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Type 'q()' to quit R. > library(testthat) > library(r2sbml) > > test_check("r2sbml") /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml/src/libsbml-src/src/sbml/validator/Validator.cpp:340:7: runtime error: downcast of address 0x7b676b1f5b00 which does not point to an object of type 'TConstraint' 0x7b676b1f5b00: note: object is of type 'VConstraintSpeciesReference20611' 00 00 00 00 30 b7 45 5e 07 7b 00 00 83 50 00 00 02 00 00 00 70 e9 2c 6a 07 7b 00 00 01 be be be ^~~~~~~~~~~~~~~~~~~~~~~ vptr for 'VConstraintSpeciesReference20611' #0 0x7b075b5634a6 in ValidatorConstraints::add(VConstraint*) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xd634a6) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #1 0x7b075bb6c0c9 in ConsistencyValidator::init() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x136c0c9) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #2 0x7b075b42413a in SBMLInternalValidator::checkConsistency(bool) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xc2413a) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #3 0x7b075adfd1f0 in SBMLDocument::checkConsistency() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5fd1f0) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #4 0x7b075b867e2c in SBMLReactionConverter::isDocumentValid() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1067e2c) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #5 0x7b075b876ae9 in SBMLReactionConverter::convert() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1076ae9) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #6 0x7b075ae054cd in SBMLDocument::convert(ConversionProperties const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x6054cd) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #7 0x7b075a990623 in convertReactions(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x190623) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #8 0x7b075a90d632 in _r2sbml_convertReactions (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x10d632) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #9 0x00000075fa3a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #10 0x000000904867 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8708 #11 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #12 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #14 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #15 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #16 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #17 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #18 0x00000087b017 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1191 #19 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #20 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #21 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x00000087b13c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #24 0x0000008ba443 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4020 #25 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #26 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #27 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #28 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #30 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #31 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #32 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x00000074a78a in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #34 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #35 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #36 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #38 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #39 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #40 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #41 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #42 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #43 0x00000089d26e in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2885 #44 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #45 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #46 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #47 0x0000008b74f9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3977 #48 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #49 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #50 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #52 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #53 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #54 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #55 0x0000008b81f2 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3995 #56 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #57 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #58 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #60 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #61 0x0000008989b9 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #62 0x0000008989b9 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2467 #63 0x0000004a0597 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #64 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #65 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #66 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #67 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #69 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #70 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #71 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #72 0x000000a25478 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #73 0x000000a25478 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #74 0x000000a431da in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #75 0x000000a43272 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #76 0x0000004122df in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #77 0x7f076e80a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #78 0x7f076e80a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #79 0x000000412ca4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412ca4) (BuildId: 71398c2e2422cbe6c955a1152125cb4edf0131ca) /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml/src/libsbml-src/src/sbml/validator/Validator.cpp:93:22: runtime error: member call on address 0x7b676b1f5b00 which does not point to an object of type 'TConstraint' 0x7b676b1f5b00: note: object is of type 'VConstraintSpeciesReference20611' 00 00 00 00 30 b7 45 5e 07 7b 00 00 83 50 00 00 02 00 00 00 70 e9 2c 6a 07 7b 00 00 00 be be be ^~~~~~~~~~~~~~~~~~~~~~~ vptr for 'VConstraintSpeciesReference20611' #0 0x7b075b5a6cc8 in ValidatingVisitor::visit(ModifierSpeciesReference const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xda6cc8) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #1 0x7b075abe43be in ListOf::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x3e43be) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #2 0x7b075ad4a58d in Reaction::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x54a58d) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #3 0x7b075abe43be in ListOf::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x3e43be) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #4 0x7b075ac2c946 in Model::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x42c946) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #5 0x7b075adc3df6 in SBMLDocument::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5c3df6) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #6 0x7b075b5b6479 in Validator::validate(SBMLDocument const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xdb6479) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #7 0x7b075b4241c3 in SBMLInternalValidator::checkConsistency(bool) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xc241c3) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #8 0x7b075adfd1f0 in SBMLDocument::checkConsistency() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5fd1f0) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #9 0x7b075b867e2c in SBMLReactionConverter::isDocumentValid() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1067e2c) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #10 0x7b075b876ae9 in SBMLReactionConverter::convert() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1076ae9) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #11 0x7b075ae054cd in SBMLDocument::convert(ConversionProperties const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x6054cd) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #12 0x7b075a990623 in convertReactions(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x190623) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #13 0x7b075a90d632 in _r2sbml_convertReactions (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x10d632) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #14 0x00000075fa3a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #15 0x000000904867 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8708 #16 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #17 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #19 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #20 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #21 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #22 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x00000087b017 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1191 #24 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #25 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #26 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x00000087b13c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #29 0x0000008ba443 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4020 #30 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #31 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #32 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #33 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #35 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #36 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #37 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #38 0x00000074a78a in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #39 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #40 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #41 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #42 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #43 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #44 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #45 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #46 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #47 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #48 0x00000089d26e in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2885 #49 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #50 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #51 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #52 0x0000008b74f9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3977 #53 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #54 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #55 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #57 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #58 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #59 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #60 0x0000008b81f2 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3995 #61 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #62 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #63 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #65 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #66 0x0000008989b9 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #67 0x0000008989b9 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2467 #68 0x0000004a0597 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #69 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #70 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #71 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #72 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #74 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #75 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #76 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #77 0x000000a25478 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #78 0x000000a25478 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #79 0x000000a431da in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #80 0x000000a43272 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #81 0x0000004122df in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #82 0x7f076e80a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #83 0x7f076e80a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #84 0x000000412ca4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412ca4) (BuildId: 71398c2e2422cbe6c955a1152125cb4edf0131ca) /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml/src/libsbml-src/src/sbml/validator/constraints/ConsistencyConstraints.cpp:1830:36: runtime error: member call on address 0x7c976b741d80 which does not point to an object of type 'SpeciesReference' 0x7c976b741d80: note: object is of type 'ModifierSpeciesReference' 00 00 00 00 d0 21 46 5e 07 7b 00 00 98 1d 74 6b 97 7c 00 00 00 00 00 00 00 00 00 00 00 be be be ^~~~~~~~~~~~~~~~~~~~~~~ vptr for 'ModifierSpeciesReference' #0 0x7b075bb4b29d in VConstraintSpeciesReference21111::check_(Model const&, SpeciesReference const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x134b29d) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #1 0x7b075b5a6513 in ValidatingVisitor::visit(ModifierSpeciesReference const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xda6513) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #2 0x7b075abe43be in ListOf::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x3e43be) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #3 0x7b075ad4a58d in Reaction::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x54a58d) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #4 0x7b075abe43be in ListOf::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x3e43be) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #5 0x7b075ac2c946 in Model::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x42c946) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #6 0x7b075adc3df6 in SBMLDocument::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5c3df6) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #7 0x7b075b5b6479 in Validator::validate(SBMLDocument const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xdb6479) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #8 0x7b075b4241c3 in SBMLInternalValidator::checkConsistency(bool) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xc241c3) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #9 0x7b075adfd1f0 in SBMLDocument::checkConsistency() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5fd1f0) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #10 0x7b075b867e2c in SBMLReactionConverter::isDocumentValid() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1067e2c) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #11 0x7b075b876ae9 in SBMLReactionConverter::convert() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1076ae9) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #12 0x7b075ae054cd in SBMLDocument::convert(ConversionProperties const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x6054cd) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #13 0x7b075a990623 in convertReactions(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x190623) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #14 0x7b075a90d632 in _r2sbml_convertReactions (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x10d632) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #15 0x00000075fa3a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #16 0x000000904867 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8708 #17 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #18 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #20 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #21 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #22 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #23 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x00000087b017 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1191 #25 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #26 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #27 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087b13c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x0000008ba443 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4020 #31 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #32 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #33 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #34 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #36 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #37 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #38 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #39 0x00000074a78a in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #40 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #41 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #42 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #44 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #45 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #46 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #47 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #48 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #49 0x00000089d26e in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2885 #50 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #51 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #52 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #53 0x0000008b74f9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3977 #54 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #55 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #56 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #58 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #59 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #60 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #61 0x0000008b81f2 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3995 #62 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #63 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #64 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #66 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #67 0x0000008989b9 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #68 0x0000008989b9 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2467 #69 0x0000004a0597 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #70 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #71 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #72 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #73 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #75 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #76 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #77 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #78 0x000000a25478 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #79 0x000000a25478 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #80 0x000000a431da in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #81 0x000000a43272 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #82 0x0000004122df in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #83 0x7f076e80a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #84 0x7f076e80a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #85 0x000000412ca4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412ca4) (BuildId: 71398c2e2422cbe6c955a1152125cb4edf0131ca) /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml/src/libsbml-src/src/sbml/LocalParameter.cpp:655:17: runtime error: downcast of address 0x7ca76b30e480 which does not point to an object of type 'LocalParameter' 0x7ca76b30e480: note: object is of type 'Parameter' 00 00 00 00 30 8d 46 5e 07 7b 00 00 98 e4 30 6b a7 7c 00 00 01 00 00 00 00 00 00 00 6b 00 be be ^~~~~~~~~~~~~~~~~~~~~~~ vptr for 'Parameter' #0 0x7b075ad32252 in ListOfParameters::get(std::__cxx11::basic_string, std::allocator > const&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x532252) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #1 0x7b075bcc4b3a in CiElementMathCheck::checkCiElement(Model const&, ASTNode const&, SBase const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x14c4b3a) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #2 0x7b075bd0dc57 in MathMLBase::checkChildren(Model const&, ASTNode const&, SBase const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x150dc57) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #3 0x7b075bd11c3c in MathMLBase::check_(Model const&, Model const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1511c3c) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #4 0x7b075b57c6b4 in ValidatingVisitor::visit(Model const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xd7c6b4) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #5 0x7b075ac2c0da in Model::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x42c0da) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #6 0x7b075adc3df6 in SBMLDocument::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5c3df6) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #7 0x7b075b5b6479 in Validator::validate(SBMLDocument const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xdb6479) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #8 0x7b075b424925 in SBMLInternalValidator::checkConsistency(bool) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xc24925) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #9 0x7b075adfd1f0 in SBMLDocument::checkConsistency() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5fd1f0) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #10 0x7b075b867e2c in SBMLReactionConverter::isDocumentValid() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1067e2c) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #11 0x7b075b876ae9 in SBMLReactionConverter::convert() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1076ae9) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #12 0x7b075ae054cd in SBMLDocument::convert(ConversionProperties const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x6054cd) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #13 0x7b075a990623 in convertReactions(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x190623) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #14 0x7b075a90d632 in _r2sbml_convertReactions (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x10d632) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #15 0x00000075fa3a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #16 0x000000904867 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8708 #17 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #18 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #20 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #21 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #22 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #23 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x00000087b017 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1191 #25 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #26 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #27 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087b13c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x0000008ba443 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4020 #31 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #32 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #33 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #34 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #36 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #37 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #38 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #39 0x00000074a78a in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #40 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #41 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #42 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #44 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #45 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #46 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #47 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #48 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #49 0x00000089d26e in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2885 #50 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #51 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #52 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #53 0x0000008b74f9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3977 #54 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #55 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #56 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #58 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #59 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #60 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #61 0x0000008b81f2 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3995 #62 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #63 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #64 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #66 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #67 0x0000008989b9 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #68 0x0000008989b9 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2467 #69 0x0000004a0597 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #70 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #71 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #72 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #73 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #75 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #76 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #77 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #78 0x000000a25478 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #79 0x000000a25478 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #80 0x000000a431da in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #81 0x000000a43272 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #82 0x0000004122df in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #83 0x7f076e80a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #84 0x7f076e80a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #85 0x000000412ca4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412ca4) (BuildId: 71398c2e2422cbe6c955a1152125cb4edf0131ca) Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 1 /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml/src/libsbml-src/src/sbml/Reaction.cpp:82:28: runtime error: downcast of address 0x7c976bcc4280 which does not point to an object of type 'SpeciesReference' 0x7c976bcc4280: note: object is of type 'ModifierSpeciesReference' 00 00 00 00 d0 21 46 5e 07 7b 00 00 98 42 cc 6b 97 7c 00 00 00 00 00 00 00 00 00 00 00 be be be ^~~~~~~~~~~~~~~~~~~~~~~ vptr for 'ModifierSpeciesReference' #0 0x7b075ad55c3b in GetSpeciesRef(ListOf&, std::__cxx11::basic_string, std::allocator > const&) [clone .lto_priv.0] (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x555c3b) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #1 0x7b075ad6b00f in Reaction::getModifier(std::__cxx11::basic_string, std::allocator > const&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x56b00f) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #2 0x7b075bb6004c in VConstraintLocalParameter21173::check_(Model const&, LocalParameter const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x136004c) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #3 0x7b075b59b11a in ValidatingVisitor::visit(Parameter const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xd9b11a) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #4 0x7b075abe43be in ListOf::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x3e43be) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #5 0x7b075abd0570 in KineticLaw::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x3d0570) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #6 0x7b075ad4a7cb in Reaction::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x54a7cb) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #7 0x7b075abe43be in ListOf::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x3e43be) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #8 0x7b075ac2c946 in Model::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x42c946) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #9 0x7b075adc3df6 in SBMLDocument::accept(SBMLVisitor&) const (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5c3df6) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #10 0x7b075b5b6479 in Validator::validate(SBMLDocument const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xdb6479) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #11 0x7b075b4241c3 in SBMLInternalValidator::checkConsistency(bool) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0xc241c3) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #12 0x7b075adfd1f0 in SBMLDocument::checkConsistency() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x5fd1f0) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #13 0x7b075b867e2c in SBMLReactionConverter::isDocumentValid() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1067e2c) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #14 0x7b075b876ae9 in SBMLReactionConverter::convert() (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x1076ae9) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #15 0x7b075ae054cd in SBMLDocument::convert(ConversionProperties const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x6054cd) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #16 0x7b075a990623 in convertReactions(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x190623) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #17 0x7b075a90d632 in _r2sbml_convertReactions (/data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/libs/r2sbml.so+0x10d632) (BuildId: 77187ecca3a85a09dc5ba75135705c28320ffbf3) #18 0x00000075fa3a in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #19 0x000000904867 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8708 #20 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #21 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #23 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #24 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #25 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #26 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x0000008c3e6f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #28 0x0000008c3e6f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5869 #29 0x0000008fe104 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7884 #30 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #31 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x000000947c4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x00000087b13c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #34 0x0000008ba443 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4020 #35 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #36 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #37 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #38 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #40 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #41 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #42 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #43 0x00000088f23e in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3003 #44 0x00000087a5a6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #45 0x0000008b74f9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3977 #46 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #47 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #48 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #50 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #51 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #52 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #53 0x0000008b81f2 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3995 #54 0x0000008f0d0b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8154 #55 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #56 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #58 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #59 0x0000008989b9 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #60 0x0000008989b9 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2467 #61 0x0000004a0597 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #62 0x000000abf461 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #63 0x0000008faa7c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8174 #64 0x0000008dbc1b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7537 #65 0x000000879aca in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x000000892f4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2400 #67 0x000000896c4d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2316 #68 0x00000087a178 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2335 #69 0x00000087a178 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #70 0x000000a25478 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #71 0x000000a25478 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #72 0x000000a431da in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #73 0x000000a43272 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #74 0x0000004122df in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #75 0x7f076e80a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #76 0x7f076e80a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #77 0x000000412ca4 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412ca4) (BuildId: 71398c2e2422cbe6c955a1152125cb4edf0131ca) Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Renamed p to p_: the name is reserved in Julia. Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Renamed p to p_: the name is reserved in Julia. Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml (Level 3, version 2) filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlassignmentrules.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlassignmentrules.xml (Level 3, version 2) filename: /tmp/RtmpPde0tL/file9ca7c6d0eae12.xml error(s): 0 File: /tmp/RtmpPde0tL/file9ca7c6d0eae12.xml (Level 3, version 2) filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml (Level 3, version 2) Conversion completed. Number of ODEs - 4 filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml (Level 3, version 2) filename: /tmp/RtmpPde0tL/file9ca7c10534aba.xml error(s): 0 File: /tmp/RtmpPde0tL/file9ca7c10534aba.xml (Level 3, version 2) filename: /tmp/RtmpPde0tL/file9ca7c46c7e501.xml error(s): 0 File: /tmp/RtmpPde0tL/file9ca7c46c7e501.xml (Level 3, version 2) filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml (Level 3, version 2) filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml (Level 3, version 2) filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlfunctiondefinition.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlfunctiondefinition.xml (Level 3, version 2) filename: /tmp/RtmpPde0tL/file9ca7c3b9400e0.xml error(s): 1 Encountered the following SBML errors: line 1: (01035 [Error]) Main XML content is empty. filename: /tmp/RtmpPde0tL/file9ca7c3b9400e0.xml error(s): 1 Encountered the following SBML errors: line 1: (01035 [Error]) Main XML content is empty. Encountered the following SBML errors: line 1: (01035 [Error]) Main XML content is empty. Encountered the following SBML errors: line 1: (01035 [Error]) Main XML content is empty. filename: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml error(s): 0 File: /data/localhost/ripley/R/packages/tests-gcc-SAN/r2sbml.Rcheck/r2sbml/examples/sbmlsimple.xml (Level 3, version 2) Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 0 Conversion completed. Number of ODEs - 0 Conversion completed. Number of ODEs - 0 Conversion completed. Number of ODEs - 0 Renamed p to p_: the name is reserved in Julia. Conversion completed. Number of ODEs - 0 Conversion completed. Number of ODEs - 0 Conversion completed. Number of ODEs - 0 Conversion completed. Number of ODEs - 0 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 1 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Renamed t to t_: the name is reserved in nlmixr2. Conversion completed. Number of ODEs - 2 Renamed t to t_: the name is reserved in MATLAB. Conversion completed. Number of ODEs - 2 Renamed t to t_: the name is reserved in Julia. Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 3 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 2 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 4 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 15 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 5 Conversion completed. Number of ODEs - 6 Conversion completed. Number of ODEs - 18 [ FAIL 0 | WARN 0 | SKIP 9 | PASS 972 ] ══ Skipped tests (9) ═══════════════════════════════════════════════════════════ • On CRAN (9): 'test-algebraic-solved.R:80:5', 'test-convert.R:536:5', 'test-convert.R:614:5', 'test-names.R:104:5', 'test-outputs.R:88:5', 'test-sbml-test-suite.R:40:5', 'test-spelling.R:233:5', 'test-spelling.R:394:5', 'test-spelling.R:461:5' [ FAIL 0 | WARN 0 | SKIP 9 | PASS 972 ] > > proc.time() user system elapsed 33.176 1.882 35.273