--- re-building ‘computing_adapense.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘computing_adapense.Rmd’ --- re-building ‘lambda_grids.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘lambda_grids.Rmd’ --- re-building ‘migration_guide.Rmd’ using rmarkdown /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7478:26: runtime error: reference binding to null pointer of type 'const double' #0 0x7bb01ecb5b8c in arma::Mat::colptr(unsigned int) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7478 #1 0x7bb01ecb5b8c in arma::subview::extract(arma::Mat&, arma::subview const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:1648 #2 0x7bb01f3fa34e in arma::quasi_unwrap >::quasi_unwrap(arma::subview const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/unwrap.hpp:362 #3 0x7bb01f3fa34e in void arma::glue_join_cols::apply, arma::subview >(arma::Mat_noalias::elem_type>&, arma::Glue, arma::subview, arma::glue_join_cols> const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/glue_join_meat.hpp:91 #4 0x7bb01f3fa34e in arma::Mat::Mat, arma::subview, arma::glue_join_cols>(arma::Glue, arma::subview, arma::glue_join_cols> const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:6240 #5 0x7bb01f3fa34e in nsoptim::PredictorResponseData::RemoveObservation(unsigned int) const nsoptim/objective/../container/data.hpp:62 #6 0x7bb01f5493ba in std::forward_list > pense::enpy_psc_internal::ComputeLoo > > >(nsoptim::LsRegressionLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, unsigned int, unsigned int, nsoptim::AugmentedLarsOptimizer > >*, std::forward_list, std::allocator > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_psc.hpp:139 #7 0x7bb01f47cce3 in std::forward_list > > >, std::allocator > > > > > pense::enpy_psc_internal::ComputePscs > >, void>(nsoptim::LsRegressionLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > >) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_psc.hpp:357 #8 0x7bb01f4579fc in std::forward_list > > >, std::allocator > > > > > pense::PrincipalSensitiviyComponents > > >(nsoptim::LsRegressionLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > > const&, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_psc.hpp:439 #9 0x7bb01f4579fc in std::forward_list > > >, std::allocator > > > > > pense::enpy_initest_internal::ComputeENPY > > >(pense::SLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > > const&, pense::enpy_initest_internal::PyConfiguration const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_initest.hpp:217 #10 0x7bb01f40f4bf in std::forward_list > > >, std::allocator > > > > > pense::PenaYohaiInitialEstimators > > >(pense::SLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > > const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_initest.hpp:464 #11 0x7bb01f93e2e6 in EnpyInitialEstimatesImpl > >, pense::CDPense > > > /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:183 #12 0x7bb01f93e2e6 in std::forward_list > >::Coefficients, std::allocator > >::Coefficients> >, std::allocator > >::Coefficients, std::allocator > >::Coefficients> > > > (anonymous namespace)::EnpyInitialEstimates > > >(pense::SLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, SEXPREC*, SEXPREC*, SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, nsoptim::_metrics_internal::Metrics<0>*) [clone .isra.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:230 #13 0x7bb01f8f9d20 in PenseRegressionImpl > >, nsoptim::RegressionCoefficients > > > /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:271 #14 0x7bb01f8552b1 in PenseMMPenaltyImpl > >, nsoptim::EnPenalty> /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:370 #15 0x7bb01f8552b1 in PenseMMDispatch /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:428 #16 0x7bb01f7ff158 in PensePenaltyDispatch /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:503 #17 0x7bb01f7ff158 in pense::r_interface::PenseEnRegression(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:560 #18 0x00000074f120 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:775 #19 0x0000008e55aa in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #20 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #21 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #23 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #24 0x000000877d67 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #25 0x000000877d67 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2456 #26 0x000000a1829e in do_mapply /data/gannet/ripley/R/svn/R-devel/src/main/mapply.c:113 #27 0x0000008ceba2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #28 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #29 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #31 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #32 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #33 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #34 0x00000088abfe in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #35 0x00000085d106 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #36 0x0000008921a1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #37 0x0000008ceba2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #38 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #39 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x000000923481 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #41 0x00000085dc9c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #42 0x000000894c63 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3998 #43 0x000000a95c46 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #44 0x0000008dbdb1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152 #45 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #46 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x000000923481 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #48 0x00000085dc9c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #49 0x000000923481 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #50 0x0000008a6cc1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #51 0x0000008a6cc1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5849 #52 0x0000008dea1c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7862 #53 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #54 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #56 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #57 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #58 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #59 0x0000008921a1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #60 0x0000008ceba2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #61 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #62 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #64 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #65 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #66 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #67 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #68 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #69 0x0000008e36a5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #70 0x0000008e36a5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8103 #71 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #72 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #74 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #75 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #76 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #77 0x000000a02488 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #78 0x000000a02488 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #79 0x000000a1056a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #80 0x000000a10602 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #81 0x0000004131bf in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #82 0x7fb03ec115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #83 0x7fb03ec116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #84 0x000000413ba4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413ba4) (BuildId: 0c03d4154a5b678104cbaeb4a17a1709e99fc88d) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'double' #0 0x7bb01ecb59fc in double& arma::access::rw(double const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/access.hpp:26 #1 0x7bb01ecb59fc in arma::Mat::colptr(unsigned int) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7478 #2 0x7bb01ecb59fc in arma::subview::extract(arma::Mat&, arma::subview const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:1648 #3 0x7bb01f3fa34e in arma::quasi_unwrap >::quasi_unwrap(arma::subview const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/unwrap.hpp:362 #4 0x7bb01f3fa34e in void arma::glue_join_cols::apply, arma::subview >(arma::Mat_noalias::elem_type>&, arma::Glue, arma::subview, arma::glue_join_cols> const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/glue_join_meat.hpp:91 #5 0x7bb01f3fa34e in arma::Mat::Mat, arma::subview, arma::glue_join_cols>(arma::Glue, arma::subview, arma::glue_join_cols> const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:6240 #6 0x7bb01f3fa34e in nsoptim::PredictorResponseData::RemoveObservation(unsigned int) const nsoptim/objective/../container/data.hpp:62 #7 0x7bb01f5493ba in std::forward_list > pense::enpy_psc_internal::ComputeLoo > > >(nsoptim::LsRegressionLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, unsigned int, unsigned int, nsoptim::AugmentedLarsOptimizer > >*, std::forward_list, std::allocator > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_psc.hpp:139 #8 0x7bb01f47cce3 in std::forward_list > > >, std::allocator > > > > > pense::enpy_psc_internal::ComputePscs > >, void>(nsoptim::LsRegressionLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > >) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_psc.hpp:357 #9 0x7bb01f4579fc in std::forward_list > > >, std::allocator > > > > > pense::PrincipalSensitiviyComponents > > >(nsoptim::LsRegressionLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > > const&, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_psc.hpp:439 #10 0x7bb01f4579fc in std::forward_list > > >, std::allocator > > > > > pense::enpy_initest_internal::ComputeENPY > > >(pense::SLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > > const&, pense::enpy_initest_internal::PyConfiguration const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_initest.hpp:217 #11 0x7bb01f40f4bf in std::forward_list > > >, std::allocator > > > > > pense::PenaYohaiInitialEstimators > > >(pense::SLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, nsoptim::AugmentedLarsOptimizer > > const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/enpy_initest.hpp:464 #12 0x7bb01f93e2e6 in EnpyInitialEstimatesImpl > >, pense::CDPense > > > /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:183 #13 0x7bb01f93e2e6 in std::forward_list > >::Coefficients, std::allocator > >::Coefficients> >, std::allocator > >::Coefficients, std::allocator > >::Coefficients> > > > (anonymous namespace)::EnpyInitialEstimates > > >(pense::SLoss const&, std::forward_list > >::PenaltyFunction, std::allocator > >::PenaltyFunction> > const&, SEXPREC*, SEXPREC*, SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, nsoptim::_metrics_internal::Metrics<0>*) [clone .isra.0] /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:230 #14 0x7bb01f8f9d20 in PenseRegressionImpl > >, nsoptim::RegressionCoefficients > > > /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:271 #15 0x7bb01f8552b1 in PenseMMPenaltyImpl > >, nsoptim::EnPenalty> /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:370 #16 0x7bb01f8552b1 in PenseMMDispatch /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:428 #17 0x7bb01f7ff158 in PensePenaltyDispatch /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:503 #18 0x7bb01f7ff158 in pense::r_interface::PenseEnRegression(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*) /data/gannet/ripley/R/packages/tests-gcc-SAN/pense/src/r_pense_regression.cc:560 #19 0x00000074f120 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:775 #20 0x0000008e55aa in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #21 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #22 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #23 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #24 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #25 0x000000877d67 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #26 0x000000877d67 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2456 #27 0x000000a1829e in do_mapply /data/gannet/ripley/R/svn/R-devel/src/main/mapply.c:113 #28 0x0000008ceba2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #29 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #30 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #32 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #33 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #34 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #35 0x00000088abfe in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #36 0x00000085d106 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #37 0x0000008921a1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #38 0x0000008ceba2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #39 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #40 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x000000923481 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x00000085dc9c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #43 0x000000894c63 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3998 #44 0x000000a95c46 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #45 0x0000008dbdb1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152 #46 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #47 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x000000923481 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #49 0x00000085dc9c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #50 0x000000923481 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #51 0x0000008a6cc1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #52 0x0000008a6cc1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5849 #53 0x0000008dea1c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7862 #54 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #55 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #57 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #58 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #59 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #60 0x0000008921a1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #61 0x0000008ceba2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #62 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #63 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #65 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #66 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #67 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #68 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #69 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #70 0x0000008e36a5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #71 0x0000008e36a5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8103 #72 0x0000008bbdeb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #73 0x00000085c642 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x00000087238a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #75 0x00000087644a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #76 0x00000085cce3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #77 0x00000085cce3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #78 0x000000a02488 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #79 0x000000a02488 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #80 0x000000a1056a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #81 0x000000a10602 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #82 0x0000004131bf in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #83 0x7fb03ec115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #84 0x7fb03ec116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #85 0x000000413ba4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413ba4) (BuildId: 0c03d4154a5b678104cbaeb4a17a1709e99fc88d) [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘migration_guide.Rmd’