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Type 'q()' to quit R. > library(testthat) > library(pathfindR) Loading required package: pathfindR.data > > test_check("pathfindR", filter = "search-and-enrichment-wrapper") java_compat.h:45:36: runtime error: signed integer overflow: 2098784246 * 31 cannot be represented in type 'int' #0 0x7be0024acde1 in java_string_hashcode /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/java_compat.h:45 #1 0x7be0024acde1 in operator() /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/java_compat.cpp:53 #2 0x7be0024afe15 in java_node_order(Rcpp::Vector<16, Rcpp::PreserveStorage>, Rcpp::Vector<16, Rcpp::PreserveStorage>) /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/java_compat.cpp:61 #3 0x7be00241df91 in _pathfindR_java_node_order /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/RcppExports.cpp:41 #4 0x0000007501b6 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:757 #5 0x0000008ed68a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8700 #6 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #7 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #8 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #9 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #10 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #11 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #12 0x0000008949ae in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585 #13 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #14 0x00000087721b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001 #15 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #16 0x00000089c521 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975 #17 0x0000008d6c82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #18 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #19 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #22 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #24 0x00000089d613 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3993 #25 0x0000008d6c82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #30 0x00000088089a in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x00000088089a in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #32 0x000000499fd6 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #33 0x000000a9e3b6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #34 0x0000008e3e91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #35 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #36 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #39 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #41 0x000000a0b608 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #42 0x000000a0b608 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #43 0x000000a1a8fa in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #44 0x000000a1a992 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #45 0x00000041306f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #46 0x7fe022a12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #47 0x7fe022a12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #48 0x000000413a14 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a14) (BuildId: 297d95be9130b3a5d291eb5a204eb2de3aa8fdce) java_compat.h:45:36: runtime error: signed integer overflow: 2098784275 * 31 cannot be represented in type 'int' #0 0x7be0024a3631 in java_string_hashcode /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/java_compat.h:45 #1 0x7be0024a3631 in java_neighbour_order(Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<16, Rcpp::PreserveStorage>) /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/java_compat.cpp:86 #2 0x7be00241e48e in _pathfindR_java_neighbour_order /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/RcppExports.cpp:53 #3 0x0000007501b6 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:757 #4 0x0000008ed68a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8700 #5 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #6 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #7 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #8 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #9 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #10 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #11 0x0000008949ae in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585 #12 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #13 0x00000087721b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001 #14 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #15 0x00000089c521 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975 #16 0x0000008d6c82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #17 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #18 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #21 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #23 0x00000089d613 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3993 #24 0x0000008d6c82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #25 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #26 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #29 0x00000088089a in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x00000088089a in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #31 0x000000499fd6 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #32 0x000000a9e3b6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #33 0x0000008e3e91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #34 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #35 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #38 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #40 0x000000a0b608 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #41 0x000000a0b608 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #42 0x000000a1a8fa in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #43 0x000000a1a992 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #44 0x00000041306f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #45 0x7fe022a12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #46 0x7fe022a12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #47 0x000000413a14 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a14) (BuildId: 297d95be9130b3a5d291eb5a204eb2de3aa8fdce) java_compat.h:45:36: runtime error: signed integer overflow: 2098784275 * 31 cannot be represented in type 'int' #0 0x7be00245e513 in java_string_hashcode /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/java_compat.h:45 #1 0x7be00245e513 in run_greedy_search(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<16, Rcpp::PreserveStorage>, int, int, int, double, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/greedy_search.cpp:215 #2 0x7be00241d6c8 in _pathfindR_run_greedy_search /data/gannet/ripley/R/packages/tests-gcc-SAN/pathfindR/src/RcppExports.cpp:29 #3 0x00000074fc36 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:790 #4 0x0000008ed68a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8700 #5 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #6 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #7 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #8 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #9 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #10 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #11 0x00000088cf48 in applydefine /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3388 #12 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #13 0x00000087721b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001 #14 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #15 0x000000884e0f in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2883 #16 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #17 0x00000087721b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001 #18 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #19 0x000000884e0f in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2883 #20 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #21 0x00000087721b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001 #22 0x000000863446 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #23 0x00000089c521 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975 #24 0x0000008d6c82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #25 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #26 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #29 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #31 0x00000089d613 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3993 #32 0x0000008d6c82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #33 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #34 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #37 0x00000088089a in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x00000088089a in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #39 0x000000499fd6 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #40 0x000000a9e3b6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #41 0x0000008e3e91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #42 0x0000008c3ee3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #43 0x00000086296a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x00000087acaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x00000087ec5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #46 0x000000863018 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x000000863018 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #48 0x000000a0b608 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #49 0x000000a0b608 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #50 0x000000a1a8fa in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #51 0x000000a1a992 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #52 0x00000041306f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #53 0x7fe022a12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #54 0x7fe022a12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #55 0x000000413a14 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a14) (BuildId: 297d95be9130b3a5d291eb5a204eb2de3aa8fdce) [ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ] > > proc.time() user system elapsed 19.961 0.963 35.397