R Under development (unstable) (2026-07-10 r90234) -- "Unsuffered Consequences"
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Platform: x86_64-pc-linux-gnu

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> pkgname <- "nVennR2"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> library('nVennR2')
> 
> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
> base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv')
> cleanEx()
> nameEx("estimateExhaustiveRunTime")
> ### * estimateExhaustiveRunTime
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: estimateExhaustiveRunTime
> ### Title: Estimates the time taken by minimization steps when preparing a
> ###   diagram with the exhaustive method at a given depth
> ### Aliases: estimateExhaustiveRunTime
> 
> ### ** Examples
> 
> estimateExhaustiveRunTime(exampledf, 4)
[1] 7.511532
> 
> 
> 
> cleanEx()
> nameEx("getVennRegion")
> ### * getVennRegion
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: getVennRegion
> ### Title: Gets a list of the elements in a region of the diagram
> ### Aliases: getVennRegion
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> #Both commands are equivalent:
> getVennRegion(myv, 3)
[[1]]
[1] "a"

[[2]]
[1] "c"

> getVennRegion(myv, c("Set1", "Set2"))
[[1]]
[1] "a"

[[2]]
[1] "c"

> 
> 
> 
> cleanEx()
> nameEx("getVennSetNames")
> ### * getVennSetNames
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: getVennSetNames
> ### Title: Gets the names of the sets
> ### Aliases: getVennSetNames
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> getVennSetNames(myv)
[[1]]
[1] "Set1"

[[2]]
[1] "Set2"

> 
> 
> 
> cleanEx()
> nameEx("getVennSvg")
> ### * getVennSvg
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: getVennSvg
> ### Title: Get the svg code of an nVenn diagram
> ### Aliases: getVennSvg
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> getVennSvg(myv)
[1] "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" viewBox=\"0 0 700 500\">\n<defs>\n<style type=\"text/css\"><![CDATA[\n  .borderLine_1038564373 {\n\t   stroke: none;\n\t   fill-opacity: 0.4000;\n  }\n  .outLine_1038564373 {\n\t   stroke-width: 1.0000;\n\t   fill: none;\n  }\n  .circle_1038564373 {\n\t   stroke: #888888;\n\t   stroke-width: 0.5;\n\t   fill: none;\n    pointer-events: all;\n  }\n  .spcircle_1038564373 {\n\t   stroke: #FF2222;\n\t   stroke-width: 1;\n\t   fill: #000000;\n\t   opacity: 0.2;\n    pointer-events: all;\n  }\n  .tLabel_1038564373 {\n\t   font-family: Arial;\n    pointer-events: none;\n\t   font-size: 16px;\n\t   text-anchor: middle;\n\t   alignment-baseline: central;\n  }\n  .nLabel_1038564373 {\n\t   font-family: Arial;\n    pointer-events: none;\n\t   font-size: 12px;\n\t   text-anchor: middle;\n\t   alignment-baseline: central;\n  }\n  .belong_1038564373 {\n\t   font-family: Arial;\n    pointer-events: none;\n\t   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145.57 234.06 147.98 246.08 \n C 150.39 258.09 150.22 264.49 154.10 276.16  C 157.98 287.83 160.42 294.17 167.36 304.43 \n C 174.31 314.70 178.98 319.80 188.83 327.47  C 198.68 335.14 204.77 338.53 216.62 342.77 \n C 228.48 347.02 235.43 348.52 248.11 348.69  C 260.78 348.87 267.85 347.67 280.00 343.65 \n C 292.14 339.63 298.50 336.39 308.83 328.60  C 319.15 320.81 324.26 315.56 331.61 304.69 \n C 338.95 293.82 342.14 287.11 345.54 274.26  C 348.95 261.41 349.85 253.79 348.64 240.45 \n C 347.44 227.11 344.79 219.94 339.52 207.54  C 334.24 195.15 329.18 190.12 322.28 178.46 \n C 315.37 166.80 311.91 160.93 305.00 149.24  Z\" />\n</symbol>\n<symbol id=\"bl1_1038564373\">\n<path d=\"M 301.33 163.85  C 291.86 158.11 286.31 155.77 275.73 152.89  C 265.15 150.00 259.33 149.29 248.44 149.41 \n C 237.55 149.53 231.77 150.38 221.29 153.49  C 210.81 156.59 205.35 159.03 196.06 164.94 \n C 186.76 170.84 182.17 174.70 174.81 183.02  C 167.46 191.33 164.06 196.37 159.27 206.51 \n C 154.48 216.66 152.61 222.54 150.86 233.72  C 149.10 244.91 148.98 251.11 150.49 262.42 \n C 152.00 273.73 153.81 279.72 158.40 290.28  C 162.98 300.84 167.41 305.22 173.41 315.23 \n C 179.40 325.23 182.40 330.26 188.36 340.31  C 194.32 350.36 197.30 355.40 203.21 365.46 \n C 209.11 375.53 212.05 380.57 217.90 390.63  C 223.74 400.69 226.64 405.72 232.42 415.76 \n C 238.20 425.80 240.40 431.12 246.79 440.82  C 253.18 450.52 255.77 456.70 264.37 464.26 \n C 272.96 471.82 278.96 475.14 289.77 478.61  C 300.59 482.08 307.22 482.72 318.44 481.61 \n C 329.66 480.49 336.00 478.53 345.88 473.04  C 355.76 467.55 360.91 463.14 367.83 454.16 \n C 374.74 445.17 377.68 439.08 380.45 428.11  C 383.22 417.14 382.45 410.67 381.69 399.31 \n C 380.92 387.96 378.67 382.53 376.62 371.33  C 374.57 360.13 373.55 354.52 371.42 343.32 \n C 369.29 332.12 368.21 326.51 365.96 315.33  C 363.71 304.15 362.54 298.55 360.17 287.40 \n C 357.81 276.25 356.57 270.69 354.13 259.59  C 351.69 248.49 350.99 242.85 347.98 231.90 \n C 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width=\"700\" height=\"500\" style=\"fill:#fff;stroke-width:0\" />\n<use class=\"p0_1038564373 borderLine_1038564373\" xlink:href=\"#bl0_1038564373\"/>\n<use class=\"p1_1038564373 borderLine_1038564373\" xlink:href=\"#bl1_1038564373\"/>\n<use class=\"q0_1038564373 outLine_1038564373\" xlink:href=\"#bl0_1038564373\"/>\n<use class=\"q1_1038564373 outLine_1038564373\" xlink:href=\"#bl1_1038564373\"/>\n<circle onclick=\"fromCircle(1)\" class=\"circle_1038564373\" cx=\"188.6364\" cy=\"89.2842\" r=\"69.2842\" />\n<text class=\"nLabel_1038564373\" x=\"188.64\" y=\"83.28\">1</text>\n<text class=\"belong_1038564373\" x=\"188.64\" y=\"95.28\">(1)</text>\n<circle onclick=\"fromCircle(2)\" class=\"circle_1038564373\" cx=\"311.3636\" cy=\"410.7158\" r=\"69.2842\" />\n<text class=\"nLabel_1038564373\" x=\"311.36\" y=\"404.72\">1</text>\n<text class=\"belong_1038564373\" x=\"311.36\" y=\"416.72\">(2)</text>\n<circle onclick=\"fromCircle(3)\" class=\"circle_1038564373\" cx=\"249.5709\" cy=\"249.3438\" r=\"97.9829\" />\n<text class=\"nLabel_1038564373\" x=\"249.57\" y=\"243.34\">2</text>\n<text class=\"belong_1038564373\" x=\"249.57\" y=\"255.34\">(1, 2)</text>\n<rect class=\"p0_1038564373 borderLine_1038564373\" data-nbit=\"0\" x=\"500.00\" y=\"50.00\" width=\"30.00\" height=\"15.00\" />\n<rect class=\"q0_1038564373\" x=\"500.00\" y=\"50.00\" width=\"30.00\" height=\"15.00\" />\n<text class=\"legend_1038564373\" x=\"540.00\" y=\"65.00\">Set1</text>\n<rect class=\"p1_1038564373 borderLine_1038564373\" data-nbit=\"1\" x=\"500.00\" y=\"90.00\" width=\"30.00\" height=\"15.00\" />\n<rect class=\"q1_1038564373\" x=\"500.00\" y=\"90.00\" width=\"30.00\" height=\"15.00\" />\n<text class=\"legend_1038564373\" x=\"540.00\" y=\"105.00\">Set2</text>\n</svg>\n"
> 
> 
> 
> cleanEx()
> nameEx("listVennRegions")
> ### * listVennRegions
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: listVennRegions
> ### Title: Lists the elements in every region of the diagram
> ### Aliases: listVennRegions
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> mylist <- listVennRegions(myv)
> mylist
$`(Set1)`
[1] "b"

$`(Set2)`
[1] "d"

$`(Set1, Set2)`
[1] "a" "c"

> 
> 
> 
> cleanEx()
> nameEx("nVennDiagram")
> ### * nVennDiagram
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: nVennDiagram
> ### Title: Creates nVenn plot
> ### Aliases: nVennDiagram
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> 
> 
> 
> cleanEx()
> nameEx("nVennR2")
> ### * nVennR2
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: nVennR2
> ### Title: nVennR2
> ### Aliases: nVennR2
> 
> ### ** Examples
> 
> library(nVennR2)
> myv <- nVennDiagram(exampledf, verbose=FALSE)
topol.h:212:16: runtime error: load of value 50, which is not a valid value for type 'bool'
    #0 0x7b31a54162c1 in blData::operator=(blData&&) /data/gannet/ripley/R/packages/tests-gcc-SAN/nVennR2/src/topol.h:212
    #1 0x7b31a54162c1 in borderLine::operator=(borderLine&&) /data/gannet/ripley/R/packages/tests-gcc-SAN/nVennR2/src/topol.h:1413
    #2 0x7b31a557bbd7 in nVennDiagram(SEXPREC*, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, bool, unsigned int, unsigned int) /data/gannet/ripley/R/packages/tests-gcc-SAN/nVennR2/src/nVenn2.cpp:178
    #3 0x7b31a543e48d in _nVennR2_nVennDiagram /data/gannet/ripley/R/packages/tests-gcc-SAN/nVennR2/src/RcppExports.cpp:39
    #4 0x000000750130 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:775
    #5 0x0000008ed89a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8700
    #6 0x0000008c40f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533
    #7 0x000000862b7a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #8 0x00000087aeba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398
    #9 0x00000087ee6d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314
    #10 0x000000863228 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333
    #11 0x000000863228 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278
    #12 0x000000894bbe in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585
    #13 0x000000863656 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230
    #14 0x000000a0b788 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264
    #15 0x000000a0b788 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317
    #16 0x000000a1aa7a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1237
    #17 0x000000a1ab12 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1244
    #18 0x00000041306f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29
    #19 0x7f31b8012574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #20 0x7f31b8012627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #21 0x000000413a14 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a14) (BuildId: 0917cdc867c186725bcba1424f3d64db7fd3641c)

> myv <- setVennOpts(myv, opacity=0.2, fontSize=14)
> 
> 
> 
> 
> cleanEx()
> nameEx("plotVenn")
> ### * plotVenn
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: plotVenn
> ### Title: Plot nVenn diagram
> ### Aliases: plotVenn
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> plotVenn(myv) 
> 
> 
> 
> 
> cleanEx()
> nameEx("readVennSVG")
> ### * readVennSVG
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: readVennSVG
> ### Title: Creates nVenn plot
> ### Aliases: readVennSVG
> 
> ### ** Examples
> 
> if (file.exists('example.svg')){
+   readVennSVG('example.svg')
+ }
> 
> 
> 
> cleanEx()
> nameEx("rotateVenn")
> ### * rotateVenn
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: rotateVenn
> ### Title: Rotate a diagram
> ### Aliases: rotateVenn
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> myv <- rotateVenn(myv, 45)
> 
> 
> 
> cleanEx()
> nameEx("setVennColor")
> ### * setVennColor
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: setVennColor
> ### Title: Change a set color
> ### Aliases: setVennColor
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> myv <- setVennColor(myv, "Set2", "black")
> myv <- setVennColor(myv, "Set1", "#ffff00")
> 
> 
> 
> cleanEx()
> nameEx("setVennColors")
> ### * setVennColors
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: setVennColors
> ### Title: Change set colors
> ### Aliases: setVennColors
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> mypalette <- c("black", "#ffff00", "red")
> myv <- setVennColors(myv, mypalette)
> 
> 
> 
> cleanEx()
> nameEx("setVennOpts")
> ### * setVennOpts
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: setVennOpts
> ### Title: Set graphical parameters of an nVenn object diagram.
> ### Aliases: setVennOpts
> 
> ### ** Examples
> 
> myv <- nVennDiagram(exampledf)
Step  1  finished.
Step  2  finished.
Step  3  finished.
Step  4  finished.
Step  5  finished.
Step  6  finished.
Step  7  finished.
> myv <- setVennOpts(myv, showRegions=FALSE, opacity=0.2, lineWidth=2)
> 
> 
> 
> cleanEx()
> nameEx("setVennPalette")
> ### * setVennPalette
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: setVennPalette
> ### Title: Change the color palette for a diagram
> ### Aliases: setVennPalette
> 
> ### ** Examples
> 
> myv <- nVennDiagram(list(Set1=c("a", "b", "c"), Set2=c("a", "c", "d")), verbose=FALSE)
> myv <- setVennPalette(myv, 2)
> myv <- setVennPalette(myv, 3)
> 
> 
> 
> cleanEx()
> nameEx("setVennSkin")
> ### * setVennSkin
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: setVennSkin
> ### Title: Set nVenn diagram appearance
> ### Aliases: setVennSkin
> 
> ### ** Examples
> 
> theme <- list(opacity=0.2, lineWidth=2, fontSize=14, showRegions=FALSE,
+               palette=2, colors=c("black"))
> myv <- nVennDiagram(exampledf)
Step  1  finished.
Step  2  finished.
Step  3  finished.
Step  4  finished.
Step  5  finished.
Step  6  finished.
Step  7  finished.
> myv <- setVennSkin(myv, theme)
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  151.8 1.636 162.459 0 0 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')