* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/phmm.Rcheck’ * using R Under development (unstable) (2020-03-30 r78111) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘phmm/DESCRIPTION’ ... OK * this is package ‘phmm’ version ‘0.7-14’ * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘phmm’ can be installed ... [43s/57s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking tests ... [11s/12s] ERROR Running ‘testthat.R’ [10s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(phmm) Loading required package: survival Loading required package: lattice Loading required package: Matrix > > test_check("phmm") phmm.c:501:8: runtime error: index 2 out of bounds for type 'double *[*]' #0 0x7fc5684950f0 in Estep /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:501 #1 0x7fc568495c36 in EM /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:380 #2 0x7fc5684a105a in phmm /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:181 #3 0x596d85 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1950 #4 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #5 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #6 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #7 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #8 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #9 0x67a351 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956 #10 0x66cdec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798 #11 0x676708 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2507 #12 0x66cdec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798 #13 0x67d216 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331 #14 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #15 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #16 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #17 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #18 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #19 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #20 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #21 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #22 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #23 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #24 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #25 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #26 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #27 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #28 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #29 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #30 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #31 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #32 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #33 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #34 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #35 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #36 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #37 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #38 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #39 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #40 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #41 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #42 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #43 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #44 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #45 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #46 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #47 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #48 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #49 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #50 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #51 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #52 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #53 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #54 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #55 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #56 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #57 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #58 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #59 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #60 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #61 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #62 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #63 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #64 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #65 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #66 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #67 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #68 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #69 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #70 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #71 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #72 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #73 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #74 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #75 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #76 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #77 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #78 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #79 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #80 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #81 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #82 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #83 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #84 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #85 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #86 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #87 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #88 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #89 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #90 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #91 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #92 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #93 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #94 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #95 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #96 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #97 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #98 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #99 0x67e30f in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3354 #100 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #101 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #102 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #103 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #104 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #105 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #106 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #107 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #108 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #109 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #110 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #111 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #112 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #113 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #114 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #115 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #116 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #117 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #118 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #119 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #120 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #121 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #122 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #123 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #124 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #125 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #126 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #127 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #128 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #129 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #130 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #131 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #132 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #133 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #134 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #135 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #136 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #137 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #138 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #139 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #140 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #141 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #142 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #143 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #144 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #145 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #146 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #147 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #148 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #149 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #150 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #151 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #152 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #153 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #154 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #155 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #156 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #157 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #158 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #159 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #160 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #161 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #162 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #163 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #164 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #165 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #166 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #167 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #168 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #169 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #170 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #171 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #172 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #173 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #174 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #175 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #176 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #177 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #178 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #179 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #180 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #181 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #182 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #183 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #184 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #185 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #186 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #187 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #188 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #189 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #190 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #191 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #192 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #193 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #194 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #195 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #196 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #197 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #198 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #199 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #200 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #201 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #202 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #203 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #204 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #205 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #206 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #207 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #208 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #209 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #210 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #211 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #212 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #213 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #214 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #215 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #216 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #217 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #218 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #219 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #220 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #221 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #222 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #223 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #224 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #225 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #226 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #227 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #228 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #229 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #230 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #231 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #232 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #233 0x67b29d in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1955 #234 0x44a79a in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:70 #235 0x717e0f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384 #236 0x62f1f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110 #237 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #238 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #239 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #240 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #241 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #242 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #243 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #244 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #245 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #246 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #247 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #248 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #249 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #250 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #251 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #252 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #253 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #254 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #255 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #256 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #257 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #258 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #259 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #260 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #261 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #262 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #263 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #264 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #265 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #266 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #267 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #268 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #269 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #270 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #271 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #272 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #273 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #274 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #275 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 ================================================================= ==16652==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7ffecfdf0610 at pc 0x7fc5684950cf bp 0x7ffecfdf05c0 sp 0x7ffecfdf05b0 WRITE of size 8 at 0x7ffecfdf0610 thread T0 #0 0x7fc5684950ce in Estep /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:501 #1 0x7fc568495c36 in EM /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:380 #2 0x7fc5684a105a in phmm /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:181 #3 0x596d85 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1950 #4 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #5 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #6 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #7 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #8 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #9 0x67a351 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956 #10 0x66cdec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798 #11 0x676708 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2507 #12 0x66cdec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798 #13 0x67d216 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331 #14 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #15 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #16 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #17 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #18 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #19 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #20 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #21 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #22 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #23 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #24 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #25 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #26 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #27 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #28 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #29 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #30 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #31 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #32 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #33 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #34 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #35 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #36 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #37 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #38 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #39 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #40 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #41 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #42 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #43 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #44 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #45 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #46 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #47 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #48 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #49 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #50 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #51 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #52 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #53 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #54 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #55 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #56 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #57 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #58 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #59 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #60 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #61 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #62 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #63 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #64 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #65 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #66 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #67 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #68 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #69 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #70 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #71 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #72 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #73 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #74 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #75 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #76 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #77 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #78 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #79 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #80 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #81 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #82 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #83 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #84 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #85 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #86 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #87 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #88 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #89 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #90 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #91 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #92 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #93 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #94 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #95 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #96 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #97 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #98 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #99 0x67e30f in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3354 #100 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #101 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #102 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #103 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #104 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #105 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #106 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #107 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #108 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #109 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #110 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #111 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #112 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #113 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #114 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #115 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #116 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #117 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #118 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #119 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #120 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #121 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #122 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #123 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #124 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #125 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #126 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #127 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #128 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #129 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #130 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #131 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #132 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #133 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #134 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #135 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #136 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #137 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #138 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #139 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #140 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #141 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #142 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #143 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #144 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #145 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #146 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #147 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #148 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #149 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #150 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #151 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #152 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #153 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #154 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #155 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #156 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #157 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #158 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #159 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #160 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #161 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #162 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #163 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #164 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #165 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #166 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #167 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #168 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #169 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #170 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #171 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #172 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #173 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #174 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #175 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #176 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #177 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #178 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #179 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #180 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #181 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #182 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #183 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #184 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #185 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #186 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #187 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #188 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #189 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #190 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #191 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #192 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #193 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #194 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #195 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #196 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #197 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #198 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #199 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #200 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #201 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #202 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #203 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #204 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #205 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #206 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #207 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #208 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #209 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #210 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #211 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #212 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #213 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #214 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #215 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #216 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #217 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #218 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #219 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #220 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #221 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #222 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #223 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #224 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #225 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #226 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #227 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #228 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #229 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #230 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #231 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #232 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #233 0x67b29d in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1955 #234 0x44a79a in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:70 #235 0x717e0f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384 #236 0x62f1f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110 #237 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #238 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #239 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #240 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #241 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #242 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #243 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #244 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #245 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #246 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #247 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #248 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #249 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #250 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #251 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #252 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #253 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #254 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #255 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #256 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #257 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #258 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #259 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #260 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #261 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #262 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #263 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #264 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #265 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #266 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #267 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #268 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #269 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #270 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #271 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #272 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #273 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #274 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #275 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #276 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 Address 0x7ffecfdf0610 is located in stack of thread T0 SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:501 in Estep Shadow bytes around the buggy address: 0x100059fb6070: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100059fb6080: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100059fb6090: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100059fb60a0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100059fb60b0: 00 00 00 00 00 00 00 00 00 00 00 00 ca ca ca ca =>0x100059fb60c0: 00 00[cb]cb cb cb cb cb 00 00 00 00 ca ca ca ca 0x100059fb60d0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100059fb60e0: 00 00 00 00 cb cb cb cb 00 00 00 00 00 00 00 00 0x100059fb60f0: ca ca ca ca 00 00 00 00 00 00 00 00 00 00 00 00 0x100059fb6100: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100059fb6110: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==16652==ABORTING * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [9s/14s] WARNING Error(s) in re-building vignettes: --- re-building ‘phmm_poisson_df.Rmd’ using rmarkdown Loading required package: survival Loading required package: lattice Loading required package: Matrix phmm.c:501:8: runtime error: index 4 out of bounds for type 'double *[*]' #0 0x7fddbd8f20f0 in Estep /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:501 #1 0x7fddbd8f2c36 in EM /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:380 #2 0x7fddbd8fe05a in phmm /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:181 #3 0x596d85 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1950 #4 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #5 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #6 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #7 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #8 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #9 0x67a351 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956 #10 0x66cdec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798 #11 0x67d216 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331 #12 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #13 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #14 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #15 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #16 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #17 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #18 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #19 0x66d5bf in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:746 #20 0x67ee3c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3383 #21 0x717e0f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384 #22 0x62f1f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110 #23 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #24 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #25 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #26 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #27 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #28 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #29 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #30 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #31 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #32 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #33 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #34 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #35 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #36 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #37 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #38 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #39 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #40 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #41 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #42 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #43 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #44 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #45 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #46 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #47 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #48 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #49 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #50 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #51 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #52 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #53 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #54 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #55 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #56 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #57 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #58 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #59 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #60 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #61 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #62 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #63 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #64 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #65 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #66 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #67 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #68 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #69 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #70 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #71 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #72 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #73 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #74 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #75 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #76 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #77 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #78 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #79 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #80 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #81 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #82 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #83 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #84 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #85 0x71d75b in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #86 0x71e256 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #87 0x71edb3 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #88 0x62f1f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110 #89 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #90 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #91 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #92 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #93 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #94 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #95 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #96 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #97 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #98 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #99 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #100 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #101 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #102 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #103 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #104 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #105 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #106 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #107 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #108 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #109 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #110 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #111 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #112 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #113 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #114 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #115 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #116 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #117 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #118 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #119 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #120 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #121 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #122 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #123 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #124 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #125 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #126 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #127 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #128 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #129 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #130 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #131 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #132 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #133 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #134 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #135 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #136 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #137 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #138 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #139 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #140 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #141 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #142 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #143 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #144 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #145 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #146 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #147 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #148 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #149 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #150 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #151 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #152 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #153 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #154 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #155 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #156 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #157 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #158 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #159 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #160 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #161 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #162 0x6eb2dd in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #163 0x6eb2dd in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #164 0x6eb9d8 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #165 0x6ebb24 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #166 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #167 0x7fddd1534f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #168 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) ================================================================= ==16957==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7fff03e5e7e0 at pc 0x7fddbd8f20cf bp 0x7fff03e5e790 sp 0x7fff03e5e780 WRITE of size 8 at 0x7fff03e5e7e0 thread T0 #0 0x7fddbd8f20ce in Estep /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:501 #1 0x7fddbd8f2c36 in EM /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:380 #2 0x7fddbd8fe05a in phmm /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:181 #3 0x596d85 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1950 #4 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #5 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #6 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #7 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #8 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #9 0x67a351 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956 #10 0x66cdec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798 #11 0x67d216 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331 #12 0x61f3f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090 #13 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #14 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #15 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #16 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #17 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #18 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #19 0x66d5bf in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:746 #20 0x67ee3c in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3383 #21 0x717e0f in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384 #22 0x62f1f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110 #23 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #24 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #25 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #26 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #27 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #28 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #29 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #30 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #31 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #32 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #33 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #34 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #35 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #36 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #37 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #38 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #39 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #40 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #41 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #42 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #43 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #44 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #45 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #46 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #47 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #48 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #49 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #50 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #51 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #52 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #53 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #54 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #55 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #56 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #57 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #58 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #59 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #60 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #61 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #62 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #63 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #64 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #65 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #66 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #67 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #68 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #69 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #70 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #71 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #72 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #73 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #74 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #75 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #76 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #77 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #78 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #79 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #80 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #81 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #82 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #83 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #84 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #85 0x71d75b in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #86 0x71e256 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #87 0x71edb3 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #88 0x62f1f1 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110 #89 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #90 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #91 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #92 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #93 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #94 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #95 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #96 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #97 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #98 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #99 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #100 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #101 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #102 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #103 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #104 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #105 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #106 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #107 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #108 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #109 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #110 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #111 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #112 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #113 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #114 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #115 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #116 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #117 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #118 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #119 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #120 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #121 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #122 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #123 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #124 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #125 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #126 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #127 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #128 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #129 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #130 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #131 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #132 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #133 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #134 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #135 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #136 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #137 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #138 0x66e362 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551 #139 0x66edc7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123 #140 0x66edc7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164 #141 0x6350c8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842 #142 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #143 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #144 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #145 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #146 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #147 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #148 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #149 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #150 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #151 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #152 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #153 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #154 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #155 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #156 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #157 0x63ea71 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058 #158 0x66c4af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723 #159 0x671945 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888 #160 0x674064 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814 #161 0x66c8f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846 #162 0x6eb2dd in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #163 0x6eb2dd in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #164 0x6eb9d8 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #165 0x6ebb24 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113 #166 0x419388 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #167 0x7fddd1534f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #168 0x41bacd in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41bacd) Address 0x7fff03e5e7e0 is located in stack of thread T0 SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-gcc-SAN/phmm/src/phmm.c:501 in Estep Shadow bytes around the buggy address: 0x1000607c3ca0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x1000607c3cb0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x1000607c3cc0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x1000607c3cd0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x1000607c3ce0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 =>0x1000607c3cf0: 00 00 00 00 ca ca ca ca 00 00 00 00[cb]cb cb cb 0x1000607c3d00: 00 00 00 00 00 00 00 00 ca ca ca ca 00 00 00 00 0x1000607c3d10: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x1000607c3d20: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x1000607c3d30: 00 00 00 00 cb cb cb cb 00 00 00 00 00 00 00 00 0x1000607c3d40: ca ca ca ca 00 00 00 00 00 00 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==16957==ABORTING * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING