits/invoke.h:63 #19 0x7b885392c3f2 in __invoke_r, ai_mme_sp2_impl(const arma::sp_mat&, const Rcpp::List&, const arma::vec&, const Rcpp::List&, const arma::sp_mat&, const arma::sp_mat&, bool const&, const arma::uvec&, const arma::uvec&, int, double, double, double, const Rcpp::List&, const arma::vec&, const arma::vec&, bool const&, int const&, const std::string&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int, const sommer::RRConditionalCallback*)::&, const Rcpp::Vector<19, Rcpp::PreserveStorage>&, int> /usr/include/c++/16/bits/invoke.h:118 #20 0x7b885392c3f2 in _M_invoke /usr/include/c++/16/bits/std_function.h:296 #21 0x7b88533777d4 in std::function (Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int)>::operator()(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int) const /usr/include/c++/16/bits/std_function.h:581 #22 0x7b88533777d4 in sommer::fitCommonScale(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int, double, double, double, arma::Col const&, int, bool, bool, std::function (Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int)> const&)::{lambda(arma::Col const&)#2}::operator()(arma::Col const&) const /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/mme_scale.h:108 #23 0x7b885337dec7 in sommer::fitCommonScale(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int, double, double, double, arma::Col const&, int, bool, bool, std::function (Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int)> const&) /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/mme_scale.h:124 #24 0x7b8853680212 in ai_mme_sp2_impl /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:75 #25 0x7b885369ef28 in ai_mme_sp2(arma::SpMat const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::SpMat const&, arma::SpMat const&, bool const&, arma::Col const&, arma::Col const&, int, double, double, double, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool const&, int const&, std::__cxx11::basic_string, std::allocator > const&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int) /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:11535 #26 0x7b88530d3963 in _sommer_ai_mme_sp2 /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/RcppExports.cpp:141 #27 0x00000075aed5 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:936 #28 0x0000007634da in do_dotcall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #29 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #30 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #31 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #34 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #36 0x00000062b294 in do_docall /data/localhost/ripley/R/svn/R-devel/src/main/coerce.c:2788 #37 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #38 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #39 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #42 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #44 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #45 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #46 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #48 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #50 0x0000008ae3de in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #51 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #52 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #53 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #54 0x00000089c0be in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2883 #55 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #56 0x00000089c0be in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2883 #57 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #58 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #59 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #60 0x0000008b6359 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #61 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #62 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #63 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #66 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #68 0x0000008b7052 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #69 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #70 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #71 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #74 0x000000897809 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x000000897809 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x0000004a0207 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x000000abe611 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #78 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #79 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #80 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #83 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #85 0x000000a24378 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #86 0x000000a24378 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #87 0x000000a4204a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #88 0x000000a420e2 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #89 0x0000004122ff in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f886b40a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #91 0x7f886b40a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #92 0x000000412cc4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412cc4) (BuildId: 4876d4617850707d9e70c2f8501e04b9a0625a9d) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:262:26: runtime error: reference binding to null pointer of type 'ScalarWithConstIfNotLvalue' #0 0x7b88534bad42 in Eigen::MapBase, -1, -1, false>, 1>::coeffRef(long, long) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:262 #1 0x7b88534bad42 in Eigen::internal::triangular_solver_selector const> const, Eigen::Block, -1, -1, false>, 1, 2, 0, -1>::run(Eigen::Transpose const> const&, Eigen::Block, -1, -1, false>&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102 #2 0x7b88534bad42 in void Eigen::TriangularViewImpl const> const, 2u, Eigen::Dense>::solveInPlace<1, Eigen::Block, -1, -1, false> >(Eigen::MatrixBase, -1, -1, false> > const&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182 #3 0x7b88534bad42 in void Eigen::TriangularViewImpl const> const, 2u, Eigen::Dense>::solveInPlace, -1, -1, false> >(Eigen::MatrixBase, -1, -1, false> > const&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522 #4 0x7b88534bad42 in void Eigen::LLT, 1>::_solve_impl_transposed, Eigen::Block, -1, -1, false> >(Eigen::Matrix const&, Eigen::Block, -1, -1, false>&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Cholesky/LLT.h:497 #5 0x7b88534bad42 in void Eigen::LLT, 1>::_solve_impl, Eigen::Block, -1, -1, false> >(Eigen::Matrix const&, Eigen::Block, -1, -1, false>&) const /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Cholesky/LLT.h:487 #6 0x7b88534bad42 in Eigen::internal::Assignment, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Solve.h:147 #7 0x7b88534bad42 in void Eigen::internal::call_assignment_no_alias, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7b88534bad42 in void Eigen::internal::call_assignment, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, 1>, Eigen::Matrix >, Eigen::internal::evaluator_traits, 1>, Eigen::Matrix > >::Shape>::value, void*>::type) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7b88534bad42 in void Eigen::internal::call_assignment, -1, -1, false>, Eigen::Solve, 1>, Eigen::Matrix > >(Eigen::Block, -1, -1, false>&, Eigen::Solve, 1>, Eigen::Matrix > const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7b88534bad42 in Eigen::Block, -1, -1, false>& Eigen::MatrixBase, -1, -1, false> >::operator=, 1>, Eigen::Matrix > >(Eigen::DenseBase, 1>, Eigen::Matrix > > const&) /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7b88534bad42 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:3257 #12 0x7b8853537ec0 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:4191 #13 0x7b88535c2e70 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:7744 #14 0x7b8853629ffe in ai_mme_sp2_impl /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:8165 #15 0x7b88534021af in ai_mme_sp2_impl(arma::SpMat const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::SpMat const&, arma::SpMat const&, bool const&, arma::Col const&, arma::Col const&, int, double, double, double, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool const&, int const&, std::__cxx11::basic_string, std::allocator > const&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int, std::function const*)::{lambda(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool, int, std::function const*)#1}::operator()(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool, int, std::function const*) const [clone .constprop.0] /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:56 #16 0x7b8853402a36 in operator() /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:74 #17 0x7b885392c3f2 in __invoke_impl, ai_mme_sp2_impl(const arma::sp_mat&, const Rcpp::List&, const arma::vec&, const Rcpp::List&, const arma::sp_mat&, const arma::sp_mat&, bool const&, const arma::uvec&, const arma::uvec&, int, double, double, double, const Rcpp::List&, const arma::vec&, const arma::vec&, bool const&, int const&, const std::string&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int, const sommer::RRConditionalCallback*)::&, const Rcpp::Vector<19, Rcpp::PreserveStorage>&, int> /usr/include/c++/16/bits/invoke.h:63 #18 0x7b885392c3f2 in __invoke_r, ai_mme_sp2_impl(const arma::sp_mat&, const Rcpp::List&, const arma::vec&, const Rcpp::List&, const arma::sp_mat&, const arma::sp_mat&, bool const&, const arma::uvec&, const arma::uvec&, int, double, double, double, const Rcpp::List&, const arma::vec&, const arma::vec&, bool const&, int const&, const std::string&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int, const sommer::RRConditionalCallback*)::&, const Rcpp::Vector<19, Rcpp::PreserveStorage>&, int> /usr/include/c++/16/bits/invoke.h:118 #19 0x7b885392c3f2 in _M_invoke /usr/include/c++/16/bits/std_function.h:296 #20 0x7b88533777d4 in std::function (Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int)>::operator()(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int) const /usr/include/c++/16/bits/std_function.h:581 #21 0x7b88533777d4 in sommer::fitCommonScale(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int, double, double, double, arma::Col const&, int, bool, bool, std::function (Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int)> const&)::{lambda(arma::Col const&)#2}::operator()(arma::Col const&) const /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/mme_scale.h:108 #22 0x7b885337dec7 in sommer::fitCommonScale(Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int, double, double, double, arma::Col const&, int, bool, bool, std::function (Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int)> const&) /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/mme_scale.h:124 #23 0x7b8853680212 in ai_mme_sp2_impl /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:75 #24 0x7b885369ef28 in ai_mme_sp2(arma::SpMat const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::SpMat const&, arma::SpMat const&, bool const&, arma::Col const&, arma::Col const&, int, double, double, double, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, arma::Col const&, bool const&, int const&, std::__cxx11::basic_string, std::allocator > const&, double const&, int const&, int const&, int const&, bool const&, bool const&, double const&, double const&, bool const&, bool, int) /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/ai_mme_sp2.cpp:11535 #25 0x7b88530d3963 in _sommer_ai_mme_sp2 /data/localhost/ripley/R/packages/tests-gcc-SAN/sommer/src/RcppExports.cpp:141 #26 0x00000075aed5 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:936 #27 0x0000007634da in do_dotcall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #28 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #29 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #30 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #33 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #35 0x00000062b294 in do_docall /data/localhost/ripley/R/svn/R-devel/src/main/coerce.c:2788 #36 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #37 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #38 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #41 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #43 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #44 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #45 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #47 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #49 0x0000008ae3de in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #50 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #51 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #52 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #53 0x00000089c0be in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2883 #54 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #55 0x00000089c0be in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2883 #56 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #57 0x00000088e08e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #58 0x000000879486 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #59 0x0000008b6359 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #60 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #61 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #62 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #65 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #67 0x0000008b7052 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #68 0x0000008efb6b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #69 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #70 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #73 0x000000897809 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x000000897809 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x0000004a0207 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x000000abe611 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #77 0x0000008f98dc in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #78 0x0000008daa7b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #79 0x0000008789aa in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x000000891d9a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x000000895a9d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #82 0x000000879058 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x000000879058 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #84 0x000000a24378 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #85 0x000000a24378 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #86 0x000000a4204a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #87 0x000000a420e2 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #88 0x0000004122ff in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f886b40a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #90 0x7f886b40a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #91 0x000000412cc4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412cc4) (BuildId: 4876d4617850707d9e70c2f8501e04b9a0625a9d) BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. warning: solve(): system is close to singular; rcond: 3.02443e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.19156e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 9.58343e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.13015e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 8.57465e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.96213e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.00519e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 9.18783e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 3.93252e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.13661e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 9.42047e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 2.44954e-18; attempting approx solution BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. warning: solve(): system is close to singular; rcond: 3.02443e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.19156e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 9.58343e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.13015e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 8.57465e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.96213e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.00519e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 9.18783e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 3.93252e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.13661e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 9.42047e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 2.44954e-18; attempting approx solution BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. warning: solve(): system is close to singular; rcond: 2.86102e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.39064e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.5145e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.81891e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.7131e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.30626e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.94425e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 3.09605e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 2.94232e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.25448e-16; attempting approx solution warning: solve(): system is close to singular; rcond: 5.84184e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.06738e-16; attempting approx solution warning: solve(): system is close to singular; rcond: 6.5433e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.41365e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.53614e-16; attempting approx solution warning: solve(): system is close to singular; rcond: 3.29099e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.34699e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 7.40632e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.59689e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.21391e-16; attempting approx solution warning: solve(): system is close to singular; rcond: 4.55469e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.58664e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.99265e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 6.40576e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 7.96494e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 5.9423e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.07156e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.1863e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 6.42354e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.9086e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 3.85068e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 1.39276e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 2.79093e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.20305e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 2.9442e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.04042e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 2.24106e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 4.87373e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.66444e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 7.50389e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.94391e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 4.79199e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 4.99988e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 9.96035e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 3.00491e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.58151e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 1.32333e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.50082e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 1.32333e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.21391e-16; attempting approx solution warning: solve(): system is close to singular; rcond: 6.06942e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.28372e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.41413e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.27614e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.65537e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.80024e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 4.18026e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 4.56029e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 7.60048e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 3.80023e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 5.70037e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.30144e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.07299e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.30144e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.07299e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.30144e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 2.07299e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 3.35605e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 1.86468e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.45145e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.15652e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 6.3606e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 5.43474e-21; attempting approx solution warning: solve(): system is close to singular; rcond: 3.35605e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 1.86468e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.45145e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.15652e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 6.3606e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 5.43474e-21; attempting approx solution warning: solve(): system is close to singular; rcond: 3.35605e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 1.86468e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.45145e-19; attempting approx solution warning: solve(): system is close to singular; rcond: 1.15652e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 6.3606e-20; attempting approx solution warning: solve(): system is close to singular; rcond: 5.43474e-21; attempting approx solution warning: solve(): system is close to singular; rcond: 2.46259e-22; attempting approx solution warning: solve(): system is close to singular; rcond: 1.01261e-22; attempting approx solution warning: solve(): system is close to singular; rcond: 2.46259e-22; attempting approx solution warning: solve(): system is close to singular; rcond: 1.01261e-22; attempting approx solution warning: solve(): system is close to singular; rcond: 1.25409e-19; attempting approx solution BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. MME solve-only path: iteration-on-data PCG (block-Jacobi) PCG converged in 7 iterations (relative residual 3.70776e-15; 126 equations, 1 residual block patterns). Fit CPU usage: 0.061 CPU-s / 0.062 elapsed-s = 0.98 average CPUs (not an active-thread count). BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. MME solve-only path: iteration-on-data PCG (block-Jacobi) PCG converged in 7 iterations (relative residual 3.5546e-15; 126 equations, 1 residual block patterns). Fit CPU usage: 0.060 CPU-s / 0.060 elapsed-s = 1.00 average CPUs (not an active-thread count). BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. MME solve-only path: iteration-on-data PCG (block-Jacobi) PCG converged in 7 iterations (relative residual 3.70776e-15; 126 equations, 1 residual block patterns). Fit CPU usage: 0.097 CPU-s / 0.098 elapsed-s = 0.99 average CPUs (not an active-thread count). BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. MME solve-only path: iteration-on-data PCG (block-Jacobi) PCG converged in 7 iterations (relative residual 5.50801e-16; 44 equations, 1 residual block patterns). Fit CPU usage: 0.052 CPU-s / 0.052 elapsed-s = 1.00 average CPUs (not an active-thread count). BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. MME solve-only path: iteration-on-data PCG (block-Jacobi) PCG converged in 7 iterations (relative residual 1.88671e-15; 44 equations, 1 residual block patterns). Fit CPU usage: 0.052 CPU-s / 0.052 elapsed-s = 1.00 average CPUs (not an active-thread count). BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. MME solve-only path: iteration-on-data PCG (block-Jacobi) PCG converged in 7 iterations (relative residual 2.43402e-15; 126 equations, 1 residual block patterns). Fit CPU usage: 0.061 CPU-s / 0.061 elapsed-s = 1.00 average CPUs (not an active-thread count). Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Engine selected: direct inversion (formulation='direct') Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix NOTE: Results may be misleading due to involvement in interactions NOTE: Results may be misleading due to involvement in interactions NOTE: Results may be misleading due to involvement in interactions Adding 2 additional Gu levels to the main-effect model matrix: i11, i12 Adding 1 additional Gu levels to the main-effect model matrix: new-genotype Adding 25 additional Gu levels to the main-effect model matrix: i26, i27, i28, i29, i30, i31, i32, i33, i34, i35 ... Adding 25 additional Gu levels to the main-effect model matrix: i26, i27, i28, i29, i30, i31, i32, i33, i34, i35 ... Adding 1 additional Gu levels to the main-effect model matrix: g8 Adding 1 additional Gu levels to the main-effect model matrix: id30 Adding 1 additional Gu levels to the main-effect model matrix: id30 Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix Using the weights matrix BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. BLAS backend: /data/localhost/ripley/R/gcc-SAN3/lib/libRblas.so. BLAS threads configured: unknown (unavailable); allocation-aware CPUs: 2. Using the weights matrix Using the weights matrix warning: solve(): system is close to singular; rcond: 3.81268e-18; attempting approx solution Using the weights matrix warning: solve(): system is close to singular; rcond: 8.75567e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 9.61466e-18; attempting approx solution warning: solve(): system is close to singular; rcond: 3.93265e-17; attempting approx solution [ FAIL 0 | WARN 0 | SKIP 17 | PASS 8416 ] ══ Skipped tests (17) ══════════════════════════════════════════════════════════ • Native checks require the package source tree (11): 'test-ai-recovery.R:15:3', 'test-ai-variance-floor.R:2:3', 'test-ai-variance-floor.R:34:3', 'test-ai-variance-floor.R:48:3', 'test-mme-control-native.R:2:3', 'test-mme-control-native.R:8:3', 'test-mme-paths.R:2:3', 'test-mme-saddle.R:20:3', 'test-mme-solver.R:2:3', 'test-pcg-numerics.R:4:5', 'test-reduced-ai.R:39:3' • No supported BLAS controller available (1): 'test-mmes-threads.R:41:3' • On CRAN (3): 'test-wald-mmes.R:42:3', 'test-wald-mmes.R:54:3', 'test-wald-mmes.R:76:3' • README requires the package source tree (1): 'test-readme.R:3:3' • Set SOMMER_TEST_CUDA=true on a CUDA build with an NVIDIA GPU (1): 'test-mme-gpu.R:57:3' [ FAIL 0 | WARN 0 | SKIP 17 | PASS 8416 ] > > proc.time() user system elapsed 789.885 14.877 759.170