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Type 'q()' to quit R. > library(testthat) > library(multinma) For execution on a local, multicore CPU with excess RAM we recommend calling options(mc.cores = parallel::detectCores()) Attaching package: 'multinma' The following objects are masked from 'package:stats': dgamma, pgamma, qgamma > > test_check("multinma") TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x53100028148c for type 'struct Scalar', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4231f0a in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4231f0a in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4231f0a in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4231f0a in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4231f0a in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4231f0a in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4231f0a in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1>, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da4231f0a in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da4231f0a in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> >(Eigen::DenseBase, -1, 1, 0, -1, 1> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da4231f0a in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> >(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da4231f0a in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da4883d54 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:124 #12 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x53100028148c for type 'struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4231e94 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da4231e94 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da4231e94 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da4231e94 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da4231e94 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da4231e94 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1>, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da4231e94 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #7 0x7f8da4231e94 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> >(Eigen::DenseBase, -1, 1, 0, -1, 1> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #8 0x7f8da4231e94 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> >(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #9 0x7f8da4231e94 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #10 0x7f8da4883d54 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:124 #11 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:100: runtime error: store to misaligned address 0x53100028148c for type 'struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4231e1e in Eigen::internal::assign_op, stan::math::var_value >::assignCoeff(stan::math::var_value&, stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da4231e1e in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4231e1e in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4231e1e in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4231e1e in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4231e1e in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4231e1e in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1>, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da4231e1e in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da4231e1e in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> >(Eigen::DenseBase, -1, 1, 0, -1, 1> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da4231e1e in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> >(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da4231e1e in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da4883d54 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:124 #12 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x53100028148c for type 'const struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be 88 0a 28 00 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 ^ #0 0x7f8da48804e2 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da48804e2 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da48804e2 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da48804e2 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da48804e2 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #9 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #10 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #20 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #21 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #22 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #23 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #24 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #25 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #26 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:22: runtime error: reference binding to misaligned address 0x53100028148c for type 'const struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be 88 0a 28 00 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 ^ #0 0x7f8da48804a4 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da48804a4 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da48804a4 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da48804a4 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #8 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #9 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #10 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #12 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #13 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #14 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #15 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #16 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #17 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #18 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #19 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #20 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #21 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #22 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #23 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #24 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #25 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #26 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #27 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #28 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #29 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #30 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #31 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #32 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #33 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #34 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #43 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #44 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #51 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #67 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #68 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #69 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #85 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #86 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #87 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #94 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #95 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #96 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #97 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #98 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #99 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #100 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #101 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #102 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #103 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #104 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #105 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #106 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #107 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #108 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #109 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x53100028148c for type 'const struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be 88 0a 28 00 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 ^ #0 0x7f8da4880466 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da4880466 in auto stan::math::value_of, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da4880466 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da4880466 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4880466 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4880466 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #9 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #10 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #12 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #25 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x53100028148c for type 'const struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be 88 0a 28 00 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 ^ #0 0x7f8da4880245 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da4880245 in auto stan::math::value_of, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da4880245 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da4880245 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4880245 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4880245 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #9 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #10 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #12 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #25 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x531000281494 for type 'const struct var_value', which requires 8 byte alignment 0x531000281494: note: pointer points here 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 10 53 00 00 e8 0a 28 00 ^ #0 0x7f8da487f221 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da487f221 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da487f221 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da487f221 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da487f221 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #9 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #10 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #20 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #21 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #22 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #23 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #24 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #25 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #26 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:22: runtime error: reference binding to misaligned address 0x531000281494 for type 'const struct var_value', which requires 8 byte alignment 0x531000281494: note: pointer points here 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 10 53 00 00 e8 0a 28 00 ^ #0 0x7f8da487f1b9 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da487f1b9 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da487f1b9 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da487f1b9 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #8 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #9 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #10 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #12 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #13 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #14 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #15 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #16 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #17 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #18 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #19 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #20 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #21 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #22 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #23 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #24 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #25 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #26 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #27 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #28 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #29 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #30 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #31 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #32 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #33 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #34 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #43 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #44 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #51 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #67 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #68 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #69 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #85 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #86 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #87 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #94 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #95 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #96 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #97 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #98 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #99 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #100 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #101 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #102 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #103 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #104 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #105 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #106 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #107 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #108 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #109 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x531000281494 for type 'const struct var_value', which requires 8 byte alignment 0x531000281494: note: pointer points here 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 10 53 00 00 e8 0a 28 00 ^ #0 0x7f8da487f151 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da487f151 in auto stan::math::value_of, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da487f151 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da487f151 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da487f151 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da487f151 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #9 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #10 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #12 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #25 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x531000281494 for type 'const struct var_value', which requires 8 byte alignment 0x531000281494: note: pointer points here 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 10 53 00 00 e8 0a 28 00 ^ #0 0x7f8da487ef86 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da487ef86 in auto stan::math::value_of, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da487ef86 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da487ef86 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da487ef86 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da487ef86 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #9 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::DenseBase, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #10 0x7f8da48814cc in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> >(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #11 0x7f8da48814cc in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:190 #12 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da48814cc in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da48814cc in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da48814cc in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da48814cc in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da48814cc in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da48814cc in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da48814cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da48814cc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da48814cc in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #25 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x53100028167c for type 'struct Scalar', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4555e45 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4555e45 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4555e45 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4555e45 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #7 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #12 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x53100028167c for type 'struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4555e31 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da4555e31 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da4555e31 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #6 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #7 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #8 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #9 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #10 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #11 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82: runtime error: constructor call on misaligned address 0x531000281774 for type 'struct vari_type', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4555e89 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #1 0x7f8da4555e89 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #2 0x7f8da4555e89 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4555e89 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4555e89 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #13 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_value', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4556067 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da4556067 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4556067 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4556067 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4556067 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4556067 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #14 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_value', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be 00 00 00 00 00 00 00 00 be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da455604b in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da455604b in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da455604b in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da455604b in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da455604b in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da455604b in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #14 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: constructor call on misaligned address 0x531000281774 for type 'struct vari_base', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be 00 00 00 00 00 00 00 00 be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4556037 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da4556037 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4556037 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4556037 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4556037 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4556037 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #14 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_base', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be 00 00 00 00 00 00 00 00 be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4556001 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da4556001 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #2 0x7f8da4556001 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #3 0x7f8da4556001 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #4 0x7f8da4556001 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da4556001 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da4556001 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #10 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #15 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_value', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be 40 4c 6c a8 8d 7f 00 00 be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4555fcb in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da4555fcb in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4555fcb in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4555fcb in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4555fcb in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4555fcb in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #14 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_value', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be 60 4c 6c a8 8d 7f 00 00 be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4555fa3 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da4555fa3 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4555fa3 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4555fa3 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4555fa3 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4555fa3 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #14 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_value', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f be be be be be be be be be be be be ^ #0 0x7f8da4555f62 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da4555f62 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4555f62 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4555f62 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4555f62 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4555f62 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #14 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:130: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_value', which requires 8 byte alignment 0x531000281774: note: pointer points here be be be be 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 be be be be ^ #0 0x7f8da4555eb3 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:130 #1 0x7f8da4555eb3 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4555eb3 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4555eb3 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4555eb3 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4555eb3 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #9 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #14 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:100: runtime error: store to misaligned address 0x53100028167c for type 'struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be be ^ #0 0x7f8da4555c1c in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da4555c1c in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4555c1c in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4555c1c in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4881639 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4881639 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Matrix const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::assign_op, double> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #7 0x7f8da4881639 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da4881639 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator= const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da4881639 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0>, (void*)0>(Eigen::Product const, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) const::{lambda(auto:1 const&)#1}, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const>, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da48842e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:128 #12 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52: runtime error: constructor call on misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4886b3d in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #1 0x7f8da4886b3d in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #2 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:21: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da48866ca in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:21 #1 0x7f8da48866ca in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da48866ca in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da48866e6 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #1 0x7f8da48866e6 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da48866e6 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25: runtime error: constructor call on misaligned address 0x531000281a5c for type 'struct vari_value', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da48866fa in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #1 0x7f8da48866fa in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da48866fa in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106: runtime error: member access within misaligned address 0x531000281a5c for type 'struct vari_value', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab239 in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106 #1 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #2 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106: runtime error: member access within misaligned address 0x531000281a5c for type 'struct vari_value', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab213 in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106 #1 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #2 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106: runtime error: constructor call on misaligned address 0x531000281a5c for type 'struct vari_base', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab1f5 in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106 #1 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #2 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x531000281a5c for type 'struct vari_base', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab1b9 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da41ab1b9 in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106 #2 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #3 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #4 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #5 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106: runtime error: member access within misaligned address 0x531000281a5c for type 'struct vari_value', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab17d in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106 #1 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #2 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106: runtime error: member access within misaligned address 0x531000281a5c for type 'struct vari_value', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab141 in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106 #1 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #2 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106: runtime error: member access within misaligned address 0x531000281a5c for type 'struct vari_value', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab0ff in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:106 #1 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #2 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:107: runtime error: member access within misaligned address 0x531000281a5c for type 'struct vari_value', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ab0a4 in stan::math::vari_value::vari_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:107 #1 0x7f8da48843e4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #2 0x7f8da48843e4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da48843e4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4886729 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #1 0x7f8da4886729 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da4886729 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da488674c in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #1 0x7f8da488674c in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da488674c in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23: runtime error: constructor call on misaligned address 0x531000281a74 for type 'struct decay_t', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da488678c in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #1 0x7f8da488678c in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da488678c in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83: runtime error: reference binding to misaligned address 0x531000281a74 for type 'struct __as_base ', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d654 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83 #1 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #2 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85: runtime error: member access within misaligned address 0x531000281a74 for type 'struct arena_matrix', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d946 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #1 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #2 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85: runtime error: constructor call on misaligned address 0x531000281a74 for type 'struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d932 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #1 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #2 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156:12: runtime error: reference binding to misaligned address 0x531000281a74 for type 'struct __as_base ', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d81b in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156 #1 0x7f8da422d81b in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #3 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #4 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #5 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:73: runtime error: member access within misaligned address 0x531000281a74 for type 'struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d807 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da422d807 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #3 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #4 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #5 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:34: runtime error: member call on misaligned address 0x531000281a74 for type 'struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d7f3 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da422d7f3 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #3 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #4 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #5 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:30: runtime error: reference binding to misaligned address 0x531000281a74 for type 'struct __as_base ', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d7df in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da422d7df in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da422d7df in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #4 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #5 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #6 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:109: runtime error: member access within misaligned address 0x531000281a74 for type 'struct MapBase', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d7cb in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da422d7cb in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da422d7cb in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #4 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #5 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #6 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173:12: runtime error: reference binding to misaligned address 0x531000281a74 for type 'struct __as_base ', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d7b7 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173 #1 0x7f8da422d7b7 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da422d7b7 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da422d7b7 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #5 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #6 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #7 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:15: runtime error: member access within misaligned address 0x531000281a74 for type 'struct MapBase', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d7a3 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da422d7a3 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da422d7a3 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da422d7a3 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #5 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #6 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #7 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: member access within misaligned address 0x531000281a74 for type 'struct MapBase', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d76b in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da422d76b in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da422d76b in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da422d76b in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #5 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #6 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #7 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: constructor call on misaligned address 0x531000281a7c for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000281a7c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d740 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da422d740 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da422d740 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da422d740 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #5 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #6 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #7 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146:102: runtime error: member access within misaligned address 0x531000281a7c for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000281a7c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d72c in Eigen::internal::variable_if_dynamic::variable_if_dynamic(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146 #1 0x7f8da422d72c in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #2 0x7f8da422d72c in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #3 0x7f8da422d72c in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #4 0x7f8da422d72c in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #5 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #6 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #7 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #8 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:46: runtime error: member access within misaligned address 0x531000281a74 for type 'struct MapBase', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d710 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da422d710 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da422d710 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da422d710 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #5 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #6 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #7 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179:27: runtime error: member call on misaligned address 0x531000281a74 for type 'struct MapBase', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d6d2 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179 #1 0x7f8da422d6d2 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da422d6d2 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da422d6d2 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #5 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #6 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #7 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:58: runtime error: member access within misaligned address 0x531000281a74 for type 'struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da422d6be in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da422d6be in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4884464 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:23 #3 0x7f8da4884464 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #4 0x7f8da4884464 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #5 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:24: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 7c 16 28 00 ^ #0 0x7f8da48867a7 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:24 #1 0x7f8da48867a7 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da48867a7 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:24: runtime error: constructor call on misaligned address 0x531000281a8c for type 'struct decay_t', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4886b92 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:24 #1 0x7f8da4886b92 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da4886b92 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255:7: runtime error: member access within misaligned address 0x531000281a8c for type 'struct Map', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4886bb4 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #1 0x7f8da4886bb4 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:24 #2 0x7f8da4886bb4 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #3 0x7f8da4886bb4 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #4 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: runtime error: member access within misaligned address 0x531000281a8c for type 'struct SparseMapBase', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429b2b6 in Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0>::SparseMapBase(Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50 #1 0x7f8da48844b2 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #2 0x7f8da48844b2 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:24 #3 0x7f8da48844b2 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #4 0x7f8da48844b2 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #5 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: runtime error: member access within misaligned address 0x531000281a8c for type 'struct SparseMapBase', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429b226 in Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0>::SparseMapBase(Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50 #1 0x7f8da48844b2 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #2 0x7f8da48844b2 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:24 #3 0x7f8da48844b2 in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #4 0x7f8da48844b2 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #5 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 00 00 00 00 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 7c 16 28 00 ^ #0 0x7f8da4886bcf in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #1 0x7f8da4886bcf in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da4886bcf in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25: runtime error: constructor call on misaligned address 0x531000281acc for type 'struct decay_t', which requires 8 byte alignment 0x531000281acc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da488669f in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:25 #1 0x7f8da488669f in stan::math::vari_value* stan::math::internal::make_csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:52 #2 0x7f8da488669f in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:129 #3 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x53100028167c for type 'const struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da422e5ca in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da422e5ca in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da422e5ca in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da422e5ca in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da422e5ca in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da422e5ca in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da422e5ca in Eigen::Matrix, -1, 1, 0, -1, 1>& Eigen::PlainObjectBase, -1, 1, 0, -1, 1> >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da422e5ca in void Eigen::PlainObjectBase, -1, 1, 0, -1, 1> >::_init1, -1, 1, 0, -1, 1>, void>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #8 0x7f8da422e5ca in Eigen::Matrix, -1, 1, 0, -1, 1>::Matrix, -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #9 0x7f8da4884502 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:130 #10 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x53100028167c for type 'const struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da422e6b8 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da422e6b8 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da422e6b8 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da422e6b8 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da422e6b8 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da422e6b8 in Eigen::Matrix, -1, 1, 0, -1, 1>& Eigen::PlainObjectBase, -1, 1, 0, -1, 1> >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #6 0x7f8da422e6b8 in void Eigen::PlainObjectBase, -1, 1, 0, -1, 1> >::_init1, -1, 1, 0, -1, 1>, void>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #7 0x7f8da422e6b8 in Eigen::Matrix, -1, 1, 0, -1, 1>::Matrix, -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #8 0x7f8da4884502 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:130 #9 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:100: runtime error: load of misaligned address 0x53100028167c for type 'const struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da422e649 in Eigen::internal::assign_op, stan::math::var_value >::assignCoeff(stan::math::var_value&, stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da422e649 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da422e649 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1> >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da422e649 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da422e649 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da422e649 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Matrix, -1, 1, 0, -1, 1>&, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da422e649 in Eigen::Matrix, -1, 1, 0, -1, 1>& Eigen::PlainObjectBase, -1, 1, 0, -1, 1> >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da422e649 in void Eigen::PlainObjectBase, -1, 1, 0, -1, 1> >::_init1, -1, 1, 0, -1, 1>, void>, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #8 0x7f8da422e649 in Eigen::Matrix, -1, 1, 0, -1, 1>::Matrix, -1, 1, 0, -1, 1>, void> >(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #9 0x7f8da4884502 in auto stan::math::csr_matrix_times_vector, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(int, int, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:130 #10 0x7f8da3f2240f in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1929 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da4558c9b in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da4558c9b in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #2 0x7f8da4558c9b in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #3 0x7f8da4558c9b in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #4 0x7f8da4558c9b in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da4558c9b in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da4558c9b in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #15 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845:22: runtime error: reference binding to misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da4558555 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #1 0x7f8da4558555 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #2 0x7f8da4558555 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #3 0x7f8da4558555 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4558555 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4558555 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da4558525 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da4558525 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #2 0x7f8da4558525 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #3 0x7f8da4558525 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #4 0x7f8da4558525 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da4558525 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da4558525 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #15 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_type', which requires 8 byte alignment 0x531000281774: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da45584e6 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da45584e6 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #2 0x7f8da45584e6 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #3 0x7f8da45584e6 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #4 0x7f8da45584e6 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da45584e6 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da45584e6 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #15 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: reference binding to misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da45586ac in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da45586ac in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #2 0x7f8da45586ac in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #3 0x7f8da45586ac in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #4 0x7f8da45586ac in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da45586ac in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da45586ac in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #15 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da4558675 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da4558675 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #2 0x7f8da4558675 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #3 0x7f8da4558675 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #4 0x7f8da4558675 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da4558675 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da4558675 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #15 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_type', which requires 8 byte alignment 0x531000281774: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da4558645 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da4558645 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #2 0x7f8da4558645 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #3 0x7f8da4558645 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #4 0x7f8da4558645 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da4558645 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da4558645 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #15 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845:47: runtime error: reference binding to misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da4558615 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:845 #1 0x7f8da4558615 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #2 0x7f8da4558615 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #3 0x7f8da4558615 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4558615 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4558615 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404:33: runtime error: reference binding to misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da45585e5 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #1 0x7f8da45585e5 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #2 0x7f8da45585e5 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da45585e5 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da45585e5 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #13 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775:22: runtime error: reference binding to misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da45585b5 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #1 0x7f8da45585b5 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da45585b5 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da45585b5 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #12 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:80:122: runtime error: load of misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da455874c in Eigen::internal::scalar_product_op::operator()(double const&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:80 #1 0x7f8da455874c in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #2 0x7f8da455874c in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da455874c in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da455874c in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #13 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x531000281dcc for type 'struct Scalar', which requires 8 byte alignment 0x531000281dcc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4558f1a in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4558f1a in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4558f1a in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4558f1a in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #12 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x531000281dcc for type 'struct var_value', which requires 8 byte alignment 0x531000281dcc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4558f06 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da4558f06 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da4558f06 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #7 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #8 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #9 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #10 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #11 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82: runtime error: constructor call on misaligned address 0x531000281ec4 for type 'struct vari_type', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4558f35 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #1 0x7f8da4558f35 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #2 0x7f8da4558f35 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4558f35 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4558f35 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #13 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_value', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4558f5f in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da4558f5f in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4558f5f in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4558f5f in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4558f5f in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4558f5f in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_value', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da45591ad in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da45591ad in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da45591ad in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da45591ad in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da45591ad in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da45591ad in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: constructor call on misaligned address 0x531000281ec4 for type 'struct vari_base', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455918b in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da455918b in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da455918b in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da455918b in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da455918b in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da455918b in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_base', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4559139 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da4559139 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #2 0x7f8da4559139 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #3 0x7f8da4559139 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #4 0x7f8da4559139 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #5 0x7f8da4559139 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #6 0x7f8da4559139 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #7 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #8 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #10 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #11 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #13 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #14 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #15 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #16 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #17 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_value', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da45590e7 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da45590e7 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da45590e7 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da45590e7 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da45590e7 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da45590e7 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_value', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da45590a3 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da45590a3 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da45590a3 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da45590a3 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da45590a3 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da45590a3 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_value', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 0b 2c 3f aa 1a bd 1c 40 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4559046 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da4559046 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4559046 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4559046 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4559046 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4559046 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:130: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_value', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 0b 2c 3f aa 1a bd 1c 40 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4559223 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:130 #1 0x7f8da4559223 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da4559223 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #3 0x7f8da4559223 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4559223 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4559223 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #10 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #11 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #12 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #13 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #14 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:100: runtime error: store to misaligned address 0x531000281dcc for type 'struct var_value', which requires 8 byte alignment 0x531000281dcc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4558cd9 in Eigen::internal::assign_op, double>::assignCoeff(stan::math::var_value&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da4558cd9 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4558cd9 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >, Eigen::internal::assign_op, double>, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4558cd9 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da455b090 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da455b090 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da455b090 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da455b090 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> >(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da455b090 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const>, (void*)0>(Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da455b090 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:145 #12 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39: runtime error: constructor call on misaligned address 0x5310002821ac for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002821ac: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455bb9b in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #1 0x7f8da455bb9b in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #2 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14: runtime error: member access within misaligned address 0x5310002821ac for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002821ac: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455bbc5 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14 #1 0x7f8da455bbc5 in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da455bbc5 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #3 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x5310002821ac for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002821ac: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455b93c in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da455b93c in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da455b93c in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #3 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x5310002821ac for type 'struct vari_base', which requires 8 byte alignment 0x5310002821ac: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455b91a in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da455b91a in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da455b91a in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #3 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x5310002821ac for type 'struct vari_base', which requires 8 byte alignment 0x5310002821ac: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455baf1 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da455baf1 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da455baf1 in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da455baf1 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #4 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x5310002821ac for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002821ac: note: pointer points here 00 00 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455b95e in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da455b95e in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da455b95e in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #3 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455ba95 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da455ba95 in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da455ba95 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #3 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455b9f7 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::multiply({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #1 0x7f8da455b9f7 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da455b9f7 in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da455b9f7 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #4 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146: runtime error: constructor call on misaligned address 0x5310002821bc for type 'struct arena_t', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455ba5e in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::multiply({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #1 0x7f8da455ba5e in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da455ba5e in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da455ba5e in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #4 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455ba27 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::multiply({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #1 0x7f8da455ba27 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da455ba27 in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da455ba27 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #4 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146: runtime error: constructor call on misaligned address 0x5310002821d4 for type 'struct arena_t', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da455b8d6 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::multiply({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #1 0x7f8da455b8d6 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da455b8d6 in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da455b8d6 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #4 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16: runtime error: member access within misaligned address 0x5310002821ac for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002821ac: note: pointer points here 00 00 00 00 f8 66 6c a8 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 ^ #0 0x7f8da455b8b4 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16 #1 0x7f8da455b8b4 in void stan::math::reverse_pass_callback, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>(stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da455b8b4 in auto stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:146 #3 0x7f8da3f224a1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:1926 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x5310002822c4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002822c4: note: pointer points here 00 00 00 00 00 08 28 00 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 ^ #0 0x7f8da4912712 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da4912712 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4912712 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4912712 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4912712 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #11 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #25 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:22: runtime error: reference binding to misaligned address 0x5310002822c4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002822c4: note: pointer points here 00 00 00 00 00 08 28 00 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 ^ #0 0x7f8da49126d4 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da49126d4 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da49126d4 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da49126d4 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #8 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #9 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #10 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #11 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #20 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #21 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #23 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #24 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #25 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #26 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002822c4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002822c4: note: pointer points here 00 00 00 00 00 08 28 00 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 ^ #0 0x7f8da4912696 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da4912696 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4912696 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4912696 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4912696 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #11 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #25 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002822c4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002822c4: note: pointer points here 00 00 00 00 00 08 28 00 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 ^ #0 0x7f8da4912570 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da4912570 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4912570 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4912570 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4912570 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #11 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #25 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x5310002822cc for type 'const struct var_value', which requires 8 byte alignment 0x5310002822cc: note: pointer points here 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 10 53 00 00 60 08 28 00 ^ #0 0x7f8da4910afb in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da4910afb in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4910afb in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4910afb in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4910afb in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #11 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #25 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:22: runtime error: reference binding to misaligned address 0x5310002822cc for type 'const struct var_value', which requires 8 byte alignment 0x5310002822cc: note: pointer points here 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 10 53 00 00 60 08 28 00 ^ #0 0x7f8da4910ee5 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da4910ee5 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4910ee5 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4910ee5 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #8 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #9 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #10 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #11 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #20 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #21 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #23 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #24 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #25 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #26 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002822cc for type 'const struct var_value', which requires 8 byte alignment 0x5310002822cc: note: pointer points here 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 10 53 00 00 60 08 28 00 ^ #0 0x7f8da4911359 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da4911359 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4911359 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4911359 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4911359 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #11 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #25 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002822cc for type 'const struct var_value', which requires 8 byte alignment 0x5310002822cc: note: pointer points here 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 10 53 00 00 60 08 28 00 ^ #0 0x7f8da491118e in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da491118e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da491118e in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da491118e in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da491118e in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4912ed9 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4912ed9 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4912ed9 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4912ed9 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4912ed9 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4912ed9 in void Eigen::internal::gemv_dense_selector<2, 0, true>::run, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:229 #11 0x7f8da4912ed9 in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da4915665 in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da4915665 in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da4915665 in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da4915665 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da4915665 in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da4915665 in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, double> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op, double> const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da4915665 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #21 0x7f8da4915665 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #22 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #23 0x7f8da4915665 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, (void*)0>(Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #24 0x7f8da4917174 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:57 #25 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #26 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #27 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #28 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #29 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #30 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #31 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #32 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #33 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #34 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #35 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #36 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #45 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #46 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #69 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #70 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #71 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #87 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #88 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #89 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #96 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #97 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #98 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #99 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #100 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #101 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #102 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #103 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #104 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #105 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #106 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #107 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #108 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #109 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #110 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #112 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39: runtime error: constructor call on misaligned address 0x531000282b6c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000282b6c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49187c5 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #1 0x7f8da49187c5 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #2 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14: runtime error: member access within misaligned address 0x531000282b6c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000282b6c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49187a3 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14 #1 0x7f8da49187a3 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da49187a3 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000282b6c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000282b6c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4918779 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4918779 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4918779 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x531000282b6c for type 'struct vari_base', which requires 8 byte alignment 0x531000282b6c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4917f89 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4917f89 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4917f89 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x531000282b6c for type 'struct vari_base', which requires 8 byte alignment 0x531000282b6c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4917f37 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da4917f37 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4917f37 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4917f37 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #4 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000282b6c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000282b6c: note: pointer points here 00 00 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4917ee5 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4917ee5 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4917ee5 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x531000282b74 for type 'struct ._anon_1955', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4917e89 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4917e89 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4917e89 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58: runtime error: member access within misaligned address 0x531000282b74 for type 'struct ._anon_1955', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4917e59 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #1 0x7f8da4917e59 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4917e59 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4917e59 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #4 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58: runtime error: member access within misaligned address 0x531000282b74 for type 'struct ._anon_1955', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49180b4 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #1 0x7f8da49180b4 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da49180b4 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da49180b4 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #4 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58: runtime error: constructor call on misaligned address 0x531000282b8c for type 'struct arena_t', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da491804d in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #1 0x7f8da491804d in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da491804d in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da491804d in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #4 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83: runtime error: reference binding to misaligned address 0x531000282b8c for type 'struct __as_base ', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da491800f in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83 #1 0x7f8da491800f in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #2 0x7f8da491800f in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da491800f in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da491800f in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85: runtime error: member access within misaligned address 0x531000282b8c for type 'struct arena_matrix', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4917fd1 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #1 0x7f8da4917fd1 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #2 0x7f8da4917fd1 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da4917fd1 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da4917fd1 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156:12: runtime error: reference binding to misaligned address 0x531000282b8c for type 'struct __as_base ', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49186ba in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156 #1 0x7f8da49186ba in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da49186ba in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da49186ba in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da49186ba in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da49186ba in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #6 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:73: runtime error: member access within misaligned address 0x531000282b8c for type 'struct Map', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da491866e in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da491866e in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da491866e in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da491866e in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da491866e in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da491866e in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #6 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:34: runtime error: member call on misaligned address 0x531000282b8c for type 'struct Map', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4918622 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da4918622 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4918622 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da4918622 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da4918622 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da4918622 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #6 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:109: runtime error: member access within misaligned address 0x531000282b8c for type 'struct MapBase', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49185d6 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da49185d6 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da49185d6 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da49185d6 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #4 0x7f8da49185d6 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #5 0x7f8da49185d6 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #6 0x7f8da49185d6 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #7 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:15: runtime error: member access within misaligned address 0x531000282b8c for type 'struct MapBase', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da491858a in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da491858a in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da491858a in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da491858a in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da491858a in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da491858a in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da491858a in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da491858a in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #8 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: member access within misaligned address 0x531000282b8c for type 'struct MapBase', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49184e2 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da49184e2 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da49184e2 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da49184e2 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da49184e2 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da49184e2 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da49184e2 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da49184e2 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #8 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: constructor call on misaligned address 0x531000282b94 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000282b94: note: pointer points here 60 52 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da491844a in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da491844a in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da491844a in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da491844a in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da491844a in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da491844a in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da491844a in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da491844a in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #8 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146:102: runtime error: member access within misaligned address 0x531000282b94 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000282b94: note: pointer points here 60 52 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49183fe in Eigen::internal::variable_if_dynamic::variable_if_dynamic(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146 #1 0x7f8da49183fe in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #2 0x7f8da49183fe in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #3 0x7f8da49183fe in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #4 0x7f8da49183fe in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #5 0x7f8da49183fe in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #6 0x7f8da49183fe in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #7 0x7f8da49183fe in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #8 0x7f8da49183fe in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #9 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:46: runtime error: member access within misaligned address 0x531000282b8c for type 'struct MapBase', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49183aa in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da49183aa in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da49183aa in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da49183aa in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da49183aa in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da49183aa in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da49183aa in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da49183aa in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #8 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:46: runtime error: constructor call on misaligned address 0x531000282b9c for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000282b9c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4918312 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da4918312 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da4918312 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da4918312 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4918312 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da4918312 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da4918312 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da4918312 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #8 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146:102: runtime error: member access within misaligned address 0x531000282b9c for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000282b9c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da49182c6 in Eigen::internal::variable_if_dynamic::variable_if_dynamic(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146 #1 0x7f8da49182c6 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #2 0x7f8da49182c6 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #3 0x7f8da49182c6 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #4 0x7f8da49182c6 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #5 0x7f8da49182c6 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #6 0x7f8da49182c6 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #7 0x7f8da49182c6 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #8 0x7f8da49182c6 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #9 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179:27: runtime error: member call on misaligned address 0x531000282b8c for type 'struct MapBase', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 32 00 00 00 00 00 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4918272 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179 #1 0x7f8da4918272 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da4918272 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da4918272 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4918272 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #5 0x7f8da4918272 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da4918272 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da4918272 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #8 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:58: runtime error: member access within misaligned address 0x531000282b8c for type 'struct Map', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 32 00 00 00 00 00 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4918226 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da4918226 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4918226 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da4918226 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da4918226 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da4918226 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #6 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58: runtime error: member access within misaligned address 0x531000282b74 for type 'struct ._anon_1955', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da49180e4 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #1 0x7f8da49180e4 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da49180e4 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da49180e4 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #4 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58: runtime error: constructor call on misaligned address 0x531000282bac for type 'struct arena_t', which requires 8 byte alignment 0x531000282bac: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4918735 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::multiply({lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #1 0x7f8da4918735 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4918735 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4918735 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #4 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16: runtime error: member access within misaligned address 0x531000282b6c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000282b6c: note: pointer points here 00 00 00 00 58 67 6c a8 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4917e30 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::reverse_pass_callback_vari(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16 #1 0x7f8da4917e30 in void stan::math::reverse_pass_callback, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>(stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4917e30 in auto stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:58 #3 0x7f8da3f2aec5 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2455 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member call on misaligned address 0x5310002826bc for type 'struct vari_type', which requires 8 byte alignment 0x5310002826bc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 22 69 2c a4 07 cb fb 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41e2916 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da41e2916 in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #2 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member access within misaligned address 0x5310002826bc for type 'struct vari_type', which requires 8 byte alignment 0x5310002826bc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 22 69 2c a4 07 cb fb 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41e28ee in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da41e28ee in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #2 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x5310002826bc for type 'const struct vari_value', which requires 8 byte alignment 0x5310002826bc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 22 69 2c a4 07 cb fb 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41e28aa in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da41e28aa in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da41e28aa in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #3 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: reference binding to misaligned address 0x5310002826c4 for type 'const double', which requires 8 byte alignment 0x5310002826c4: note: pointer points here 8d 7f 00 00 22 69 2c a4 07 cb fb 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 96 14 08 eb ^ #0 0x7f8da41e287f in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da41e287f in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da41e287f in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #3 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x5310002826bc for type 'const struct vari_value', which requires 8 byte alignment 0x5310002826bc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 22 69 2c a4 07 cb fb 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41e286b in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da41e286b in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da41e286b in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #3 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27: runtime error: load of misaligned address 0x5310002826c4 for type 'const double', which requires 8 byte alignment 0x5310002826c4: note: pointer points here 8d 7f 00 00 22 69 2c a4 07 cb fb 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 96 14 08 eb ^ #0 0x7f8da41e298a in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #1 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43: runtime error: constructor call on misaligned address 0x531000282bc4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e2d31 in stan::math::internal::callback_vari::type, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #1 0x7f8da41e2d31 in stan::math::var_value::type, void> stan::math::make_callback_var(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #2 0x7f8da41e2d31 in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #3 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:17: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e2d53 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:17 #1 0x7f8da41e2d53 in stan::math::internal::callback_vari::type, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41e2d53 in stan::math::var_value::type, void> stan::math::make_callback_var(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da41e2d53 in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #4 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e2ca2 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41e2ca2 in stan::math::internal::callback_vari::type, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41e2ca2 in stan::math::var_value::type, void> stan::math::make_callback_var(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da41e2ca2 in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #4 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: constructor call on misaligned address 0x531000282bc4 for type 'struct vari_value', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e2c80 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41e2c80 in stan::math::internal::callback_vari::type, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41e2c80 in stan::math::var_value::type, void> stan::math::make_callback_var(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da41e2c80 in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #4 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e2c3b in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41e2c3b in stan::math::internal::callback_vari::type, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41e2c3b in stan::math::var_value::type, void> stan::math::make_callback_var(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da41e2c3b in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #4 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e2cfe in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41e2cfe in stan::math::internal::callback_vari::type, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41e2cfe in stan::math::var_value::type, void> stan::math::make_callback_var(stan::math::var_value const&)::{lambda(auto:1&)#1}>(double&&, stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da41e2cfe in auto stan::math::inv_logit(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:27 #4 0x7f8da3f2f03d in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2479 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54: runtime error: member access within misaligned address 0x5310002826d4 for type 'struct vari_type', which requires 8 byte alignment 0x5310002826d4: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 96 14 08 eb fa 11 fd 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41acf27 in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #1 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54: runtime error: member access within misaligned address 0x5310002826d4 for type 'struct vari_type', which requires 8 byte alignment 0x5310002826d4: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 96 14 08 eb fa 11 fd 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41aceb9 in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #1 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_type', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 0b 2c 3f aa 1a bd 1c 40 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41ace45 in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #1 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_type', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 0b 2c 3f aa 1a bd 1c 40 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41acdd1 in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #1 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43: runtime error: constructor call on misaligned address 0x531000282be4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282be4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41acfe8 in stan::math::internal::callback_vari::type, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>* stan::math::make_callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #1 0x7f8da41acfe8 in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #2 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:17: runtime error: member access within misaligned address 0x531000282be4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282be4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ad0af in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::callback_vari(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:17 #1 0x7f8da41ad0af in stan::math::internal::callback_vari::type, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>* stan::math::make_callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41ad0af in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #3 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000282be4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282be4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ad093 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::callback_vari(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41ad093 in stan::math::internal::callback_vari::type, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>* stan::math::make_callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41ad093 in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #3 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: constructor call on misaligned address 0x531000282be4 for type 'struct vari_value', which requires 8 byte alignment 0x531000282be4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ad07f in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::callback_vari(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41ad07f in stan::math::internal::callback_vari::type, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>* stan::math::make_callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41ad07f in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #3 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000282be4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282be4: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 98 98 80 b2 cc 00 22 40 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ad04f in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::callback_vari(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41ad04f in stan::math::internal::callback_vari::type, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>* stan::math::make_callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41ad04f in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #3 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000282be4 for type 'struct callback_vari', which requires 8 byte alignment 0x531000282be4: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 98 98 80 b2 cc 00 22 40 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ad01f in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::callback_vari(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da41ad01f in stan::math::internal::callback_vari::type, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>* stan::math::make_callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>(double&&, stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da41ad01f in stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:54 #3 0x7f8da3f2ec01 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2469 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82: runtime error: constructor call on misaligned address 0x5310002836dc for type 'struct vari_type', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af5a3 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #1 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #2 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x5310002836dc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af758 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da41af758 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #3 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x5310002836dc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af73c in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da41af73c in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #3 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: constructor call on misaligned address 0x5310002836dc for type 'struct vari_base', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af728 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da41af728 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #3 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x5310002836dc for type 'struct vari_base', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af6f2 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da41af6f2 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #2 0x7f8da41af6f2 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #3 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #4 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x5310002836dc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af6bc in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da41af6bc in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #3 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x5310002836dc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af694 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da41af694 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #3 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126: runtime error: member access within misaligned address 0x5310002836dc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af653 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:126 #1 0x7f8da41af653 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #3 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:130: runtime error: member access within misaligned address 0x5310002836dc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836dc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41af5c3 in stan::math::vari_value::vari_value(double, bool) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:130 #1 0x7f8da41af5c3 in stan::math::var_value::var_value(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:82 #2 0x7f8da3e77b9c in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:502 #3 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002837b4 for type 'Scalar', which requires 8 byte alignment 0x5310002837b4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4370bb6 in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4370bb6 in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4370bb6 in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #3 0x7f8da4370bb6 in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #4 0x7f8da4370bb6 in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4372665 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4372665 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da4372665 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::Matrix > >(Eigen::DenseBase, Eigen::Matrix > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da4372665 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::Matrix > >(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da4372665 in stan::math::arena_matrix, void>::arena_matrix, Eigen::Matrix >, (void*)0>(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da4372665 in stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>::ops_partials_edge(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:144 #13 0x7f8da4642c2d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:69 #14 0x7f8da4642c2d in auto stan::math::make_partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:123 #15 0x7f8da4642c2d in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:73 #16 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #17 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #18 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #19 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x5310002837b4 for type 'double', which requires 8 byte alignment 0x5310002837b4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4370b3e in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da4370b3e in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #2 0x7f8da4370b3e in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #3 0x7f8da4370b3e in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4372665 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4372665 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da4372665 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::Matrix > >(Eigen::DenseBase, Eigen::Matrix > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da4372665 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::Matrix > >(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da4372665 in stan::math::arena_matrix, void>::arena_matrix, Eigen::Matrix >, (void*)0>(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da4372665 in stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>::ops_partials_edge(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:144 #12 0x7f8da4642c2d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:69 #13 0x7f8da4642c2d in auto stan::math::make_partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:123 #14 0x7f8da4642c2d in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:73 #15 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #16 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #17 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #18 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #19 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #20 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #21 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #22 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #23 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #24 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #25 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #26 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #27 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #28 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #36 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #37 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #38 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #39 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #44 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #51 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #60 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #61 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #62 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #78 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #79 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #80 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #87 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #88 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #89 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #96 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #97 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #98 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #99 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #100 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #101 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:102: runtime error: store to misaligned address 0x5310002837b4 for type 'double', which requires 8 byte alignment 0x5310002837b4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4370f70 in Eigen::internal::assign_op::assignCoeff(double&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da4370f70 in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4370f70 in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #3 0x7f8da4370f70 in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #4 0x7f8da4370f70 in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4372665 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4372665 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da4372665 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::Matrix > >(Eigen::DenseBase, Eigen::Matrix > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da4372665 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::Matrix > >(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da4372665 in stan::math::arena_matrix, void>::arena_matrix, Eigen::Matrix >, (void*)0>(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da4372665 in stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>::ops_partials_edge(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:144 #13 0x7f8da4642c2d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:69 #14 0x7f8da4642c2d in auto stan::math::make_partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:123 #15 0x7f8da4642c2d in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:73 #16 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #17 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #18 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #19 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002837bc for type 'Scalar', which requires 8 byte alignment 0x5310002837bc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da436f39a in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da436f39a in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da436f39a in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #3 0x7f8da436f39a in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #4 0x7f8da436f39a in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4372665 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4372665 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da4372665 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::Matrix > >(Eigen::DenseBase, Eigen::Matrix > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da4372665 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::Matrix > >(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da4372665 in stan::math::arena_matrix, void>::arena_matrix, Eigen::Matrix >, (void*)0>(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da4372665 in stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>::ops_partials_edge(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:144 #13 0x7f8da4642c2d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:69 #14 0x7f8da4642c2d in auto stan::math::make_partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:123 #15 0x7f8da4642c2d in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:73 #16 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #17 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #18 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #19 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x5310002837bc for type 'double', which requires 8 byte alignment 0x5310002837bc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da436f79d in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da436f79d in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #2 0x7f8da436f79d in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #3 0x7f8da436f79d in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4372665 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4372665 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da4372665 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::Matrix > >(Eigen::DenseBase, Eigen::Matrix > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da4372665 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::Matrix > >(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da4372665 in stan::math::arena_matrix, void>::arena_matrix, Eigen::Matrix >, (void*)0>(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da4372665 in stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>::ops_partials_edge(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:144 #12 0x7f8da4642c2d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:69 #13 0x7f8da4642c2d in auto stan::math::make_partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:123 #14 0x7f8da4642c2d in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:73 #15 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #16 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #17 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #18 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #19 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #20 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #21 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #22 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #23 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #24 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #25 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #26 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #27 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #28 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #36 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #37 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #38 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #39 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #44 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #51 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #60 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #61 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #62 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #78 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #79 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #80 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #87 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #88 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #89 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #96 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #97 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #98 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #99 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #100 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #101 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:102: runtime error: store to misaligned address 0x5310002837bc for type 'double', which requires 8 byte alignment 0x5310002837bc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da436f725 in Eigen::internal::assign_op::assignCoeff(double&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da436f725 in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da436f725 in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #3 0x7f8da436f725 in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #4 0x7f8da436f725 in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4372665 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4372665 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da4372665 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseNullaryOp, Eigen::Matrix > >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da4372665 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::Matrix > >(Eigen::DenseBase, Eigen::Matrix > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da4372665 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::Matrix > >(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da4372665 in stan::math::arena_matrix, void>::arena_matrix, Eigen::Matrix >, (void*)0>(Eigen::CwiseNullaryOp, Eigen::Matrix > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #12 0x7f8da4372665 in stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>::ops_partials_edge(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:144 #13 0x7f8da4642c2d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:69 #14 0x7f8da4642c2d in auto stan::math::make_partials_propagator, -1, 1, 0, -1, 1> const&, double const&, double const&>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:123 #15 0x7f8da4642c2d in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:73 #16 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #17 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #18 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #19 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002839f4 for type 'Scalar', which requires 8 byte alignment 0x5310002839f4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da463f3b8 in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da463f3b8 in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da463f3b8 in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #3 0x7f8da463f3b8 in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #4 0x7f8da3e5ec92 in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3e5ec92 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3e5ec92 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3e5ec92 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3e5ec92 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da3e5ec92 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da3e5ec92 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da46438bb in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:96 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x5310002839f4 for type 'double', which requires 8 byte alignment 0x5310002839f4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da463eb38 in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da463eb38 in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #2 0x7f8da463eb38 in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #3 0x7f8da3e5ec92 in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da3e5ec92 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da3e5ec92 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da3e5ec92 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da3e5ec92 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da3e5ec92 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #9 0x7f8da3e5ec92 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da46438bb in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:96 #11 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #12 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:102: runtime error: store to misaligned address 0x5310002839f4 for type 'double', which requires 8 byte alignment 0x5310002839f4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da463eaf0 in Eigen::internal::assign_op::assignCoeff(double&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da463eaf0 in Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da463eaf0 in void Eigen::internal::unaligned_dense_assignment_loop::run, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0> >(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>&, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:411 #3 0x7f8da463eaf0 in Eigen::internal::dense_assignment_loop, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>, 3, 0>::run(Eigen::internal::generic_dense_assignment_kernel, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:434 #4 0x7f8da3e5ec92 in void Eigen::internal::call_dense_assignment_loop, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3e5ec92 in Eigen::internal::Assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3e5ec92 in void Eigen::internal::call_assignment_no_alias, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3e5ec92 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::assign_op >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3e5ec92 in void Eigen::internal::call_assignment, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::Map, 0, Eigen::Stride<0, 0> >&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #9 0x7f8da3e5ec92 in Eigen::Map, 0, Eigen::Stride<0, 0> >& Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::operator=, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:66 #10 0x7f8da3e5ec92 in stan::math::arena_matrix, void>& stan::math::arena_matrix, void>::operator=, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> >(Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::Array const> const> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #11 0x7f8da46438bb in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:96 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39: runtime error: constructor call on misaligned address 0x531000283acc for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283acc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315ffd in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #1 0x7f8da4315ffd in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #2 0x7f8da4315ffd in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #3 0x7f8da4315ffd in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #4 0x7f8da4315ffd in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #5 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #6 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #7 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14: runtime error: member access within misaligned address 0x531000283acc for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283acc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315d64 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14 #1 0x7f8da4315d64 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315d64 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315d64 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315d64 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315d64 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283acc for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283acc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315d3a in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315d3a in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315d3a in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315d3a in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315d3a in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315d3a in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x531000283acc for type 'struct vari_base', which requires 8 byte alignment 0x531000283acc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315d18 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315d18 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315d18 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315d18 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315d18 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315d18 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x531000283acc for type 'struct vari_base', which requires 8 byte alignment 0x531000283acc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315ea2 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da4315ea2 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4315ea2 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4315ea2 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da4315ea2 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da4315ea2 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da4315ea2 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #8 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #9 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283acc for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283acc: note: pointer points here 00 00 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315e49 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315e49 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315e49 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315e49 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315e49 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315e49 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x531000283ad4 for type 'struct ._anon_2069', which requires 8 byte alignment 0x531000283ad4: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315ded in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315ded in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315ded in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315ded in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315ded in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315ded in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: member access within misaligned address 0x531000283ad4 for type 'struct ._anon_2069', which requires 8 byte alignment 0x531000283ad4: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315dbd in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da4315dbd in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4315dbd in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4315dbd in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da4315dbd in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da4315dbd in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da4315dbd in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #8 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #9 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: member access within misaligned address 0x531000283ad4 for type 'struct ._anon_2069', which requires 8 byte alignment 0x531000283ad4: note: pointer points here 8d 7f 00 00 34 39 28 00 10 53 00 00 18 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315d8d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da4315d8d in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4315d8d in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4315d8d in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da4315d8d in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da4315d8d in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da4315d8d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #8 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #9 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: constructor call on misaligned address 0x531000283aec for type 'struct arena_matrix', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43158f6 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da43158f6 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da43158f6 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da43158f6 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da43158f6 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da43158f6 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da43158f6 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #8 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #9 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83: runtime error: reference binding to misaligned address 0x531000283aec for type 'struct __as_base ', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43158b8 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83 #1 0x7f8da43158b8 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #2 0x7f8da43158b8 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da43158b8 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da43158b8 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #5 0x7f8da43158b8 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #6 0x7f8da43158b8 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #7 0x7f8da43158b8 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #8 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #9 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #10 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85: runtime error: member access within misaligned address 0x531000283aec for type 'struct arena_matrix', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da431587a in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #1 0x7f8da431587a in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #2 0x7f8da431587a in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da431587a in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da431587a in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #5 0x7f8da431587a in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #6 0x7f8da431587a in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #7 0x7f8da431587a in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #8 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #9 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #10 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156:12: runtime error: reference binding to misaligned address 0x531000283aec for type 'struct __as_base ', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43155d9 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156 #1 0x7f8da43155d9 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da43155d9 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da43155d9 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da43155d9 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da43155d9 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da43155d9 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da43155d9 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da43155d9 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #10 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #11 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:73: runtime error: member access within misaligned address 0x531000283aec for type 'struct Map', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da431558d in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da431558d in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da431558d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da431558d in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da431558d in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da431558d in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da431558d in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da431558d in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da431558d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #10 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #11 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:34: runtime error: member call on misaligned address 0x531000283aec for type 'struct Map', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315835 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da4315835 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4315835 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da4315835 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da4315835 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da4315835 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da4315835 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da4315835 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da4315835 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #10 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #11 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:30: runtime error: reference binding to misaligned address 0x531000283aec for type 'struct __as_base ', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43157e9 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da43157e9 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da43157e9 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da43157e9 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #4 0x7f8da43157e9 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #5 0x7f8da43157e9 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #6 0x7f8da43157e9 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #7 0x7f8da43157e9 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #8 0x7f8da43157e9 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #9 0x7f8da43157e9 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #10 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #11 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #12 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:109: runtime error: member access within misaligned address 0x531000283aec for type 'struct MapBase', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da431579d in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da431579d in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da431579d in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da431579d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #4 0x7f8da431579d in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #5 0x7f8da431579d in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #6 0x7f8da431579d in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #7 0x7f8da431579d in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #8 0x7f8da431579d in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #9 0x7f8da431579d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #10 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #11 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #12 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173:12: runtime error: reference binding to misaligned address 0x531000283aec for type 'struct __as_base ', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315751 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173 #1 0x7f8da4315751 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da4315751 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da4315751 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4315751 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da4315751 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da4315751 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da4315751 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da4315751 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da4315751 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da4315751 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:15: runtime error: member access within misaligned address 0x531000283aec for type 'struct MapBase', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315705 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da4315705 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da4315705 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da4315705 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4315705 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da4315705 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da4315705 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da4315705 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da4315705 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da4315705 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da4315705 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: member access within misaligned address 0x531000283aec for type 'struct MapBase', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 f4 39 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da431565d in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da431565d in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da431565d in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da431565d in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da431565d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da431565d in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da431565d in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da431565d in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da431565d in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da431565d in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da431565d in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: constructor call on misaligned address 0x531000283af4 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000283af4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315c0e in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da4315c0e in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da4315c0e in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da4315c0e in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4315c0e in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da4315c0e in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da4315c0e in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da4315c0e in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da4315c0e in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da4315c0e in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da4315c0e in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146:102: runtime error: member access within misaligned address 0x531000283af4 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000283af4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315bc2 in Eigen::internal::variable_if_dynamic::variable_if_dynamic(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146 #1 0x7f8da4315bc2 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #2 0x7f8da4315bc2 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #3 0x7f8da4315bc2 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #4 0x7f8da4315bc2 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #5 0x7f8da4315bc2 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #6 0x7f8da4315bc2 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #7 0x7f8da4315bc2 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #8 0x7f8da4315bc2 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #9 0x7f8da4315bc2 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #10 0x7f8da4315bc2 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #11 0x7f8da4315bc2 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #12 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #13 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #14 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:46: runtime error: member access within misaligned address 0x531000283aec for type 'struct MapBase', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 f4 39 28 00 10 53 00 00 18 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315b6e in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da4315b6e in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da4315b6e in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da4315b6e in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4315b6e in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da4315b6e in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da4315b6e in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da4315b6e in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da4315b6e in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da4315b6e in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da4315b6e in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179:27: runtime error: member call on misaligned address 0x531000283aec for type 'struct MapBase', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 f4 39 28 00 10 53 00 00 18 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315a8b in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179 #1 0x7f8da4315a8b in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da4315a8b in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da4315a8b in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da4315a8b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da4315a8b in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da4315a8b in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da4315a8b in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da4315a8b in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da4315a8b in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da4315a8b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #12 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #13 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:58: runtime error: member access within misaligned address 0x531000283aec for type 'struct Map', which requires 8 byte alignment 0x531000283aec: note: pointer points here 00 00 00 00 f4 39 28 00 10 53 00 00 18 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315a3f in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da4315a3f in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da4315a3f in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da4315a3f in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da4315a3f in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da4315a3f in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da4315a3f in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da4315a3f in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da4315a3f in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #10 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #11 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: member access within misaligned address 0x531000283ad4 for type 'struct ._anon_2069', which requires 8 byte alignment 0x531000283ad4: note: pointer points here 8d 7f 00 00 34 39 28 00 10 53 00 00 18 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 f4 39 28 00 ^ #0 0x7f8da4315cbf in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da4315cbf in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4315cbf in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4315cbf in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da4315cbf in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da4315cbf in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da4315cbf in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #8 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #9 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16: runtime error: member access within misaligned address 0x531000283acc for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283acc: note: pointer points here 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 10 53 00 00 18 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315f3f in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16 #1 0x7f8da4315f3f in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315f3f in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315f3f in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315f3f in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315f3f in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39: runtime error: constructor call on misaligned address 0x531000283b0c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43154f1 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #1 0x7f8da43154f1 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #2 0x7f8da43154f1 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #3 0x7f8da43154f1 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #4 0x7f8da43154f1 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #5 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #6 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #7 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14: runtime error: member access within misaligned address 0x531000283b0c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43154dd in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14 #1 0x7f8da43154dd in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da43154dd in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da43154dd in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da43154dd in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da43154dd in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283b0c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43154c1 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da43154c1 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da43154c1 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da43154c1 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da43154c1 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da43154c1 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x531000283b0c for type 'struct vari_base', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43154ad in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da43154ad in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da43154ad in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da43154ad in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da43154ad in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da43154ad in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x531000283b0c for type 'struct vari_base', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315470 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da4315470 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4315470 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4315470 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da4315470 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da4315470 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da4315470 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #8 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #9 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283b0c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da431542c in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da431542c in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da431542c in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da431542c in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da431542c in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da431542c in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283b0c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 80 6b 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43153fd in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da43153fd in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da43153fd in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da43153fd in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da43153fd in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da43153fd in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16: runtime error: member access within misaligned address 0x531000283b0c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b0c: note: pointer points here 10 53 00 00 80 6b 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 b4 3a 28 00 ^ #0 0x7f8da4315cef in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16 #1 0x7f8da4315cef in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315cef in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315cef in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315cef in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315cef in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39: runtime error: constructor call on misaligned address 0x531000283b2c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315faa in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #1 0x7f8da4315faa in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #2 0x7f8da4315faa in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #3 0x7f8da4315faa in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #4 0x7f8da4315faa in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #5 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #6 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #7 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14: runtime error: member access within misaligned address 0x531000283b2c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4316020 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14 #1 0x7f8da4316020 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4316020 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4316020 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4316020 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4316020 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283b2c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315366 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315366 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315366 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315366 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315366 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315366 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x531000283b2c for type 'struct vari_base', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315352 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315352 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315352 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315352 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315352 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315352 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x531000283b2c for type 'struct vari_base', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315315 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da4315315 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da4315315 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da4315315 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da4315315 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da4315315 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da4315315 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #8 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #9 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283b2c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315534 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315534 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315534 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315534 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315534 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315534 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x531000283b2c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 80 6b 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4315505 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da4315505 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da4315505 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da4315505 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da4315505 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da4315505 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16: runtime error: member access within misaligned address 0x531000283b2c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283b2c: note: pointer points here 10 53 00 00 80 6b 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 b4 3a 28 00 ^ #0 0x7f8da43152ca in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16 #1 0x7f8da43152ca in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da43152ca in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da43152ca in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, 0ul, 1ul, 2ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da43152ca in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void>, stan::math::internal::ops_partials_edge, stan::math::internal::ops_partials_edge >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da43152ca in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da464390a in stan::return_type, -1, 1, 0, -1, 1>, double, double>::type stan::math::normal_lpdf, -1, 1, 0, -1, 1>, double, double, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105 #7 0x7f8da3e77ce0 in void model_binomial_1par_namespace::prior_select_lp, -1, 1, 0, -1, 1>, double, double, double, stan::math::var_value, stan::math::accumulator, void>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&, int const&, double const&, double const&, double const&, stan::math::var_value&, stan::math::accumulator, void>&, std::ostream*) /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:512 #8 0x7f8da3f24229 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2597 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x531000283ea4 for type 'Scalar', which requires 8 byte alignment 0x531000283ea4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43766a9 in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da43766a9 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #2 0x7f8da43766a9 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #3 0x7f8da43766a9 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56 #4 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394:68: runtime error: reference binding to misaligned address 0x531000283ea4 for type 'Scalar', which requires 8 byte alignment 0x531000283ea4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da437664b in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #1 0x7f8da437664b in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #2 0x7f8da437664b in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56 #3 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56: runtime error: load of misaligned address 0x531000283ea4 for type 'Scalar', which requires 8 byte alignment 0x531000283ea4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4376455 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56 #1 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x531000283eac for type 'Scalar', which requires 8 byte alignment 0x531000283eac: note: pointer points here 57 24 f1 bf 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43761d4 in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da43761d4 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #2 0x7f8da43761d4 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #3 0x7f8da43761d4 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56 #4 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394:68: runtime error: reference binding to misaligned address 0x531000283eac for type 'Scalar', which requires 8 byte alignment 0x531000283eac: note: pointer points here 57 24 f1 bf 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da437615e in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #1 0x7f8da437615e in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #2 0x7f8da437615e in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56 #3 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56: runtime error: load of misaligned address 0x531000283eac for type 'Scalar', which requires 8 byte alignment 0x531000283eac: note: pointer points here 57 24 f1 bf 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da43760e8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:56 #1 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39: runtime error: constructor call on misaligned address 0x5310002841a4 for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002841a4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ec2a in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #1 0x7f8da429ec2a in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #2 0x7f8da429ec2a in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #3 0x7f8da429ec2a in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #4 0x7f8da429ec2a in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #5 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #6 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14: runtime error: member access within misaligned address 0x5310002841a4 for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002841a4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ec54 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:14 #1 0x7f8da429ec54 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da429ec54 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da429ec54 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da429ec54 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da429ec54 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #7 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x5310002841a4 for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002841a4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ecea in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da429ecea in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da429ecea in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da429ecea in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da429ecea in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da429ecea in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #7 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x5310002841a4 for type 'struct vari_base', which requires 8 byte alignment 0x5310002841a4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ecc8 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da429ecc8 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da429ecc8 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da429ecc8 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da429ecc8 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da429ecc8 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #7 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28: runtime error: member access within misaligned address 0x5310002841a4 for type 'struct vari_base', which requires 8 byte alignment 0x5310002841a4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ec76 in stan::math::vari_base::vari_base() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:28 #1 0x7f8da429ec76 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da429ec76 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da429ec76 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da429ec76 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da429ec76 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da429ec76 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #8 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: member access within misaligned address 0x5310002841a4 for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002841a4: note: pointer points here 00 00 00 00 40 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ee07 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da429ee07 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da429ee07 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da429ee07 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da429ee07 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da429ee07 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #7 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15: runtime error: constructor call on misaligned address 0x5310002841ac for type 'struct ._anon_2029', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429edab in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #1 0x7f8da429edab in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da429edab in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da429edab in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da429edab in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da429edab in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #7 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: member access within misaligned address 0x5310002841ac for type 'struct ._anon_2029', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ed7b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da429ed7b in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da429ed7b in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da429ed7b in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da429ed7b in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da429ed7b in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da429ed7b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #8 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83: runtime error: reference binding to misaligned address 0x5310002841ac for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ed4b in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83 #1 0x7f8da429ed4b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #2 0x7f8da429ed4b in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da429ed4b in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da429ed4b in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #5 0x7f8da429ed4b in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #6 0x7f8da429ed4b in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #7 0x7f8da429ed4b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #8 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #9 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85: runtime error: member access within misaligned address 0x5310002841ac for type 'struct arena_matrix', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ed1b in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #1 0x7f8da429ed1b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #2 0x7f8da429ed1b in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da429ed1b in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da429ed1b in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #5 0x7f8da429ed1b in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #6 0x7f8da429ed1b in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #7 0x7f8da429ed1b in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #8 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #9 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156:12: runtime error: reference binding to misaligned address 0x5310002841ac for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e7de in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156 #1 0x7f8da429e7de in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429e7de in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429e7de in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429e7de in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429e7de in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429e7de in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429e7de in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429e7de in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:73: runtime error: member access within misaligned address 0x5310002841ac for type 'struct Map', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e792 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da429e792 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429e792 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429e792 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429e792 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429e792 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429e792 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429e792 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429e792 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:34: runtime error: member call on misaligned address 0x5310002841ac for type 'struct Map', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e746 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da429e746 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429e746 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429e746 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429e746 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429e746 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429e746 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429e746 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429e746 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:30: runtime error: reference binding to misaligned address 0x5310002841ac for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e6fa in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da429e6fa in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da429e6fa in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da429e6fa in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #4 0x7f8da429e6fa in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #5 0x7f8da429e6fa in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #6 0x7f8da429e6fa in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #7 0x7f8da429e6fa in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #8 0x7f8da429e6fa in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #9 0x7f8da429e6fa in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #10 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #11 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:109: runtime error: member access within misaligned address 0x5310002841ac for type 'struct MapBase', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e6ae in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da429e6ae in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da429e6ae in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da429e6ae in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #4 0x7f8da429e6ae in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #5 0x7f8da429e6ae in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #6 0x7f8da429e6ae in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #7 0x7f8da429e6ae in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #8 0x7f8da429e6ae in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #9 0x7f8da429e6ae in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #10 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #11 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173:12: runtime error: reference binding to misaligned address 0x5310002841ac for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e662 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173 #1 0x7f8da429e662 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e662 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e662 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e662 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e662 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e662 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e662 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e662 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e662 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e662 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:15: runtime error: member access within misaligned address 0x5310002841ac for type 'struct MapBase', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e616 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429e616 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e616 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e616 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e616 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e616 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e616 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e616 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e616 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e616 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e616 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: member access within misaligned address 0x5310002841ac for type 'struct MapBase', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 94 40 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e575 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429e575 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e575 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e575 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e575 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e575 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e575 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e575 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e575 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e575 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e575 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: constructor call on misaligned address 0x5310002841b4 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x5310002841b4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e4f2 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429e4f2 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e4f2 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e4f2 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e4f2 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e4f2 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e4f2 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e4f2 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e4f2 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e4f2 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e4f2 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146:102: runtime error: member access within misaligned address 0x5310002841b4 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x5310002841b4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e4a6 in Eigen::internal::variable_if_dynamic::variable_if_dynamic(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146 #1 0x7f8da429e4a6 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #2 0x7f8da429e4a6 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #3 0x7f8da429e4a6 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #4 0x7f8da429e4a6 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #5 0x7f8da429e4a6 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #6 0x7f8da429e4a6 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #7 0x7f8da429e4a6 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #8 0x7f8da429e4a6 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #9 0x7f8da429e4a6 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #10 0x7f8da429e4a6 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #11 0x7f8da429e4a6 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #12 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #13 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:46: runtime error: member access within misaligned address 0x5310002841ac for type 'struct MapBase', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 94 40 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e459 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429e459 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e459 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e459 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e459 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e459 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e459 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e459 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e459 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e459 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e459 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179:27: runtime error: member call on misaligned address 0x5310002841ac for type 'struct MapBase', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 94 40 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e3a0 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179 #1 0x7f8da429e3a0 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e3a0 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e3a0 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e3a0 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e3a0 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e3a0 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e3a0 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e3a0 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e3a0 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e3a0 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:58: runtime error: member access within misaligned address 0x5310002841ac for type 'struct Map', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 94 40 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e362 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da429e362 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429e362 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429e362 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429e362 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429e362 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429e362 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429e362 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429e362 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: member access within misaligned address 0x5310002841ac for type 'struct ._anon_2029', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 94 40 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e227 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da429e227 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da429e227 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da429e227 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da429e227 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da429e227 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da429e227 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #8 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: constructor call on misaligned address 0x5310002841c4 for type 'struct arena_matrix', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e1c7 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da429e1c7 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da429e1c7 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da429e1c7 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da429e1c7 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da429e1c7 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da429e1c7 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #8 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83: runtime error: reference binding to misaligned address 0x5310002841c4 for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e197 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83 #1 0x7f8da429e197 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #2 0x7f8da429e197 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da429e197 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da429e197 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #5 0x7f8da429e197 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #6 0x7f8da429e197 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #7 0x7f8da429e197 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #8 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #9 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85: runtime error: member access within misaligned address 0x5310002841c4 for type 'struct arena_matrix', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e167 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #1 0x7f8da429e167 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #2 0x7f8da429e167 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #3 0x7f8da429e167 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #4 0x7f8da429e167 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #5 0x7f8da429e167 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #6 0x7f8da429e167 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #7 0x7f8da429e167 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #8 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #9 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156:12: runtime error: reference binding to misaligned address 0x5310002841c4 for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e115 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156 #1 0x7f8da429e115 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429e115 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429e115 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429e115 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429e115 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429e115 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429e115 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429e115 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:73: runtime error: member access within misaligned address 0x5310002841c4 for type 'struct Map', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ebdf in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da429ebdf in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429ebdf in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429ebdf in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429ebdf in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429ebdf in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429ebdf in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429ebdf in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429ebdf in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:34: runtime error: member call on misaligned address 0x5310002841c4 for type 'struct Map', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429eb93 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da429eb93 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429eb93 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429eb93 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429eb93 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429eb93 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429eb93 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429eb93 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429eb93 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:30: runtime error: reference binding to misaligned address 0x5310002841c4 for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429eb47 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da429eb47 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da429eb47 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da429eb47 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #4 0x7f8da429eb47 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #5 0x7f8da429eb47 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #6 0x7f8da429eb47 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #7 0x7f8da429eb47 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #8 0x7f8da429eb47 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #9 0x7f8da429eb47 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #10 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #11 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:109: runtime error: member access within misaligned address 0x5310002841c4 for type 'struct MapBase', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429eafb in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da429eafb in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da429eafb in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da429eafb in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #4 0x7f8da429eafb in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #5 0x7f8da429eafb in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #6 0x7f8da429eafb in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #7 0x7f8da429eafb in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #8 0x7f8da429eafb in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #9 0x7f8da429eafb in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #10 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #11 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173:12: runtime error: reference binding to misaligned address 0x5310002841c4 for type 'struct __as_base ', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429eaaf in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173 #1 0x7f8da429eaaf in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429eaaf in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429eaaf in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429eaaf in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429eaaf in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429eaaf in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429eaaf in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429eaaf in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429eaaf in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429eaaf in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:15: runtime error: member access within misaligned address 0x5310002841c4 for type 'struct MapBase', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429ea63 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429ea63 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429ea63 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429ea63 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429ea63 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429ea63 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429ea63 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429ea63 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429ea63 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429ea63 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429ea63 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: member access within misaligned address 0x5310002841c4 for type 'struct MapBase', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 a4 3e 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e9c2 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429e9c2 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e9c2 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e9c2 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e9c2 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e9c2 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e9c2 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e9c2 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e9c2 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e9c2 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e9c2 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: constructor call on misaligned address 0x5310002841cc for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x5310002841cc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e93f in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429e93f in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e93f in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e93f in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e93f in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e93f in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e93f in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e93f in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e93f in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e93f in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e93f in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146:102: runtime error: member access within misaligned address 0x5310002841cc for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x5310002841cc: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e8f3 in Eigen::internal::variable_if_dynamic::variable_if_dynamic(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146 #1 0x7f8da429e8f3 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #2 0x7f8da429e8f3 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #3 0x7f8da429e8f3 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #4 0x7f8da429e8f3 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #5 0x7f8da429e8f3 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #6 0x7f8da429e8f3 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #7 0x7f8da429e8f3 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #8 0x7f8da429e8f3 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #9 0x7f8da429e8f3 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #10 0x7f8da429e8f3 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #11 0x7f8da429e8f3 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #12 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #13 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:46: runtime error: member access within misaligned address 0x5310002841c4 for type 'struct MapBase', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 a4 3e 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e8a6 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da429e8a6 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429e8a6 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429e8a6 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429e8a6 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429e8a6 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429e8a6 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429e8a6 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429e8a6 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429e8a6 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429e8a6 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179:27: runtime error: member call on misaligned address 0x5310002841c4 for type 'struct MapBase', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 a4 3e 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429de99 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179 #1 0x7f8da429de99 in Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>::MapBase(double*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da429de99 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da429de99 in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da429de99 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #5 0x7f8da429de99 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #6 0x7f8da429de99 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #7 0x7f8da429de99 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #8 0x7f8da429de99 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #9 0x7f8da429de99 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #10 0x7f8da429de99 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #11 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #12 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #13 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #14 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:58: runtime error: member access within misaligned address 0x5310002841c4 for type 'struct Map', which requires 8 byte alignment 0x5310002841c4: note: pointer points here 00 00 00 00 a4 3e 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e0ae in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(double*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da429e0ae in stan::math::arena_matrix, void>::arena_matrix(stan::math::arena_matrix, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da429e0ae in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #3 0x7f8da429e0ae in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #4 0x7f8da429e0ae in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #5 0x7f8da429e0ae in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #6 0x7f8da429e0ae in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #7 0x7f8da429e0ae in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #8 0x7f8da429e0ae in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #9 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #10 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90: runtime error: member access within misaligned address 0x5310002841ac for type 'struct ._anon_2029', which requires 8 byte alignment 0x5310002841ac: note: pointer points here 8d 7f 00 00 94 40 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 a4 3e 28 00 ^ #0 0x7f8da429df73 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::build({lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:90 #1 0x7f8da429df73 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:15 #2 0x7f8da429df73 in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #3 0x7f8da429df73 in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #4 0x7f8da429df73 in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #5 0x7f8da429df73 in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #6 0x7f8da429df73 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #7 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #8 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16: runtime error: member access within misaligned address 0x5310002841a4 for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002841a4: note: pointer points here 00 00 00 00 88 6a 6c a8 8d 7f 00 00 94 40 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429e0de in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::reverse_pass_callback_vari(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:16 #1 0x7f8da429e0de in void stan::math::reverse_pass_callback, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:39 #2 0x7f8da429e0de in auto stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:89 #3 0x7f8da429e0de in auto stan::math::internal::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&, 0ul>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&, std::integer_sequence) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:22 #4 0x7f8da429e0de in auto stan::math::for_each, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}, std::tuple, -1, 1, 0, -1, 1>, void> >&>(stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}&&, std::tuple, -1, 1, 0, -1, 1>, void> >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/for_each.hpp:67 #5 0x7f8da429e0de in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:87 #6 0x7f8da4374aa8 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::std_normal_lpdf, -1, 1, 0, -1, 1>, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/std_normal_lpdf.hpp:64 #7 0x7f8da3f24953 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2653 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da43cad47 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da43cad47 in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da43cad47 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da43cad47 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #4 0x7f8da43cad47 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #5 0x7f8da43cad47 in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #6 0x7f8da43cad47 in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #7 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #8 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #9 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: reference binding to misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da43cac42 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da43cac42 in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da43cac42 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da43cac42 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #4 0x7f8da43cac42 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #5 0x7f8da43cac42 in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #6 0x7f8da43cac42 in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #7 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #8 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #9 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da43cc211 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da43cc211 in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da43cc211 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da43cc211 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #4 0x7f8da43cc211 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #5 0x7f8da43cc211 in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #6 0x7f8da43cc211 in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #7 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #8 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #9 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:71: runtime error: load of misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da43cc18b in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #1 0x7f8da43cc18b in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da43cc18b in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #3 0x7f8da43cc18b in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #4 0x7f8da43cc18b in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #5 0x7f8da43cc18b in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #6 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #7 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #8 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da43cbb3b in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da43cbb3b in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da43cbb3b in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da43cbb3b in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #4 0x7f8da43cbb3b in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #5 0x7f8da43cbb3b in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #6 0x7f8da43cbb3b in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #7 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #8 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #9 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: reference binding to misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da43cba56 in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da43cba56 in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da43cba56 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da43cba56 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #4 0x7f8da43cba56 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #5 0x7f8da43cba56 in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #6 0x7f8da43cba56 in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #7 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #8 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #9 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da43cb96a in auto& stan::math::value_of(stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/value_of.hpp:25 #1 0x7f8da43cb96a in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #2 0x7f8da43cb96a in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #3 0x7f8da43cb96a in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #4 0x7f8da43cb96a in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #5 0x7f8da43cb96a in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #6 0x7f8da43cb96a in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #7 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #8 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #9 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:71: runtime error: load of misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da43cb8f4 in auto stan::math::value_of, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}::operator() >(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75 #1 0x7f8da43cb8f4 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da43cb8f4 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:145 #3 0x7f8da43cb8f4 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, 0>::operator()(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182 #4 0x7f8da43cb8f4 in stan::scalar_type, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>::type stan::get, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, void>(Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/get.hpp:48 #5 0x7f8da43cb8f4 in stan::math::internal::bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double, true>::check(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:49 #6 0x7f8da4432a36 in void stan::math::check_bounded, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const>, double, double>(char const*, char const*, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1> const&, (void*)0, (void*)0>(Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda(auto:1&)#1}::operator(), -1, 1, 0, -1, 1> const>(Eigen::Matrix, -1, 1, 0, -1, 1> const&) const::{lambda(auto:1 const&)#1}, Eigen::Matrix, -1, 1, 0, -1, 1> const> const&, double const&, double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_bounded.hpp:80 #7 0x7f8da4432a36 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:56 #8 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member call on misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da44349d5 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da44349d5 in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #2 0x7f8da44349d5 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:77 #3 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da4434975 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da4434975 in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #2 0x7f8da4434975 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:77 #3 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x531000282bc4 for type 'const struct vari_value', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da44348dd in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da44348dd in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da44348dd in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #3 0x7f8da44348dd in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:77 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: reference binding to misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da443487a in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da443487a in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da443487a in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #3 0x7f8da443487a in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:77 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x531000282bc4 for type 'const struct vari_value', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da443484a in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da443484a in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da443484a in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #3 0x7f8da443484a in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:77 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:77:27: runtime error: load of misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da443481a in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:77 #1 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member call on misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da423898e in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da423898e in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #2 0x7f8da443394c in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:93 #3 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da4238966 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da4238966 in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #2 0x7f8da443394c in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:93 #3 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x531000282bc4 for type 'const struct vari_value', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da4238922 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da4238922 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da4238922 in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #3 0x7f8da443394c in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:93 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: reference binding to misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da42388eb in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da42388eb in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da42388eb in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #3 0x7f8da443394c in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:93 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x531000282bc4 for type 'const struct vari_value', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da42388cf in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da42388cf in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da42388cf in decltype(auto) stan::scalar_seq_view, -1, 1, 0, -1, 1> const&, void>::val, -1, 1, 0, -1, 1> const&, (void*)0>(unsigned long) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/scalar_seq_view.hpp:46 #3 0x7f8da443394c in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:93 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/log.hpp:51:55: runtime error: load of misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da3fb0357 in auto stan::math::log(double const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/log.hpp:51 #1 0x7f8da4433954 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:93 #2 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #3 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #4 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:120:33: runtime error: load of misaligned address 0x531000282bcc for type 'const double', which requires 8 byte alignment 0x531000282bcc: note: pointer points here 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 ^ #0 0x7f8da4434b60 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:120 #1 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x53100028438c for type 'Scalar', which requires 8 byte alignment 0x53100028438c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da44359a7 in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da44359a7 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #2 0x7f8da44359a7 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #3 0x7f8da44359a7 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:127 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394:68: runtime error: reference binding to misaligned address 0x53100028438c for type 'Scalar', which requires 8 byte alignment 0x53100028438c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4435985 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #1 0x7f8da4435985 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #2 0x7f8da4435985 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:127 #3 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:128:17: runtime error: load of misaligned address 0x53100028438c for type 'Scalar', which requires 8 byte alignment 0x53100028438c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da443596a in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:128 #1 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002843ec for type 'Scalar', which requires 8 byte alignment 0x5310002843ec: note: pointer points here 00 01 99 41 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4435d92 in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4435d92 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #2 0x7f8da4435d92 in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #3 0x7f8da4435d92 in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:123 #4 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394:68: runtime error: reference binding to misaligned address 0x5310002843ec for type 'Scalar', which requires 8 byte alignment 0x5310002843ec: note: pointer points here 00 01 99 41 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4435d7e in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:394 #1 0x7f8da4435d7e in Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>::operator[](long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:411 #2 0x7f8da4435d7e in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:123 #3 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #4 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #5 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:123:42: runtime error: load of misaligned address 0x5310002843ec for type 'Scalar', which requires 8 byte alignment 0x5310002843ec: note: pointer points here 00 01 99 41 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4435d6a in stan::return_type, -1, 1, 0, -1, 1> >::type stan::math::binomial_lpmf >, std::vector >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0>(std::vector > const&, std::vector > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/binomial_lpmf.hpp:123 #1 0x7f8da3f24c19 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2672 #2 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #3 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002848dc for type 'struct Scalar', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c5ad6 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Array, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da46c5ad6 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da46c5ad6 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da46c5ad6 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da46c6725 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da46c6725 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da46c6725 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:41 #9 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da46c6725 in stan::internal::arena_type_impl, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::type, void, void>::type stan::math::to_arena, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:68 #12 0x7f8da46c6725 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:30 #13 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #14 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x5310002848dc for type 'struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c5a7c in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da46c5a7c in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da46c5a7c in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da46c6725 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da46c6725 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #7 0x7f8da46c6725 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:41 #8 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #9 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #10 0x7f8da46c6725 in stan::internal::arena_type_impl, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::type, void, void>::type stan::math::to_arena, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:68 #11 0x7f8da46c6725 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:30 #12 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #13 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:100: runtime error: store to misaligned address 0x5310002848dc for type 'struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c5a22 in Eigen::internal::assign_op, stan::math::var_value >::assignCoeff(stan::math::var_value&, stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da46c5a22 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da46c5a22 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da46c5a22 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da46c6725 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da46c6725 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da46c6725 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:41 #9 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da46c6725 in stan::internal::arena_type_impl, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::type, void, void>::type stan::math::to_arena, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:68 #12 0x7f8da46c6725 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:30 #13 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #14 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002848e4 for type 'struct Scalar', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c47e1 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Array, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da46c47e1 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da46c47e1 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da46c47e1 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da46c6725 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da46c6725 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da46c6725 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:41 #9 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da46c6725 in stan::internal::arena_type_impl, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::type, void, void>::type stan::math::to_arena, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:68 #12 0x7f8da46c6725 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:30 #13 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #14 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x5310002848e4 for type 'struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c476b in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da46c476b in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da46c476b in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da46c6725 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da46c6725 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #7 0x7f8da46c6725 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:41 #8 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #9 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #10 0x7f8da46c6725 in stan::internal::arena_type_impl, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::type, void, void>::type stan::math::to_arena, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:68 #11 0x7f8da46c6725 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:30 #12 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #13 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #14 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #15 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #16 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #17 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #18 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #19 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #20 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #21 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #22 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #23 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #24 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #25 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #26 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #33 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #34 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #35 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #36 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #57 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #58 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #59 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #74 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #75 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #76 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #84 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #85 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #86 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #87 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #88 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #90 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #91 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #92 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #93 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #94 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #95 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #96 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #97 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24:100: runtime error: store to misaligned address 0x5310002848e4 for type 'struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c46f5 in Eigen::internal::assign_op, stan::math::var_value >::assignCoeff(stan::math::var_value&, stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:24 #1 0x7f8da46c46f5 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da46c46f5 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::evaluator, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, stan::math::var_value >, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da46c46f5 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da46c6725 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value >, Eigen::internal::Dense2Dense, void>::run(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da46c6725 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::assign_op, stan::math::var_value > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&, Eigen::internal::assign_op, stan::math::var_value > const&, Eigen::internal::enable_if, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, Eigen::internal::evaluator_traits, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da46c6725 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836 #8 0x7f8da46c6725 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >& Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::DenseBase, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Assign.h:41 #9 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>& stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::operator=, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123 #10 0x7f8da46c6725 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68 #11 0x7f8da46c6725 in stan::internal::arena_type_impl, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > >::type, void, void>::type stan::math::to_arena, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> >, (void*)0, (void*)0>(Eigen::Map, -1, 1, 0, -1, 1> const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:68 #12 0x7f8da46c6725 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:30 #13 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #14 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #15 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #16 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911:18: runtime error: reference binding to misaligned address 0x5310002848dc for type 'const struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 b4 3a 28 00 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 ^ #0 0x7f8da46c86f6 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Array, -1, 1, 0, -1, 1> >::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911 #1 0x7f8da46c86f6 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c86f6 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c86f6 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #4 0x7f8da46c86f6 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c86f6 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c86f6 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c86f6 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:22: runtime error: reference binding to misaligned address 0x5310002848dc for type 'const struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 b4 3a 28 00 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 ^ #0 0x7f8da46c8742 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da46c8742 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #2 0x7f8da46c8742 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #3 0x7f8da46c8742 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #4 0x7f8da46c8742 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #5 0x7f8da46c8742 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #6 0x7f8da46c8742 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002848dc for type 'const struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 b4 3a 28 00 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 ^ #0 0x7f8da46c878e in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c878e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c878e in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c878e in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #4 0x7f8da46c878e in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c878e in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c878e in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c878e in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000283ab4 for type 'struct vari_type', which requires 8 byte alignment 0x531000283ab4: note: pointer points here 8a 19 2a 3f 60 4c 6c a8 8d 7f 00 00 a2 39 b8 2a 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 ^ #0 0x7f8da46c87e2 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c87e2 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c87e2 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c87e2 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #4 0x7f8da46c87e2 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c87e2 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c87e2 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c87e2 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: reference binding to misaligned address 0x531000283abc for type 'const double', which requires 8 byte alignment 0x531000283abc: note: pointer points here 8d 7f 00 00 a2 39 b8 2a 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 ^ #0 0x7f8da46c887d in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c887d in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c887d in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c887d in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #4 0x7f8da46c887d in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c887d in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c887d in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c887d in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002848dc for type 'const struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 b4 3a 28 00 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 ^ #0 0x7f8da46c88c9 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c88c9 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c88c9 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c88c9 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #4 0x7f8da46c88c9 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c88c9 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c88c9 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c88c9 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000283ab4 for type 'struct vari_type', which requires 8 byte alignment 0x531000283ab4: note: pointer points here 8a 19 2a 3f 60 4c 6c a8 8d 7f 00 00 a2 39 b8 2a 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 ^ #0 0x7f8da46c8915 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c8915 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c8915 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c8915 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #4 0x7f8da46c8915 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c8915 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c8915 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c8915 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:50: runtime error: reference binding to misaligned address 0x531000283abc for type 'const double', which requires 8 byte alignment 0x531000283abc: note: pointer points here 8d 7f 00 00 a2 39 b8 2a 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 ^ #0 0x7f8da46c8961 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da46c8961 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #2 0x7f8da46c8961 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #3 0x7f8da46c8961 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #4 0x7f8da46c8961 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #5 0x7f8da46c8961 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #6 0x7f8da46c8961 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381:78: runtime error: reference binding to misaligned address 0x531000283abc for type 'const double', which requires 8 byte alignment 0x531000283abc: note: pointer points here 8d 7f 00 00 a2 39 b8 2a 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 ^ #0 0x7f8da46c89ad in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #1 0x7f8da46c89ad in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #2 0x7f8da46c89ad in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #3 0x7f8da46c89ad in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #4 0x7f8da46c89ad in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #5 0x7f8da46c89ad in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #6 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #7 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202:9: runtime error: load of misaligned address 0x531000283abc for type 'const double', which requires 8 byte alignment 0x531000283abc: note: pointer points here 8d 7f 00 00 a2 39 b8 2a 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 ^ #0 0x7f8da46c89f9 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:202 #1 0x7f8da46c89f9 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #2 0x7f8da46c89f9 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #3 0x7f8da46c89f9 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #4 0x7f8da46c89f9 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #6 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911:18: runtime error: reference binding to misaligned address 0x5310002848e4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 10 53 00 00 14 3d 28 00 ^ #0 0x7f8da46c713a in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Array, -1, 1, 0, -1, 1> >::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911 #1 0x7f8da46c713a in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c713a in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c713a in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #4 0x7f8da46c713a in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c713a in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c713a in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c713a in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:22: runtime error: reference binding to misaligned address 0x5310002848e4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 10 53 00 00 14 3d 28 00 ^ #0 0x7f8da46c71b2 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da46c71b2 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #2 0x7f8da46c71b2 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #3 0x7f8da46c71b2 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #4 0x7f8da46c71b2 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #5 0x7f8da46c71b2 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #6 0x7f8da46c71b2 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002848e4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 10 53 00 00 14 3d 28 00 ^ #0 0x7f8da46c722a in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c722a in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c722a in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c722a in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #4 0x7f8da46c722a in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c722a in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c722a in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c722a in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000283bdc for type 'struct vari_type', which requires 8 byte alignment 0x531000283bdc: note: pointer points here e7 40 f3 3e 60 4c 6c a8 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 ^ #0 0x7f8da46c72aa in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c72aa in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c72aa in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c72aa in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #4 0x7f8da46c72aa in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c72aa in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c72aa in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c72aa in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: reference binding to misaligned address 0x531000283be4 for type 'const double', which requires 8 byte alignment 0x531000283be4: note: pointer points here 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 ^ #0 0x7f8da46c73af in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c73af in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c73af in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c73af in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #4 0x7f8da46c73af in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c73af in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c73af in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c73af in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x5310002848e4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 10 53 00 00 14 3d 28 00 ^ #0 0x7f8da46c7435 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c7435 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c7435 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c7435 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #4 0x7f8da46c7435 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c7435 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c7435 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c7435 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000283bdc for type 'struct vari_type', which requires 8 byte alignment 0x531000283bdc: note: pointer points here e7 40 f3 3e 60 4c 6c a8 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 ^ #0 0x7f8da46c74bb in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da46c74bb in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da46c74bb in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #3 0x7f8da46c74bb in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #4 0x7f8da46c74bb in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #5 0x7f8da46c74bb in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #6 0x7f8da46c74bb in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #7 0x7f8da46c74bb in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:50: runtime error: reference binding to misaligned address 0x531000283be4 for type 'const double', which requires 8 byte alignment 0x531000283be4: note: pointer points here 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 ^ #0 0x7f8da46c7541 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da46c7541 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #2 0x7f8da46c7541 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #3 0x7f8da46c7541 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #4 0x7f8da46c7541 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #5 0x7f8da46c7541 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #6 0x7f8da46c7541 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381:78: runtime error: reference binding to misaligned address 0x531000283be4 for type 'const double', which requires 8 byte alignment 0x531000283be4: note: pointer points here 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 ^ #0 0x7f8da46c75c7 in Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::coeffByOuterInner(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:381 #1 0x7f8da46c75c7 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #2 0x7f8da46c75c7 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #3 0x7f8da46c75c7 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #4 0x7f8da46c75c7 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #5 0x7f8da46c75c7 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #6 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #7 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204:17: runtime error: reference binding to misaligned address 0x531000283be4 for type 'const double', which requires 8 byte alignment 0x531000283be4: note: pointer points here 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 ^ #0 0x7f8da46c764d in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #1 0x7f8da46c764d in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #2 0x7f8da46c764d in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #3 0x7f8da46c764d in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #4 0x7f8da46c764d in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #6 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:42:122: runtime error: load of misaligned address 0x531000283be4 for type 'const double', which requires 8 byte alignment 0x531000283be4: note: pointer points here 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 ^ #0 0x7f8da46c76d3 in Eigen::internal::scalar_sum_op::operator()(double const&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:42 #1 0x7f8da46c76d3 in double Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0, 0>::run, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::internal::redux_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:204 #2 0x7f8da46c76d3 in double Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::redux >(Eigen::internal::scalar_sum_op const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:418 #3 0x7f8da46c76d3 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:463 #4 0x7f8da46c76d3 in Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::sum() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Redux.h:459 #5 0x7f8da46c76d3 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #6 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #7 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43: runtime error: constructor call on misaligned address 0x531000284924 for type 'struct callback_vari', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c7f73 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #1 0x7f8da46c7f73 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #2 0x7f8da46c7f73 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #3 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #4 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #5 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #6 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:17: runtime error: member access within misaligned address 0x531000284924 for type 'struct callback_vari', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c7fa3 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:17 #1 0x7f8da46c7fa3 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da46c7fa3 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da46c7fa3 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #4 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #5 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000284924 for type 'struct callback_vari', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c7fdb in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da46c7fdb in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da46c7fdb in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da46c7fdb in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #4 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #5 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: constructor call on misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c800b in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da46c800b in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da46c800b in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da46c800b in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #4 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #5 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: member access within misaligned address 0x531000284924 for type 'struct callback_vari', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8065 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da46c8065 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da46c8065 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da46c8065 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #4 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #5 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19: runtime error: constructor call on misaligned address 0x53100028493c for type 'struct ._anon_2041', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c80d0 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #1 0x7f8da46c80d0 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #2 0x7f8da46c80d0 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #3 0x7f8da46c80d0 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #4 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #5 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #6 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #7 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31: runtime error: member access within misaligned address 0x53100028493c for type 'struct ._anon_2041', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8100 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #1 0x7f8da46c8100 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #2 0x7f8da46c8100 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #3 0x7f8da46c8100 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #4 0x7f8da46c8100 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #6 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #7 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #8 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83: runtime error: reference binding to misaligned address 0x53100028493c for type 'struct __as_base ', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8130 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:83 #1 0x7f8da46c8130 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #2 0x7f8da46c8130 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #3 0x7f8da46c8130 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #4 0x7f8da46c8130 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #5 0x7f8da46c8130 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #6 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #7 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85: runtime error: member access within misaligned address 0x53100028493c for type 'struct arena_matrix', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8160 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #1 0x7f8da46c8160 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #2 0x7f8da46c8160 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #3 0x7f8da46c8160 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #4 0x7f8da46c8160 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #5 0x7f8da46c8160 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #6 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #7 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #8 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #9 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #10 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #11 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #12 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #13 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #14 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #15 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #16 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #17 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #18 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #19 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #20 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #21 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #23 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #27 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #28 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #29 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #30 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #45 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #51 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #52 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #53 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #61 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #69 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #70 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #78 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #79 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #80 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #87 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #88 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #89 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #90 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #91 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #92 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156:12: runtime error: reference binding to misaligned address 0x53100028493c for type 'struct __as_base ', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c81a7 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:156 #1 0x7f8da46c81a7 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da46c81a7 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #3 0x7f8da46c81a7 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #4 0x7f8da46c81a7 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #5 0x7f8da46c81a7 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #6 0x7f8da46c81a7 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:73: runtime error: member access within misaligned address 0x53100028493c for type 'struct Map', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c81e5 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da46c81e5 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da46c81e5 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #3 0x7f8da46c81e5 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #4 0x7f8da46c81e5 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #5 0x7f8da46c81e5 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #6 0x7f8da46c81e5 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:34: runtime error: member call on misaligned address 0x53100028493c for type 'struct Map', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8223 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da46c8223 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da46c8223 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #3 0x7f8da46c8223 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #4 0x7f8da46c8223 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #5 0x7f8da46c8223 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #6 0x7f8da46c8223 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:30: runtime error: reference binding to misaligned address 0x53100028493c for type 'struct __as_base ', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8261 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da46c8261 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da46c8261 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da46c8261 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #4 0x7f8da46c8261 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #5 0x7f8da46c8261 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #6 0x7f8da46c8261 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #7 0x7f8da46c8261 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289:109: runtime error: member access within misaligned address 0x53100028493c for type 'struct MapBase', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c829f in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #1 0x7f8da46c829f in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #2 0x7f8da46c829f in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #3 0x7f8da46c829f in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #4 0x7f8da46c829f in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #5 0x7f8da46c829f in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #6 0x7f8da46c829f in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #7 0x7f8da46c829f in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #8 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #9 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #10 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #11 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173:12: runtime error: reference binding to misaligned address 0x53100028493c for type 'struct __as_base ', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c82dd in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:173 #1 0x7f8da46c82dd in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da46c82dd in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da46c82dd in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da46c82dd in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da46c82dd in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #6 0x7f8da46c82dd in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #7 0x7f8da46c82dd in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #8 0x7f8da46c82dd in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #9 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #10 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:15: runtime error: member access within misaligned address 0x53100028493c for type 'struct MapBase', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8361 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da46c8361 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da46c8361 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da46c8361 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da46c8361 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da46c8361 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #6 0x7f8da46c8361 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #7 0x7f8da46c8361 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #8 0x7f8da46c8361 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #9 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #10 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: member access within misaligned address 0x53100028493c for type 'struct MapBase', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 dc 48 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c83a7 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da46c83a7 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da46c83a7 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da46c83a7 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da46c83a7 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da46c83a7 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #6 0x7f8da46c83a7 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #7 0x7f8da46c83a7 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #8 0x7f8da46c83a7 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #9 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #10 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:32: runtime error: constructor call on misaligned address 0x531000284944 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000284944: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8423 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da46c8423 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da46c8423 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da46c8423 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da46c8423 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da46c8423 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #6 0x7f8da46c8423 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #7 0x7f8da46c8423 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #8 0x7f8da46c8423 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #9 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #10 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146:102: runtime error: member access within misaligned address 0x531000284944 for type 'struct variable_if_dynamic', which requires 8 byte alignment 0x531000284944: note: pointer points here 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8461 in Eigen::internal::variable_if_dynamic::variable_if_dynamic(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:146 #1 0x7f8da46c8461 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #2 0x7f8da46c8461 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #3 0x7f8da46c8461 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #4 0x7f8da46c8461 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #5 0x7f8da46c8461 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #6 0x7f8da46c8461 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #7 0x7f8da46c8461 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #8 0x7f8da46c8461 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #9 0x7f8da46c8461 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #10 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #11 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #12 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #13 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174:46: runtime error: member access within misaligned address 0x53100028493c for type 'struct MapBase', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c84a7 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:174 #1 0x7f8da46c84a7 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da46c84a7 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da46c84a7 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da46c84a7 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da46c84a7 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #6 0x7f8da46c84a7 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #7 0x7f8da46c84a7 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #8 0x7f8da46c84a7 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #9 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #10 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179:27: runtime error: member call on misaligned address 0x53100028493c for type 'struct MapBase', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c8560 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:179 #1 0x7f8da46c8560 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>::MapBase(stan::math::var_value*, long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:289 #2 0x7f8da46c8560 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #3 0x7f8da46c8560 in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #4 0x7f8da46c8560 in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #5 0x7f8da46c8560 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #6 0x7f8da46c8560 in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #7 0x7f8da46c8560 in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #8 0x7f8da46c8560 in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #9 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #10 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #11 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #12 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157:58: runtime error: member access within misaligned address 0x53100028493c for type 'struct Map', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 00 00 dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da46c859e in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(stan::math::var_value*, long, long, Eigen::Stride<0, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:157 #1 0x7f8da46c859e in stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>::arena_matrix(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void> const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:85 #2 0x7f8da46c859e in stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::vector({lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #3 0x7f8da46c859e in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::callback_vari(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:19 #4 0x7f8da46c859e in stan::math::internal::callback_vari::type, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>* stan::math::make_callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:43 #5 0x7f8da46c859e in stan::math::var_value::type, void> stan::math::make_callback_var > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>(double&&, stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}&&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:63 #6 0x7f8da46c859e in stan::math::var_value stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:31 #7 0x7f8da3f24ed1 in stan::math::accumulator, void>::sum() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135 #8 0x7f8da3f24ed1 in stan::scalar_type, std::allocator > >, void>::type model_binomial_1par_namespace::model_binomial_1par::log_prob_impl, std::allocator > >, std::vector >, (void*)0, (void*)0>(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:2679 #9 0x7f8da3f3a834 in stan::math::var_value model_binomial_1par_namespace::model_binomial_1par::log_prob >(std::vector, std::allocator > >&, std::vector >&, std::ostream*) const /data/gannet/ripley/R/packages/tests-gcc-SAN/multinma/src/stanExports_binomial_1par.h:4144 #10 0x7f8da3f3a834 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40 #11 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #12 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #13 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #14 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #15 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #16 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #17 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #18 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #19 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #20 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #21 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #28 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #29 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #30 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #31 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #34 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #36 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #46 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #52 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #53 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #54 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #70 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #71 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #72 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #79 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #80 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #81 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #88 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #89 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #90 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #91 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #92 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #93 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #94 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member call on misaligned address 0x531000284924 for type 'struct vari_type', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3fb6aaf in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da3f3a85f in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:42 #2 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #3 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #4 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #5 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #6 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #7 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #8 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #9 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #10 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #11 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #12 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #13 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #14 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #15 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #16 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #17 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #18 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #19 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #20 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #21 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #22 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #43 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #44 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #45 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #53 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #61 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #62 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #70 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #71 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #72 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #79 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #80 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #81 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #82 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #83 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #84 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #85 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #86 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_type', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3fb6a87 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da3f3a85f in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:42 #2 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #3 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #4 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #5 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #6 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #7 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #8 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #9 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #10 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #11 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #12 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #13 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #14 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #15 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #16 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #17 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #18 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #19 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #20 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #21 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #22 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #43 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #44 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #45 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #53 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #58 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #59 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #60 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #61 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #62 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #70 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #71 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #72 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #73 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #74 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #75 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #76 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #77 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #78 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #79 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #80 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #81 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #82 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #83 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #84 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #85 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #86 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x531000284924 for type 'const struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3fb6a43 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3fb6a43 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da3f3a85f in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:42 #3 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #4 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #5 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #6 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #7 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #8 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #9 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #10 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #11 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #12 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #13 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #14 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #15 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #16 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #17 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #18 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #20 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #21 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #22 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #23 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #40 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #41 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #44 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #45 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #46 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #54 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #62 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #63 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #71 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #72 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #73 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #80 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #81 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #82 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #83 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #84 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #85 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #86 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: reference binding to misaligned address 0x53100028492c for type 'const double', which requires 8 byte alignment 0x53100028492c: note: pointer points here 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 10 53 00 00 09 00 00 00 ^ #0 0x7f8da3fb6a12 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3fb6a12 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da3f3a85f in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:42 #3 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #4 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #5 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #6 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #7 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #8 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #9 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #10 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #11 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #12 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #13 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #14 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #15 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #16 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #17 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #18 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #20 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #21 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #22 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #23 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #40 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #41 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #44 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #45 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #46 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #54 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #62 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #63 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #71 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #72 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #73 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #80 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #81 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #82 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #83 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #84 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #85 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #86 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x531000284924 for type 'const struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3fb69f9 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3fb69f9 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #2 0x7f8da3f3a85f in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:42 #3 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #4 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #5 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #6 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #7 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #8 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #9 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #10 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #11 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #12 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #13 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #14 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #15 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #16 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #17 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #18 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #20 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #21 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #22 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #23 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #40 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #41 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #44 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #45 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #46 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #54 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #62 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #63 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #71 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #72 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #73 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #80 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #81 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #82 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #83 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #84 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #85 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #86 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:42: runtime error: load of misaligned address 0x53100028492c for type 'const double', which requires 8 byte alignment 0x53100028492c: note: pointer points here 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 10 53 00 00 09 00 00 00 ^ #0 0x7f8da3f3b89f in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:42 #1 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #2 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #3 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #4 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #5 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #6 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #7 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #8 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #9 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #10 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #11 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #12 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #13 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #14 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #15 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #16 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #17 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #18 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #19 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #20 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #21 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #23 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #24 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #25 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #26 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #38 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #39 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #42 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #43 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #44 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #51 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #52 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #60 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #61 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #62 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #69 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #70 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #71 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #79 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #80 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #81 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #82 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #83 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #84 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #85 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:52: runtime error: member call on misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3ddb8df in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:52 #1 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #2 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #3 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #4 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #5 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #6 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #7 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #8 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #9 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #10 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #11 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #12 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #13 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #14 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #15 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #16 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #17 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #18 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #20 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #21 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #22 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #23 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #40 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #41 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #44 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #45 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #46 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #54 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #62 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #63 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #71 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #72 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #73 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #80 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #81 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #82 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #83 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #84 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #85 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #86 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:52: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3ddb971 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:52 #1 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #2 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #3 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #4 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #5 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #6 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #7 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #8 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #9 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #10 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #11 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #12 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #13 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #14 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #15 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #16 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #17 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #18 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #20 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #21 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #22 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #23 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #40 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #41 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #44 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #45 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #46 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #47 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #48 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #50 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #51 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #52 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #53 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #54 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #59 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #61 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #62 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #63 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #71 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #72 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #73 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #80 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #81 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #82 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #83 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #84 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #85 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #86 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:169: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3ddb925 in stan::math::vari_value::init_dependent() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:169 #1 0x7f8da3ddb925 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:52 #2 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #3 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:169: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 00 00 dc 48 28 00 ^ #0 0x7f8da3ddb508 in stan::math::vari_value::init_dependent() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:169 #1 0x7f8da3ddb508 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:52 #2 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #3 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_base', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3ddb42d in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #1 0x7f8da3ddb42d in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #2 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #3 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_base', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3ddb3cc in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #1 0x7f8da3ddb3cc in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #2 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #3 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #4 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #5 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #6 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #7 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #8 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #9 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #10 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #11 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #13 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #14 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #15 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #17 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #19 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #21 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #22 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #23 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #24 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #41 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #42 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #45 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #46 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #47 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #48 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #49 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #54 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #63 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #64 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #72 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #73 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #74 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #81 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #82 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #83 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #84 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #85 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #86 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #87 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: member access within misaligned address 0x531000284924 for type 'struct callback_vari', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3f73f9f in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: member call on misaligned address 0x53100028493c for type 'struct ._anon_2041', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f73f58 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: reference binding to misaligned address 0x531000284924 for type 'struct callback_vari', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3f741c6 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32: runtime error: member access within misaligned address 0x531000284924 for type 'struct callback_vari', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3f741a4 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #1 0x7f8da3f741a4 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32: runtime error: member call on misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3f74182 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #1 0x7f8da3f74182 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3f74160 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #1 0x7f8da3f74160 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: member access within misaligned address 0x531000284924 for type 'struct vari_value', which requires 8 byte alignment 0x531000284924: note: pointer points here 10 53 00 00 c8 6a 6c a8 8d 7f 00 00 35 e4 32 b5 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 ^ #0 0x7f8da3f74114 in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da3f74114 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #2 0x7f8da3f74114 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: reference binding to misaligned address 0x531000284934 for type 'double', which requires 8 byte alignment 0x531000284934: note: pointer points here 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f740cd in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da3f740cd in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #2 0x7f8da3f740cd in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32: runtime error: reference binding to misaligned address 0x531000284934 for type 'const Scalar', which requires 8 byte alignment 0x531000284934: note: pointer points here 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f740ab in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #1 0x7f8da3f740ab in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32: runtime error: member access within misaligned address 0x53100028493c for type 'struct ._anon_2041', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f74089 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #1 0x7f8da3f74089 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x53100028493c for type 'struct Map', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f74067 in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da3f74067 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da3f74067 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #3 0x7f8da3f74067 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x53100028493c for type 'const struct Map', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f74029 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da3f74029 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da3f74029 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #3 0x7f8da3f74029 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x53100028493c for type 'const struct Map', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f74007 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da3f74007 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da3f74007 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da3f74007 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #4 0x7f8da3f74007 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x53100028493c for type 'const struct Map', which requires 8 byte alignment 0x53100028493c: note: pointer points here 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f73fe5 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da3f73fe5 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da3f73fe5 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da3f73fe5 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #4 0x7f8da3f73fe5 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67: runtime error: reference binding to misaligned address 0x531000284934 for type 'const Scalar', which requires 8 byte alignment 0x531000284934: note: pointer points here 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f742cf in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #1 0x7f8da3f742cf in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #2 0x7f8da3f742cf in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:191:64: runtime error: reference binding to misaligned address 0x531000284934 for type 'const double', which requires 8 byte alignment 0x531000284934: note: pointer points here 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f74297 in Eigen::DenseBase >::Constant(long, long, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:191 #1 0x7f8da3f74297 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #2 0x7f8da3f74297 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #3 0x7f8da3f74297 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/NullaryFunctors.h:20:83: runtime error: load of misaligned address 0x531000284934 for type 'const double', which requires 8 byte alignment 0x531000284934: note: pointer points here 9c 69 e3 c0 00 00 00 00 00 00 f0 3f dc 48 28 00 10 53 00 00 09 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3f74259 in Eigen::internal::scalar_constant_op::scalar_constant_op(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/NullaryFunctors.h:20 #1 0x7f8da3f74259 in Eigen::DenseBase >::Constant(long, long, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:191 #2 0x7f8da3f74259 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #3 0x7f8da3f74259 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #4 0x7f8da3f74259 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002848dc for type 'struct Scalar', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 b4 3a 28 00 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 ^ #0 0x7f8da3f745cc in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Array, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da3f745cc in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f745cc in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f745cc in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f745cc in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f745cc in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f745cc in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f745cc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f745cc in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f745cc in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f745cc in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:22: runtime error: reference binding to misaligned address 0x5310002848dc for type 'struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 b4 3a 28 00 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 ^ #0 0x7f8da3f74562 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da3f74562 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da3f74562 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da3f74562 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da3f74562 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da3f74562 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da3f74562 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da3f74562 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #8 0x7f8da3f74562 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #9 0x7f8da3f74562 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x5310002848dc for type 'struct var_value', which requires 8 byte alignment 0x5310002848dc: note: pointer points here 00 00 00 00 b4 3a 28 00 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 ^ #0 0x7f8da3f744f8 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da3f744f8 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f744f8 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f744f8 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f744f8 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f744f8 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f744f8 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f744f8 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f744f8 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f744f8 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f744f8 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x531000283ab4 for type 'struct vari_type', which requires 8 byte alignment 0x531000283ab4: note: pointer points here 8a 19 2a 3f 60 4c 6c a8 8d 7f 00 00 a2 39 b8 2a 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 ^ #0 0x7f8da3f74486 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da3f74486 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f74486 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f74486 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f74486 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f74486 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f74486 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f74486 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f74486 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f74486 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f74486 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x531000283ac4 for type 'double', which requires 8 byte alignment 0x531000283ac4: note: pointer points here 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 10 53 00 00 18 00 00 00 ^ #0 0x7f8da3f74b13 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da3f74b13 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f74b13 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f74b13 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f74b13 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f74b13 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f74b13 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f74b13 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f74b13 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f74b13 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f74b13 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:50: runtime error: reference binding to misaligned address 0x531000283ac4 for type 'Scalar', which requires 8 byte alignment 0x531000283ac4: note: pointer points here 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 10 53 00 00 18 00 00 00 ^ #0 0x7f8da3f74aa9 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da3f74aa9 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da3f74aa9 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da3f74aa9 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da3f74aa9 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da3f74aa9 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da3f74aa9 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da3f74aa9 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #8 0x7f8da3f74aa9 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #9 0x7f8da3f74aa9 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x531000283ac4 for type 'double', which requires 8 byte alignment 0x531000283ac4: note: pointer points here 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 10 53 00 00 18 00 00 00 ^ #0 0x7f8da3f74a3f in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da3f74a3f in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da3f74a3f in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da3f74a3f in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da3f74a3f in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da3f74a3f in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da3f74a3f in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #7 0x7f8da3f74a3f in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #8 0x7f8da3f74a3f in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49:102: runtime error: load of misaligned address 0x531000283ac4 for type 'double', which requires 8 byte alignment 0x531000283ac4: note: pointer points here 24 b5 60 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 34 39 28 00 10 53 00 00 18 00 00 00 ^ #0 0x7f8da3f74ee4 in Eigen::internal::add_assign_op::assignCoeff(double&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49 #1 0x7f8da3f74ee4 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da3f74ee4 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da3f74ee4 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da3f74ee4 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da3f74ee4 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da3f74ee4 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da3f74ee4 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #8 0x7f8da3f74ee4 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #9 0x7f8da3f74ee4 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002848e4 for type 'struct Scalar', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 10 53 00 00 14 3d 28 00 ^ #0 0x7f8da3f73ec4 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Array, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da3f73ec4 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f73ec4 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f73ec4 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f73ec4 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f73ec4 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f73ec4 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f73ec4 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f73ec4 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f73ec4 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f73ec4 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:22: runtime error: reference binding to misaligned address 0x5310002848e4 for type 'struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 10 53 00 00 14 3d 28 00 ^ #0 0x7f8da3f73e4c in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da3f73e4c in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da3f73e4c in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da3f73e4c in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da3f73e4c in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da3f73e4c in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da3f73e4c in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da3f73e4c in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #8 0x7f8da3f73e4c in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #9 0x7f8da3f73e4c in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x5310002848e4 for type 'struct var_value', which requires 8 byte alignment 0x5310002848e4: note: pointer points here 10 53 00 00 dc 3b 28 00 10 53 00 00 8c 3c 28 00 10 53 00 00 bc 3c 28 00 10 53 00 00 14 3d 28 00 ^ #0 0x7f8da3f73dd4 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da3f73dd4 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f73dd4 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f73dd4 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f73dd4 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f73dd4 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f73dd4 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f73dd4 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f73dd4 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f73dd4 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f73dd4 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x531000283bdc for type 'struct vari_type', which requires 8 byte alignment 0x531000283bdc: note: pointer points here e7 40 f3 3e 60 4c 6c a8 8d 7f 00 00 68 b8 8b 59 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 ^ #0 0x7f8da3f73d54 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da3f73d54 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f73d54 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f73d54 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f73d54 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f73d54 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f73d54 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f73d54 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f73d54 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f73d54 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f73d54 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x531000283bec for type 'double', which requires 8 byte alignment 0x531000283bec: note: pointer points here 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 10 53 00 00 03 00 00 00 ^ #0 0x7f8da3f73c4f in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da3f73c4f in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da3f73c4f in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da3f73c4f in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da3f73c4f in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da3f73c4f in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da3f73c4f in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da3f73c4f in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da3f73c4f in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #9 0x7f8da3f73c4f in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #10 0x7f8da3f73c4f in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:50: runtime error: reference binding to misaligned address 0x531000283bec for type 'Scalar', which requires 8 byte alignment 0x531000283bec: note: pointer points here 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 10 53 00 00 03 00 00 00 ^ #0 0x7f8da3f73bc9 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da3f73bc9 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da3f73bc9 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da3f73bc9 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da3f73bc9 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da3f73bc9 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da3f73bc9 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da3f73bc9 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #8 0x7f8da3f73bc9 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #9 0x7f8da3f73bc9 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x531000283bec for type 'double', which requires 8 byte alignment 0x531000283bec: note: pointer points here 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 10 53 00 00 03 00 00 00 ^ #0 0x7f8da3f73b43 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da3f73b43 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da3f73b43 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da3f73b43 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da3f73b43 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da3f73b43 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da3f73b43 in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #7 0x7f8da3f73b43 in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #8 0x7f8da3f73b43 in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49:102: runtime error: load of misaligned address 0x531000283bec for type 'double', which requires 8 byte alignment 0x531000283bec: note: pointer points here 18 a3 01 bf 00 00 00 00 00 00 00 00 60 6b 6c a8 8d 7f 00 00 ac 3b 28 00 10 53 00 00 03 00 00 00 ^ #0 0x7f8da3f73abd in Eigen::internal::add_assign_op::assignCoeff(double&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49 #1 0x7f8da3f73abd in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da3f73abd in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator, Eigen::Array > >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da3f73abd in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da3f73abd in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da3f73abd in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da3f73abd in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::CwiseNullaryOp, Eigen::Array > const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::Array >, Eigen::internal::evaluator_traits, Eigen::Array > >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da3f73abd in Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27 #8 0x7f8da3f73abd in auto stan::math::sum > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/sum.hpp:32 #9 0x7f8da3f73abd in stan::math::internal::callback_vari > >(std::vector, stan::math::arena_allocator > > const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member access within misaligned address 0x531000284854 for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000284854: note: pointer points here 00 00 f0 3f 88 6a 6c a8 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4321d42 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member call on misaligned address 0x53100028485c for type 'struct ._anon_2029', which requires 8 byte alignment 0x53100028485c: note: pointer points here 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 8c 43 28 00 ^ #0 0x7f8da4321d75 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91: runtime error: member access within misaligned address 0x53100028485c for type 'struct ._anon_2029', which requires 8 byte alignment 0x53100028485c: note: pointer points here 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 8c 43 28 00 ^ #0 0x7f8da4321d64 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91 #1 0x7f8da4321d64 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1> >::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:49:44: runtime error: reference binding to misaligned address 0x531000284874 for type 'const struct Map', which requires 8 byte alignment 0x531000284874: note: pointer points here 00 00 00 00 8c 43 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 3c 48 28 00 ^ #0 0x7f8da432029d in Eigen::EigenBase, 0, Eigen::Stride<0, 0> > >::derived() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:49 #1 0x7f8da432029d in Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::array() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MatrixBase.h:322 #2 0x7f8da432029d in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000284874 for type 'const struct Map', which requires 8 byte alignment 0x531000284874: note: pointer points here 00 00 00 00 8c 43 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 3c 48 28 00 ^ #0 0x7f8da43204d6 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da43204d6 in Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const>::ArrayWrapper(Eigen::Map, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:61 #2 0x7f8da43204d6 in Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::array() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MatrixBase.h:322 #3 0x7f8da43204d6 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000284874 for type 'const struct Map', which requires 8 byte alignment 0x531000284874: note: pointer points here 00 00 00 00 8c 43 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 3c 48 28 00 ^ #0 0x7f8da43204b4 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da43204b4 in Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const>::ArrayWrapper(Eigen::Map, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:61 #2 0x7f8da43204b4 in Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::array() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MatrixBase.h:322 #3 0x7f8da43204b4 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67: runtime error: member call on misaligned address 0x53100028488c for type 'const struct var', which requires 8 byte alignment 0x53100028488c: note: pointer points here 00 00 00 00 3c 48 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4320461 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x53100028488c for type 'const struct var_value', which requires 8 byte alignment 0x53100028488c: note: pointer points here 00 00 00 00 3c 48 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da432044d in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da432044d in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member call on misaligned address 0x53100028483c for type 'struct vari_type', which requires 8 byte alignment 0x53100028483c: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ea 6a 05 55 11 67 e3 c0 00 00 00 00 00 00 f0 3f 88 6a 6c a8 ^ #0 0x7f8da432042a in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da432042a in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x53100028488c for type 'const struct var_value', which requires 8 byte alignment 0x53100028488c: note: pointer points here 00 00 00 00 3c 48 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4320408 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da4320408 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x53100028483c for type 'struct vari_type', which requires 8 byte alignment 0x53100028483c: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ea 6a 05 55 11 67 e3 c0 00 00 00 00 00 00 f0 3f 88 6a 6c a8 ^ #0 0x7f8da43203e6 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da43203e6 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x53100028488c for type 'const struct var_value', which requires 8 byte alignment 0x53100028488c: note: pointer points here 00 00 00 00 3c 48 28 00 10 53 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da432039a in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da432039a in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: member access within misaligned address 0x53100028483c for type 'struct vari_value', which requires 8 byte alignment 0x53100028483c: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ea 6a 05 55 11 67 e3 c0 00 00 00 00 00 00 f0 3f 88 6a 6c a8 ^ #0 0x7f8da4320378 in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da4320378 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #2 0x7f8da4320378 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: reference binding to misaligned address 0x53100028484c for type 'double', which requires 8 byte alignment 0x53100028484c: note: pointer points here 11 67 e3 c0 00 00 00 00 00 00 f0 3f 88 6a 6c a8 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 ^ #0 0x7f8da4320331 in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da4320331 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #2 0x7f8da4320331 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67: runtime error: reference binding to misaligned address 0x53100028484c for type 'const double', which requires 8 byte alignment 0x53100028484c: note: pointer points here 11 67 e3 c0 00 00 00 00 00 00 f0 3f 88 6a 6c a8 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 ^ #0 0x7f8da43206eb in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/NullaryFunctors.h:20:83: runtime error: load of misaligned address 0x53100028484c for type 'const double', which requires 8 byte alignment 0x53100028484c: note: pointer points here 11 67 e3 c0 00 00 00 00 00 00 f0 3f 88 6a 6c a8 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 ^ #0 0x7f8da43206c9 in Eigen::internal::scalar_constant_op::scalar_constant_op(double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/NullaryFunctors.h:20 #1 0x7f8da43206c9 in Eigen::CwiseBinaryOp > >::value>::type, double>, Eigen::internal::plain_constant_type, 0, Eigen::Stride<0, 0> > const>, Eigen::internal::promote_scalar_arg > >::value>::type>::type const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const Eigen::operator*(double const&, Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseBinaryOps.h:50 #2 0x7f8da43206c9 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x53100028485c for type 'struct Map', which requires 8 byte alignment 0x53100028485c: note: pointer points here 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 8c 43 28 00 ^ #0 0x7f8da4320677 in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da4320677 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da4320677 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x53100028485c for type 'const struct Map', which requires 8 byte alignment 0x53100028485c: note: pointer points here 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 8c 43 28 00 ^ #0 0x7f8da432061d in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da432061d in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da432061d in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x53100028485c for type 'const struct Map', which requires 8 byte alignment 0x53100028485c: note: pointer points here 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 8c 43 28 00 ^ #0 0x7f8da43205ed in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da43205ed in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da43205ed in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da43205ed in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x53100028485c for type 'const struct Map', which requires 8 byte alignment 0x53100028485c: note: pointer points here 8d 7f 00 00 ac 46 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 8c 43 28 00 ^ #0 0x7f8da43205bd in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da43205bd in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da43205bd in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da43205bd in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x53100028438c for type 'const double', which requires 8 byte alignment 0x53100028438c: note: pointer points here 00 00 00 00 3e 01 2d d8 a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e ^ #0 0x7f8da4320f03 in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da4320f03 in Eigen::internal::evaluator_wrapper_base, 0, Eigen::Stride<0, 0> > const> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #2 0x7f8da4320f03 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #3 0x7f8da4320f03 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4320f03 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4320f03 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4320f03 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4320f03 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4320f03 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da4320f03 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da4320f03 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404:33: runtime error: reference binding to misaligned address 0x53100028438c for type 'const double', which requires 8 byte alignment 0x53100028438c: note: pointer points here 00 00 00 00 3e 01 2d d8 a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e ^ #0 0x7f8da4320ea9 in Eigen::internal::evaluator_wrapper_base, 0, Eigen::Stride<0, 0> > const> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #1 0x7f8da4320ea9 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #2 0x7f8da4320ea9 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4320ea9 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4320ea9 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4320ea9 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4320ea9 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4320ea9 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da4320ea9 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da4320ea9 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775:22: runtime error: reference binding to misaligned address 0x53100028438c for type 'const double', which requires 8 byte alignment 0x53100028438c: note: pointer points here 00 00 00 00 3e 01 2d d8 a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e ^ #0 0x7f8da43215a4 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #1 0x7f8da43215a4 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da43215a4 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da43215a4 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da43215a4 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da43215a4 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da43215a4 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da43215a4 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #8 0x7f8da43215a4 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:80:122: runtime error: load of misaligned address 0x53100028438c for type 'const double', which requires 8 byte alignment 0x53100028438c: note: pointer points here 00 00 00 00 3e 01 2d d8 a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e ^ #0 0x7f8da43210b4 in Eigen::internal::scalar_product_op::operator()(double const&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:80 #1 0x7f8da43210b4 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #2 0x7f8da43210b4 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da43210b4 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da43210b4 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da43210b4 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da43210b4 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da43210b4 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da43210b4 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da43210b4 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002846ac for type 'struct Scalar', which requires 8 byte alignment 0x5310002846ac: note: pointer points here 00 00 00 00 c4 2b 28 00 10 53 00 00 0c 2c 28 00 10 53 00 00 54 2c 28 00 10 53 00 00 9c 2c 28 00 ^ #0 0x7f8da4320731 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4320731 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4320731 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da4320731 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4320731 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4320731 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4320731 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4320731 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4320731 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da4320731 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da4320731 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:22: runtime error: reference binding to misaligned address 0x5310002846ac for type 'struct var_value', which requires 8 byte alignment 0x5310002846ac: note: pointer points here 00 00 00 00 c4 2b 28 00 10 53 00 00 0c 2c 28 00 10 53 00 00 54 2c 28 00 10 53 00 00 9c 2c 28 00 ^ #0 0x7f8da432188d in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da432188d in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #2 0x7f8da432188d in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da432188d in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da432188d in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da432188d in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da432188d in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da432188d in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da432188d in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da432188d in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x5310002846ac for type 'struct var_value', which requires 8 byte alignment 0x5310002846ac: note: pointer points here 00 00 00 00 c4 2b 28 00 10 53 00 00 0c 2c 28 00 10 53 00 00 54 2c 28 00 10 53 00 00 9c 2c 28 00 ^ #0 0x7f8da4321823 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4321823 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4321823 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da4321823 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4321823 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4321823 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4321823 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4321823 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4321823 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da4321823 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da4321823 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x531000282bc4 for type 'struct vari_type', which requires 8 byte alignment 0x531000282bc4: note: pointer points here 00 00 00 00 b8 67 6c a8 8d 7f 00 00 bd c5 08 37 c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 ^ #0 0x7f8da43217b1 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da43217b1 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da43217b1 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da43217b1 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da43217b1 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da43217b1 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da43217b1 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da43217b1 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da43217b1 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da43217b1 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da43217b1 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x531000282bd4 for type 'double', which requires 8 byte alignment 0x531000282bd4: note: pointer points here c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 98 98 80 b2 ^ #0 0x7f8da43216da in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da43216da in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da43216da in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da43216da in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da43216da in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da43216da in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da43216da in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da43216da in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da43216da in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da43216da in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da43216da in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:50: runtime error: reference binding to misaligned address 0x531000282bd4 for type 'Scalar', which requires 8 byte alignment 0x531000282bd4: note: pointer points here c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 98 98 80 b2 ^ #0 0x7f8da4321670 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da4321670 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #2 0x7f8da4321670 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4321670 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4321670 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4321670 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4321670 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4321670 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da4321670 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da4321670 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416:36: runtime error: reference binding to misaligned address 0x531000282bd4 for type 'Scalar', which requires 8 byte alignment 0x531000282bd4: note: pointer points here c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 98 98 80 b2 ^ #0 0x7f8da4321606 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #1 0x7f8da4321606 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4321606 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4321606 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4321606 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4321606 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4321606 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da4321606 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #8 0x7f8da4321606 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x531000282bd4 for type 'double', which requires 8 byte alignment 0x531000282bd4: note: pointer points here c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 98 98 80 b2 ^ #0 0x7f8da43219f9 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da43219f9 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da43219f9 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da43219f9 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da43219f9 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da43219f9 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da43219f9 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #7 0x7f8da43219f9 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #8 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #9 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #10 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #11 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49:102: runtime error: load of misaligned address 0x531000282bd4 for type 'double', which requires 8 byte alignment 0x531000282bd4: note: pointer points here c6 35 eb 3f 00 00 00 00 00 00 00 00 bc 26 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 98 98 80 b2 ^ #0 0x7f8da43218f7 in Eigen::internal::add_assign_op::assignCoeff(double&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49 #1 0x7f8da43218f7 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da43218f7 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da43218f7 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da43218f7 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da43218f7 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da43218f7 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da43218f7 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #8 0x7f8da43218f7 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x531000284394 for type 'const double', which requires 8 byte alignment 0x531000284394: note: pointer points here a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e 81 17 36 c0 ab d7 67 68 ^ #0 0x7f8da431f17a in Eigen::internal::mapbase_evaluator, 0, Eigen::Stride<0, 0> >, Eigen::Matrix >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da431f17a in Eigen::internal::evaluator_wrapper_base, 0, Eigen::Stride<0, 0> > const> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #2 0x7f8da431f17a in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #3 0x7f8da431f17a in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da431f17a in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da431f17a in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da431f17a in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da431f17a in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da431f17a in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da431f17a in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da431f17a in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404:33: runtime error: reference binding to misaligned address 0x531000284394 for type 'const double', which requires 8 byte alignment 0x531000284394: note: pointer points here a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e 81 17 36 c0 ab d7 67 68 ^ #0 0x7f8da431f112 in Eigen::internal::evaluator_wrapper_base, 0, Eigen::Stride<0, 0> > const> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1404 #1 0x7f8da431f112 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #2 0x7f8da431f112 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da431f112 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da431f112 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da431f112 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da431f112 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da431f112 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da431f112 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da431f112 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775:22: runtime error: reference binding to misaligned address 0x531000284394 for type 'const double', which requires 8 byte alignment 0x531000284394: note: pointer points here a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e 81 17 36 c0 ab d7 67 68 ^ #0 0x7f8da431fbc6 in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #1 0x7f8da431fbc6 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da431fbc6 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da431fbc6 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da431fbc6 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da431fbc6 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da431fbc6 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da431fbc6 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #8 0x7f8da431fbc6 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:80:122: runtime error: load of misaligned address 0x531000284394 for type 'const double', which requires 8 byte alignment 0x531000284394: note: pointer points here a8 04 8b c0 eb 00 a0 26 09 fb 2c c1 dd 0f e3 d3 a7 98 e1 c0 3a ad f8 6e 81 17 36 c0 ab d7 67 68 ^ #0 0x7f8da431f6cf in Eigen::internal::scalar_product_op::operator()(double const&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/BinaryFunctors.h:80 #1 0x7f8da431f6cf in Eigen::internal::binary_evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:775 #2 0x7f8da431f6cf in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da431f6cf in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da431f6cf in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da431f6cf in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da431f6cf in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da431f6cf in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da431f6cf in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da431f6cf in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002846b4 for type 'struct Scalar', which requires 8 byte alignment 0x5310002846b4: note: pointer points here 10 53 00 00 0c 2c 28 00 10 53 00 00 54 2c 28 00 10 53 00 00 9c 2c 28 00 10 53 00 00 e4 2c 28 00 ^ #0 0x7f8da4320234 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4320234 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4320234 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da4320234 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4320234 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4320234 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4320234 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4320234 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4320234 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da4320234 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da4320234 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:22: runtime error: reference binding to misaligned address 0x5310002846b4 for type 'struct var_value', which requires 8 byte alignment 0x5310002846b4: note: pointer points here 10 53 00 00 0c 2c 28 00 10 53 00 00 54 2c 28 00 10 53 00 00 9c 2c 28 00 10 53 00 00 e4 2c 28 00 ^ #0 0x7f8da43201bc in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da43201bc in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #2 0x7f8da43201bc in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da43201bc in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da43201bc in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da43201bc in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da43201bc in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da43201bc in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da43201bc in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da43201bc in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x5310002846b4 for type 'struct var_value', which requires 8 byte alignment 0x5310002846b4: note: pointer points here 10 53 00 00 0c 2c 28 00 10 53 00 00 54 2c 28 00 10 53 00 00 9c 2c 28 00 10 53 00 00 e4 2c 28 00 ^ #0 0x7f8da4320144 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4320144 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4320144 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da4320144 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da4320144 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da4320144 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da4320144 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da4320144 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4320144 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da4320144 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da4320144 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x531000282c0c for type 'struct vari_type', which requires 8 byte alignment 0x531000282c0c: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 50 2c 68 a0 fd fe ef 3f 00 00 00 00 00 00 00 00 e4 2b 28 00 ^ #0 0x7f8da43200c4 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da43200c4 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da43200c4 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da43200c4 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da43200c4 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da43200c4 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da43200c4 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da43200c4 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da43200c4 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da43200c4 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da43200c4 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x531000282c1c for type 'double', which requires 8 byte alignment 0x531000282c1c: note: pointer points here fd fe ef 3f 00 00 00 00 00 00 00 00 e4 2b 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 9e 6a 12 86 ^ #0 0x7f8da431ffd1 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da431ffd1 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da431ffd1 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #3 0x7f8da431ffd1 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #4 0x7f8da431ffd1 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #5 0x7f8da431ffd1 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #6 0x7f8da431ffd1 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #7 0x7f8da431ffd1 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da431ffd1 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #9 0x7f8da431ffd1 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #10 0x7f8da431ffd1 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:50: runtime error: reference binding to misaligned address 0x531000282c1c for type 'Scalar', which requires 8 byte alignment 0x531000282c1c: note: pointer points here fd fe ef 3f 00 00 00 00 00 00 00 00 e4 2b 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 9e 6a 12 86 ^ #0 0x7f8da431ff59 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da431ff59 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #2 0x7f8da431ff59 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da431ff59 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da431ff59 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da431ff59 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da431ff59 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da431ff59 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #8 0x7f8da431ff59 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #9 0x7f8da431ff59 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416:36: runtime error: reference binding to misaligned address 0x531000282c1c for type 'Scalar', which requires 8 byte alignment 0x531000282c1c: note: pointer points here fd fe ef 3f 00 00 00 00 00 00 00 00 e4 2b 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 9e 6a 12 86 ^ #0 0x7f8da431fee1 in Eigen::internal::evaluator_wrapper_base, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416 #1 0x7f8da431fee1 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da431fee1 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da431fee1 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da431fee1 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da431fee1 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da431fee1 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da431fee1 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #8 0x7f8da431fee1 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:26: runtime error: reference binding to misaligned address 0x531000282c1c for type 'double', which requires 8 byte alignment 0x531000282c1c: note: pointer points here fd fe ef 3f 00 00 00 00 00 00 00 00 e4 2b 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 9e 6a 12 86 ^ #0 0x7f8da431fe69 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #1 0x7f8da431fe69 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #2 0x7f8da431fe69 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #3 0x7f8da431fe69 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #4 0x7f8da431fe69 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #5 0x7f8da431fe69 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #6 0x7f8da431fe69 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #7 0x7f8da431fe69 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #8 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #9 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #10 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #11 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #12 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #13 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #14 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #15 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #16 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #17 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #18 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #19 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #20 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #21 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #22 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #25 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #26 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #27 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #29 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #30 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #31 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #32 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #33 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #34 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #35 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #36 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #37 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #47 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #48 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #53 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #54 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #55 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #62 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #63 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #71 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #72 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #73 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #74 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #75 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #76 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #77 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #78 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #79 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #80 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #81 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #82 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #83 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #84 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #85 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #86 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #87 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #88 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #89 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #90 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #91 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #92 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #93 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #94 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #95 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49:102: runtime error: load of misaligned address 0x531000282c1c for type 'double', which requires 8 byte alignment 0x531000282c1c: note: pointer points here fd fe ef 3f 00 00 00 00 00 00 00 00 e4 2b 28 00 10 53 00 00 10 4d 6c a8 8d 7f 00 00 9e 6a 12 86 ^ #0 0x7f8da431fdf1 in Eigen::internal::add_assign_op::assignCoeff(double&, double const&) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/AssignmentFunctors.h:49 #1 0x7f8da431fdf1 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da431fdf1 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::internal::evaluator, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da431fdf1 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da431fdf1 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da431fdf1 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da431fdf1 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::add_assign_op >(Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >&, Eigen::CwiseBinaryOp, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const>, Eigen::internal::evaluator_traits, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858 #7 0x7f8da431fdf1 in Eigen::ArrayWrapper, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >& Eigen::ArrayBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::operator+=, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> >(Eigen::ArrayBase, Eigen::CwiseNullaryOp, Eigen::Array const> const, Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > const> const> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ArrayBase.h:194 #8 0x7f8da431fdf1 in void stan::math::internal::update_adjoints, -1, 1, 0, -1, 1>, void>, stan::math::arena_matrix, void>, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, stan::math::arena_matrix, void> const&, stan::math::var_value const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member access within misaligned address 0x531000283d8c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283d8c: note: pointer points here 10 53 00 00 80 6b 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 14 3d 28 00 ^ #0 0x7f8da3f44914 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member call on misaligned address 0x531000283d94 for type 'struct ._anon_2070', which requires 8 byte alignment 0x531000283d94: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 14 3d 28 00 10 53 00 00 00 00 00 00 ^ #0 0x7f8da3f4494b in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91: runtime error: member access within misaligned address 0x531000283d94 for type 'struct ._anon_2070', which requires 8 byte alignment 0x531000283d94: note: pointer points here 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 14 3d 28 00 10 53 00 00 00 00 00 00 ^ #0 0x7f8da3f4493a in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91 #1 0x7f8da3f4493a in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator()&>(stan::math::internal::ops_partials_edge&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member access within misaligned address 0x531000283d2c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000283d2c: note: pointer points here 00 00 f0 3f 60 6b 6c a8 8d 7f 00 00 04 3d 28 00 10 53 00 00 01 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4321b32 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member call on misaligned address 0x531000283d34 for type 'struct ._anon_2069', which requires 8 byte alignment 0x531000283d34: note: pointer points here 8d 7f 00 00 04 3d 28 00 10 53 00 00 01 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0c 3d 28 00 ^ #0 0x7f8da4321b65 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91: runtime error: member access within misaligned address 0x531000283d34 for type 'struct ._anon_2069', which requires 8 byte alignment 0x531000283d34: note: pointer points here 8d 7f 00 00 04 3d 28 00 10 53 00 00 01 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0c 3d 28 00 ^ #0 0x7f8da4321b54 in stan::math::internal::partials_propagator, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91 #1 0x7f8da4321b54 in stan::math::internal::reverse_pass_callback_vari, void, Eigen::Matrix, -1, 1, 0, -1, 1>, double, double>::build(double)::{lambda(auto:1&&)#1}::operator(), -1, 1, 0, -1, 1>, void>&>(stan::math::internal::ops_partials_edge, -1, 1, 0, -1, 1>, void>&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: member access within misaligned address 0x5310002836bc for type 'struct callback_vari', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f778bd in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: member call on misaligned address 0x5310002836d4 for type 'struct ._anon_1966', which requires 8 byte alignment 0x5310002836d4: note: pointer points here 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 ^ #0 0x7f8da3f77d0a in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: reference binding to misaligned address 0x5310002836bc for type 'struct callback_vari', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77cf6 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28: runtime error: member access within misaligned address 0x5310002836bc for type 'struct callback_vari', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77ce2 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #1 0x7f8da3f77ce2 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28: runtime error: member call on misaligned address 0x5310002836bc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77cce in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #1 0x7f8da3f77cce in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28: runtime error: member access within misaligned address 0x5310002836bc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77cba in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #1 0x7f8da3f77cba in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: member access within misaligned address 0x5310002836bc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77c8a in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da3f77c8a in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #2 0x7f8da3f77c8a in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: reference binding to misaligned address 0x5310002836cc for type 'double', which requires 8 byte alignment 0x5310002836cc: note: pointer points here ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 ^ #0 0x7f8da3f77c5f in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da3f77c5f in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #2 0x7f8da3f77c5f in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29: runtime error: load of misaligned address 0x5310002836cc for type 'double', which requires 8 byte alignment 0x5310002836cc: note: pointer points here ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 ^ #0 0x7f8da3f77c4b in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #1 0x7f8da3f77c4b in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29: runtime error: member access within misaligned address 0x5310002836bc for type 'struct callback_vari', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77c2a in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #1 0x7f8da3f77c2a in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29: runtime error: member call on misaligned address 0x5310002836bc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77c0c in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #1 0x7f8da3f77c0c in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29: runtime error: member access within misaligned address 0x5310002836bc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77bee in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #1 0x7f8da3f77bee in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x5310002836bc for type 'const struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77bd0 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3f77bd0 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #2 0x7f8da3f77bd0 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: reference binding to misaligned address 0x5310002836c4 for type 'const double', which requires 8 byte alignment 0x5310002836c4: note: pointer points here 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 ^ #0 0x7f8da3f77bb2 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3f77bb2 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #2 0x7f8da3f77bb2 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x5310002836bc for type 'const struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77b94 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3f77b94 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #2 0x7f8da3f77b94 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29: runtime error: load of misaligned address 0x5310002836c4 for type 'const double', which requires 8 byte alignment 0x5310002836c4: note: pointer points here 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 ^ #0 0x7f8da3f77b76 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:29 #1 0x7f8da3f77b76 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30: runtime error: member access within misaligned address 0x5310002836bc for type 'struct callback_vari', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77b4b in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30 #1 0x7f8da3f77b4b in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30: runtime error: member call on misaligned address 0x5310002836bc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77b23 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30 #1 0x7f8da3f77b23 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30: runtime error: member access within misaligned address 0x5310002836bc for type 'struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77afb in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30 #1 0x7f8da3f77afb in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x5310002836bc for type 'const struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77ad3 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3f77ad3 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30 #2 0x7f8da3f77ad3 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: reference binding to misaligned address 0x5310002836c4 for type 'const double', which requires 8 byte alignment 0x5310002836c4: note: pointer points here 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 ^ #0 0x7f8da3f77aab in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3f77aab in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30 #2 0x7f8da3f77aab in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139: runtime error: member access within misaligned address 0x5310002836bc for type 'const struct vari_value', which requires 8 byte alignment 0x5310002836bc: note: pointer points here 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 ^ #0 0x7f8da3f77a83 in stan::math::vari_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:139 #1 0x7f8da3f77a83 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30 #2 0x7f8da3f77a83 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30: runtime error: load of misaligned address 0x5310002836c4 for type 'const double', which requires 8 byte alignment 0x5310002836c4: note: pointer points here 8d 7f 00 00 03 ba 87 2d ee fa ef 3f 82 12 29 04 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 ^ #0 0x7f8da3f77a5b in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:30 #1 0x7f8da3f77a5b in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28: runtime error: member access within misaligned address 0x5310002836d4 for type 'struct ._anon_1966', which requires 8 byte alignment 0x5310002836d4: note: pointer points here 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 ^ #0 0x7f8da3f77a38 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #1 0x7f8da3f77a38 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28: runtime error: member call on misaligned address 0x5310002836d4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002836d4: note: pointer points here 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 ^ #0 0x7f8da3f77a1a in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #1 0x7f8da3f77a1a in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x5310002836d4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002836d4: note: pointer points here 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 ^ #0 0x7f8da3f779fc in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da3f779fc in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #2 0x7f8da3f779fc in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member call on misaligned address 0x531000283694 for type 'struct vari_type', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 00 00 00 00 00 00 00 00 54 2b 28 00 ^ #0 0x7f8da3f779d6 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da3f779d6 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #2 0x7f8da3f779d6 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x5310002836d4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002836d4: note: pointer points here 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 ^ #0 0x7f8da3f779b8 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da3f779b8 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #2 0x7f8da3f779b8 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x531000283694 for type 'struct vari_type', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 00 00 00 00 00 00 00 00 54 2b 28 00 ^ #0 0x7f8da3f7799a in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da3f7799a in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #2 0x7f8da3f7799a in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105: runtime error: member access within misaligned address 0x5310002836d4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002836d4: note: pointer points here 57 25 e2 c0 94 36 28 00 10 53 00 00 60 4c 6c a8 8d 7f 00 00 00 00 00 00 00 00 f8 7f 00 00 00 00 ^ #0 0x7f8da3f77956 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #1 0x7f8da3f77956 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #2 0x7f8da3f77956 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: member access within misaligned address 0x531000283694 for type 'struct vari_value', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 00 00 00 00 00 00 00 00 54 2b 28 00 ^ #0 0x7f8da3f77938 in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da3f77938 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #2 0x7f8da3f77938 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #3 0x7f8da3f77938 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159: runtime error: reference binding to misaligned address 0x5310002836a4 for type 'double', which requires 8 byte alignment 0x5310002836a4: note: pointer points here 51 8c 1d 40 00 00 00 00 00 00 00 00 54 2b 28 00 10 53 00 00 94 21 28 00 10 53 00 00 b8 67 6c a8 ^ #0 0x7f8da3f778f9 in stan::math::vari_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/vari.hpp:159 #1 0x7f8da3f778f9 in stan::math::var_value::adj() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:105 #2 0x7f8da3f778f9 in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #3 0x7f8da3f778f9 in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28: runtime error: load of misaligned address 0x5310002836a4 for type 'double', which requires 8 byte alignment 0x5310002836a4: note: pointer points here 51 8c 1d 40 00 00 00 00 00 00 00 00 54 2b 28 00 10 53 00 00 94 21 28 00 10 53 00 00 b8 67 6c a8 ^ #0 0x7f8da3f778de in auto stan::math::inv_logit(stan::math::var_value const&)::{lambda(auto:1&)#1}::operator() >(stan::math::internal::callback_vari&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_logit.hpp:28 #1 0x7f8da3f778de in stan::math::internal::callback_vari(stan::math::var_value const&)::{lambda(auto:1&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: member access within misaligned address 0x531000283694 for type 'struct callback_vari', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d6b5 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: member call on misaligned address 0x5310002836ac for type 'struct ._anon_1281', which requires 8 byte alignment 0x5310002836ac: note: pointer points here e1 fb 36 c0 54 2b 28 00 10 53 00 00 94 21 28 00 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ^ #0 0x7f8da3f4d975 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21: runtime error: reference binding to misaligned address 0x531000283694 for type 'const struct callback_vari', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d961 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x5310002836ac for type 'struct ._anon_1281', which requires 8 byte alignment 0x5310002836ac: note: pointer points here e1 fb 36 c0 54 2b 28 00 10 53 00 00 94 21 28 00 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ^ #0 0x7f8da3f4d94d in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d94d in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x531000282b54 for type 'struct vari_value', which requires 8 byte alignment 0x531000282b54: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 e8 e5 da b2 14 22 f3 bf 00 00 00 00 00 00 00 00 58 67 6c a8 ^ #0 0x7f8da3f4d931 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d931 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x531000282b54 for type 'struct vari_value', which requires 8 byte alignment 0x531000282b54: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 e8 e5 da b2 14 22 f3 bf 00 00 00 00 00 00 00 00 58 67 6c a8 ^ #0 0x7f8da3f4d901 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d901 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x531000283694 for type 'const struct callback_vari', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d8c9 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d8c9 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x531000283694 for type 'const struct callback_vari', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d885 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d885 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x531000283694 for type 'const struct vari_value', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d867 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d867 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x531000282b54 for type 'struct vari_value', which requires 8 byte alignment 0x531000282b54: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 e8 e5 da b2 14 22 f3 bf 00 00 00 00 00 00 00 00 58 67 6c a8 ^ #0 0x7f8da3f4d81b in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d81b in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56: runtime error: member access within misaligned address 0x531000282b54 for type 'struct vari_value', which requires 8 byte alignment 0x531000282b54: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 e8 e5 da b2 14 22 f3 bf 00 00 00 00 00 00 00 00 58 67 6c a8 ^ #0 0x7f8da3f4d7f8 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:56 #1 0x7f8da3f4d7f8 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x5310002836ac for type 'struct ._anon_1281', which requires 8 byte alignment 0x5310002836ac: note: pointer points here e1 fb 36 c0 54 2b 28 00 10 53 00 00 94 21 28 00 10 53 00 00 b8 67 6c a8 8d 7f 00 00 03 ba 87 2d ^ #0 0x7f8da3f4d7df in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d7df in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x531000282194 for type 'struct vari_value', which requires 8 byte alignment 0x531000282194: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 06 41 af 3c 6b 2a 21 40 00 00 00 00 00 00 00 00 f8 66 6c a8 ^ #0 0x7f8da3f4d7b2 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d7b2 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x531000282194 for type 'struct vari_value', which requires 8 byte alignment 0x531000282194: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 06 41 af 3c 6b 2a 21 40 00 00 00 00 00 00 00 00 f8 66 6c a8 ^ #0 0x7f8da3f4d782 in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d782 in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x531000283694 for type 'const struct callback_vari', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d74a in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d74a in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x531000283694 for type 'const struct callback_vari', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d72c in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d72c in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x531000283694 for type 'const struct vari_value', which requires 8 byte alignment 0x531000283694: note: pointer points here 10 53 00 00 10 4d 6c a8 8d 7f 00 00 92 c8 a7 4c 51 8c 1d 40 22 47 fe 84 e1 fb 36 c0 54 2b 28 00 ^ #0 0x7f8da3f4d70e in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d70e in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x531000282194 for type 'struct vari_value', which requires 8 byte alignment 0x531000282194: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 06 41 af 3c 6b 2a 21 40 00 00 00 00 00 00 00 00 f8 66 6c a8 ^ #0 0x7f8da3f4d6ee in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d6ee in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57: runtime error: member access within misaligned address 0x531000282194 for type 'struct vari_value', which requires 8 byte alignment 0x531000282194: note: pointer points here 00 00 00 00 60 4c 6c a8 8d 7f 00 00 06 41 af 3c 6b 2a 21 40 00 00 00 00 00 00 00 00 f8 66 6c a8 ^ #0 0x7f8da3f4d6ce in auto stan::math::operator+(stan::math::var_value const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}::operator() >(stan::math::internal::callback_vari const&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:57 #1 0x7f8da3f4d6ce in stan::math::internal::callback_vari const&, stan::math::var_value const&)::{lambda(auto:1 const&)#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member access within misaligned address 0x531000282b6c for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x531000282b6c: note: pointer points here e1 fb 36 c0 58 67 6c a8 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da486a0c1 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member call on misaligned address 0x531000282b74 for type 'struct ._anon_1955', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da486a182 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59: runtime error: member access within misaligned address 0x531000282b74 for type 'struct ._anon_1955', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da486a16e in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #1 0x7f8da486a16e in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x531000282bac for type 'struct Map', which requires 8 byte alignment 0x531000282bac: note: pointer points here 00 00 00 00 2c 25 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 b8 67 6c a8 ^ #0 0x7f8da486a146 in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da486a146 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_op() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:178 #2 0x7f8da486a146 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #3 0x7f8da486a146 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:178:49: runtime error: reference binding to misaligned address 0x531000282bac for type 'const struct Map', which requires 8 byte alignment 0x531000282bac: note: pointer points here 00 00 00 00 2c 25 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 b8 67 6c a8 ^ #0 0x7f8da486a124 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_op() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:178 #1 0x7f8da486a124 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #2 0x7f8da486a124 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000282bac for type 'const struct Map', which requires 8 byte alignment 0x531000282bac: note: pointer points here 00 00 00 00 2c 25 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 b8 67 6c a8 ^ #0 0x7f8da486a110 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da486a110 in Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryOp(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:66 #2 0x7f8da486a110 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_op() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:178 #3 0x7f8da486a110 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #4 0x7f8da486a110 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000282bac for type 'const struct Map', which requires 8 byte alignment 0x531000282bac: note: pointer points here 00 00 00 00 2c 25 28 00 10 53 00 00 32 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 b8 67 6c a8 ^ #0 0x7f8da486a0fc in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da486a0fc in Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryOp(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:66 #2 0x7f8da486a0fc in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_op() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:178 #3 0x7f8da486a0fc in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #4 0x7f8da486a0fc in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59: runtime error: member access within misaligned address 0x531000282b74 for type 'struct ._anon_1955', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da4869f40 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #1 0x7f8da4869f40 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x531000282b8c for type 'struct Map', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 32 00 00 00 00 00 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4869f1e in Eigen::EigenBase, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da4869f1e in Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:184 #2 0x7f8da4869f1e in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #3 0x7f8da4869f1e in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64:66: runtime error: reference binding to misaligned address 0x531000282b8c for type 'const struct Map', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 32 00 00 00 00 00 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da486a207 in Eigen::Transpose, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #1 0x7f8da486a207 in Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:184 #2 0x7f8da486a207 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #3 0x7f8da486a207 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000282b8c for type 'const struct Map', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 32 00 00 00 00 00 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da486a229 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da486a229 in Eigen::Transpose, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #2 0x7f8da486a229 in Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:184 #3 0x7f8da486a229 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #4 0x7f8da486a229 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000282b8c for type 'const struct Map', which requires 8 byte alignment 0x531000282b8c: note: pointer points here 00 00 00 00 10 91 54 00 60 52 00 00 32 00 00 00 00 00 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4869ff3 in Eigen::Map, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da4869ff3 in Eigen::Transpose, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #2 0x7f8da4869ff3 in Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:184 #3 0x7f8da4869ff3 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #4 0x7f8da4869ff3 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x531000282b74 for type 'struct Map', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da4869fa0 in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da4869fa0 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da4869fa0 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #3 0x7f8da4869fa0 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x531000282b74 for type 'const struct Map', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da4869f62 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da4869f62 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da4869f62 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #3 0x7f8da4869f62 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000282b74 for type 'const struct Map', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da486a07f in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da486a07f in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da486a07f in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da486a07f in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #4 0x7f8da486a07f in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000282b74 for type 'const struct Map', which requires 8 byte alignment 0x531000282b74: note: pointer points here 8d 7f 00 00 c4 22 28 00 10 53 00 00 1b 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 10 91 54 00 ^ #0 0x7f8da486a05d in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da486a05d in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da486a05d in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da486a05d in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #4 0x7f8da486a05d in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x53100028252c for type 'const struct var_value', which requires 8 byte alignment 0x53100028252c: note: pointer points here 00 00 00 00 bc 26 28 00 10 53 00 00 d4 26 28 00 10 53 00 00 ec 26 28 00 10 53 00 00 04 27 28 00 ^ #0 0x7f8da486605a in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da486605a in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da486605a in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da486605a in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da486605a in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:22: runtime error: reference binding to misaligned address 0x53100028252c for type 'const struct var_value', which requires 8 byte alignment 0x53100028252c: note: pointer points here 00 00 00 00 bc 26 28 00 10 53 00 00 d4 26 28 00 10 53 00 00 ec 26 28 00 10 53 00 00 04 27 28 00 ^ #0 0x7f8da486600e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da486600e in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da486600e in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da486600e in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #8 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #9 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #10 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #20 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #21 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #22 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #23 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #24 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #25 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #26 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #27 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #28 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #29 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #30 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #31 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #32 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #33 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #34 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #43 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #44 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #51 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #67 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #68 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #69 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #85 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #86 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #87 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #94 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #95 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #96 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #97 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #98 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #99 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #100 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #101 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #102 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #103 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #104 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #105 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #106 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #107 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #108 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #109 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x53100028252c for type 'const struct var_value', which requires 8 byte alignment 0x53100028252c: note: pointer points here 00 00 00 00 bc 26 28 00 10 53 00 00 d4 26 28 00 10 53 00 00 ec 26 28 00 10 53 00 00 04 27 28 00 ^ #0 0x7f8da4865fc2 in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4865fc2 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4865fc2 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4865fc2 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4865fc2 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x5310002826bc for type 'struct vari_type', which requires 8 byte alignment 0x5310002826bc: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 22 69 2c a4 07 cb fb 3f 47 98 31 cc d0 82 5b c0 60 4c 6c a8 ^ #0 0x7f8da4865f6e in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4865f6e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4865f6e in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4865f6e in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4865f6e in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x5310002826cc for type 'const double', which requires 8 byte alignment 0x5310002826cc: note: pointer points here 07 cb fb 3f 47 98 31 cc d0 82 5b c0 60 4c 6c a8 8d 7f 00 00 96 14 08 eb fa 11 fd 3f 78 f0 71 67 ^ #0 0x7f8da4865cca in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4865cca in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4865cca in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4865cca in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4865cca in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:47: runtime error: load of misaligned address 0x5310002826cc for type 'const double', which requires 8 byte alignment 0x5310002826cc: note: pointer points here 07 cb fb 3f 47 98 31 cc d0 82 5b c0 60 4c 6c a8 8d 7f 00 00 96 14 08 eb fa 11 fd 3f 78 f0 71 67 ^ #0 0x7f8da4865c7e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da4865c7e in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4865c7e in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4865c7e in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #8 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #9 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #10 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #20 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #21 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #22 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #23 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #24 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #25 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #26 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #27 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #28 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #29 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #30 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #31 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #32 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #33 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #34 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #43 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #44 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #51 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #67 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #68 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #69 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #85 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #86 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #87 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #94 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #95 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #96 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #97 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #98 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #99 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #100 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #101 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #102 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #103 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #104 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #105 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #106 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #107 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #108 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #109 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917:18: runtime error: reference binding to misaligned address 0x531000282534 for type 'const struct var_value', which requires 8 byte alignment 0x531000282534: note: pointer points here 10 53 00 00 d4 26 28 00 10 53 00 00 ec 26 28 00 10 53 00 00 04 27 28 00 10 53 00 00 1c 27 28 00 ^ #0 0x7f8da4864527 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:917 #1 0x7f8da4864527 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4864527 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4864527 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4864527 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:22: runtime error: reference binding to misaligned address 0x531000282534 for type 'const struct var_value', which requires 8 byte alignment 0x531000282534: note: pointer points here 10 53 00 00 d4 26 28 00 10 53 00 00 ec 26 28 00 10 53 00 00 04 27 28 00 10 53 00 00 1c 27 28 00 ^ #0 0x7f8da486485f in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da486485f in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da486485f in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da486485f in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #8 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #9 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #10 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #20 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #21 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #22 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #23 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #24 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #25 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #26 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #27 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #28 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #29 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #30 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #31 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #32 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #33 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #34 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #43 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #44 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #51 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #67 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #68 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #69 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #85 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #86 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #87 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #94 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #95 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #96 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #97 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #98 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #99 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #100 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #101 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #102 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #103 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #104 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #105 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #106 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #107 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #108 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #109 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x531000282534 for type 'const struct var_value', which requires 8 byte alignment 0x531000282534: note: pointer points here 10 53 00 00 d4 26 28 00 10 53 00 00 ec 26 28 00 10 53 00 00 04 27 28 00 10 53 00 00 1c 27 28 00 ^ #0 0x7f8da48647f7 in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da48647f7 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da48647f7 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da48647f7 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da48647f7 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x5310002826d4 for type 'struct vari_type', which requires 8 byte alignment 0x5310002826d4: note: pointer points here d0 82 5b c0 60 4c 6c a8 8d 7f 00 00 96 14 08 eb fa 11 fd 3f 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 ^ #0 0x7f8da4864af8 in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4864af8 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4864af8 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4864af8 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4864af8 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x5310002826e4 for type 'const double', which requires 8 byte alignment 0x5310002826e4: note: pointer points here fa 11 fd 3f 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 8d 7f 00 00 f7 b8 9c 51 90 42 04 40 cd 3f 27 76 ^ #0 0x7f8da4864a13 in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4864a13 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #2 0x7f8da4864a13 in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4864a13 in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4864a13 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #9 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #10 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #13 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #14 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #15 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #16 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #17 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #18 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #19 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #20 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #21 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #22 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #23 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #24 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #25 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #26 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #27 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #28 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #29 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #30 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #31 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #32 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #33 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #34 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #35 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #55 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #56 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #57 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #58 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #59 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #68 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #69 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #70 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #86 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #87 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #88 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #95 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #96 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #97 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #98 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #99 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #100 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #101 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #102 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #103 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #104 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #105 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #106 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #107 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #108 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #109 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #111 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:47: runtime error: load of misaligned address 0x5310002826e4 for type 'const double', which requires 8 byte alignment 0x5310002826e4: note: pointer points here fa 11 fd 3f 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 8d 7f 00 00 f7 b8 9c 51 90 42 04 40 cd 3f 27 76 ^ #0 0x7f8da486499d in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589 #1 0x7f8da486499d in Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da486499d in Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da486499d in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4866952 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4866952 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4866952 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #7 0x7f8da4866952 in Eigen::PlainObjectBase >::PlainObjectBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::DenseBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594 #8 0x7f8da4866952 in Eigen::Matrix::Matrix, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >(Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:423 #9 0x7f8da4866952 in void Eigen::internal::gemv_dense_selector<2, 1, true>::run, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix >(Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, Eigen::Matrix::Scalar const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:320 #10 0x7f8da486916b in void Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388 #11 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #12 0x7f8da486916b in void Eigen::internal::generic_product_impl_base, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::DenseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #13 0x7f8da486916b in Eigen::internal::Assignment, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #14 0x7f8da486916b in void Eigen::internal::call_assignment_no_alias, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #15 0x7f8da486916b in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #16 0x7f8da486916b in void Eigen::PlainObjectBase >::_init1, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #17 0x7f8da486916b in Eigen::Matrix::Matrix, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #18 0x7f8da486916b in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #19 0x7f8da486916b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #20 0x7f8da486916b in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #21 0x7f8da486916b in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #22 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #23 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #24 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #25 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #26 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #27 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #28 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #29 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #30 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #31 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #32 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #33 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #34 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #39 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #41 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #43 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #44 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #51 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #54 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #55 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #56 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #57 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #58 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #67 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #68 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #69 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #77 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #85 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #86 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #87 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #94 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #95 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #96 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #97 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #98 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #99 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #100 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #101 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #102 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #103 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #104 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #105 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #106 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #107 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #108 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #109 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #110 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x5310002822c4 for type 'struct Scalar', which requires 8 byte alignment 0x5310002822c4: note: pointer points here 00 00 00 00 00 08 28 00 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 ^ #0 0x7f8da4869cfd in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4869cfd in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4869cfd in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4869cfd in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4869cfd in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4869cfd in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4869cfd in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4869cfd in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #8 0x7f8da4869cfd in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #9 0x7f8da4869cfd in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #10 0x7f8da4869cfd in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:22: runtime error: reference binding to misaligned address 0x5310002822c4 for type 'struct var_value', which requires 8 byte alignment 0x5310002822c4: note: pointer points here 00 00 00 00 00 08 28 00 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 ^ #0 0x7f8da4869c95 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da4869c95 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4869c95 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4869c95 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4869c95 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4869c95 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4869c95 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #7 0x7f8da4869c95 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #8 0x7f8da4869c95 in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #9 0x7f8da4869c95 in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x5310002822c4 for type 'struct var_value', which requires 8 byte alignment 0x5310002822c4: note: pointer points here 00 00 00 00 00 08 28 00 10 53 00 00 18 08 28 00 10 53 00 00 30 08 28 00 10 53 00 00 48 08 28 00 ^ #0 0x7f8da4869a1a in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4869a1a in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4869a1a in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4869a1a in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4869a1a in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4869a1a in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4869a1a in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4869a1a in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #8 0x7f8da4869a1a in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+=, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryOp, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #9 0x7f8da4869a1a in stan::math::multiply, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:59 #10 0x7f8da4869a1a in stan::math::internal::reverse_pass_callback_vari, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0>(Eigen::Map, 0, Eigen::Stride<0, 0> > const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#2}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #11 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #12 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #13 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #14 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #15 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #16 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #17 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #18 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #19 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #20 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #21 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #22 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #23 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #24 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #25 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #32 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #33 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #34 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #35 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #38 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #40 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #56 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #57 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #58 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #73 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #74 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #75 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #76 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #83 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #84 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #85 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #86 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #87 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #88 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #89 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #90 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #91 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #92 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #93 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #94 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #95 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #96 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #97 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #99 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member access within misaligned address 0x5310002821ac for type 'struct reverse_pass_callback_vari', which requires 8 byte alignment 0x5310002821ac: note: pointer points here e1 fb 36 c0 f8 66 6c a8 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 ^ #0 0x7f8da41e0277 in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19: runtime error: member call on misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e028c in stan::math::internal::reverse_pass_callback_vari, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/reverse_pass_callback.hpp:19 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:147: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e0054 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:147 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member access within misaligned address 0x5310002821b4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3fb69e1 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da41ddce3 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:147 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member access within misaligned address 0x5310002821b4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3fb6a9b in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da41ddce3 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:147 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95: runtime error: member access within misaligned address 0x5310002821b4 for type 'const struct var_value', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da3fb6a57 in stan::math::var_value::val() const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:95 #1 0x7f8da41ddce3 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:147 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e01cd in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91:67: runtime error: member access within misaligned address 0x5310002821d4 for type 'const struct MapBase', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e007e in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #1 0x7f8da41e007e in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91:67: runtime error: member call on misaligned address 0x5310002821dc for type 'const struct variable_if_dynamic', which requires 8 byte alignment 0x5310002821dc: note: pointer points here 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e0023 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #1 0x7f8da41e0023 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91:55: runtime error: member access within misaligned address 0x5310002821d4 for type 'const struct MapBase', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e012c in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #1 0x7f8da41e012c in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:147:68: runtime error: member access within misaligned address 0x5310002821dc for type 'const struct variable_if_dynamic', which requires 8 byte alignment 0x5310002821dc: note: pointer points here 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41e00ec in Eigen::internal::variable_if_dynamic::value() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:147 #1 0x7f8da41e00ec in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #2 0x7f8da41e00ec in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41decfe in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x5310002821d4 for type 'struct Map', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41dfabb in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da41dfabb in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da41dfabb in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x5310002821d4 for type 'const struct Map', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41dfa5d in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da41dfa5d in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da41dfa5d in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x5310002821d4 for type 'const struct Map', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41df42a in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da41df42a in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da41df42a in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da41df42a in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x5310002821d4 for type 'const struct Map', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41df3f8 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da41df3f8 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da41df3f8 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da41df3f8 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:923:18: runtime error: reference binding to misaligned address 0x531000281dcc for type 'struct Scalar', which requires 8 byte alignment 0x531000281dcc: note: pointer points here 00 00 00 00 c4 1e 28 00 10 53 00 00 dc 1e 28 00 10 53 00 00 f4 1e 28 00 10 53 00 00 0c 1f 28 00 ^ #0 0x7f8da41dff3b in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:923 #1 0x7f8da41dff3b in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41dff3b in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41dff3b in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851:22: runtime error: reference binding to misaligned address 0x531000281dcc for type 'struct var_value', which requires 8 byte alignment 0x531000281dcc: note: pointer points here 00 00 00 00 c4 1e 28 00 10 53 00 00 dc 1e 28 00 10 53 00 00 f4 1e 28 00 10 53 00 00 0c 1f 28 00 ^ #0 0x7f8da41dfefb in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #1 0x7f8da41dfefb in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #2 0x7f8da41dfefb in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x531000281dcc for type 'struct var_value', which requires 8 byte alignment 0x531000281dcc: note: pointer points here 00 00 00 00 c4 1e 28 00 10 53 00 00 dc 1e 28 00 10 53 00 00 f4 1e 28 00 10 53 00 00 0c 1f 28 00 ^ #0 0x7f8da41dfebb in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da41dfebb in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41dfebb in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41dfebb in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x531000281ec4 for type 'struct vari_type', which requires 8 byte alignment 0x531000281ec4: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 0b 2c 3f aa 1a bd 1c 40 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 ^ #0 0x7f8da41de928 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da41de928 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41de928 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41de928 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x531000281ed4 for type 'double', which requires 8 byte alignment 0x531000281ed4: note: pointer points here 1a bd 1c 40 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 8d 7f 00 00 44 1c 88 ba 02 d6 08 40 cd 3f 27 76 ^ #0 0x7f8da41de8a5 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da41de8a5 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41de8a5 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41de8a5 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851:53: runtime error: reference binding to misaligned address 0x531000281ed4 for type 'Scalar', which requires 8 byte alignment 0x531000281ed4: note: pointer points here 1a bd 1c 40 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 8d 7f 00 00 44 1c 88 ba 02 d6 08 40 cd 3f 27 76 ^ #0 0x7f8da41dfe7b in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #1 0x7f8da41dfe7b in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #2 0x7f8da41dfe7b in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346:70: runtime error: reference binding to misaligned address 0x531000281ed4 for type 'Scalar', which requires 8 byte alignment 0x531000281ed4: note: pointer points here 1a bd 1c 40 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 8d 7f 00 00 44 1c 88 ba 02 d6 08 40 cd 3f 27 76 ^ #0 0x7f8da41dfe3b in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #1 0x7f8da41dfe3b in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150: runtime error: load of misaligned address 0x531000281ed4 for type 'Scalar', which requires 8 byte alignment 0x531000281ed4: note: pointer points here 1a bd 1c 40 78 f0 71 67 e5 3e 5d c0 60 4c 6c a8 8d 7f 00 00 44 1c 88 ba 02 d6 08 40 cd 3f 27 76 ^ #0 0x7f8da41dfdfb in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:150 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41dfda4 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x5310002821bc for type 'struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41dfd46 in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da41dfd46 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:110 #2 0x7f8da41dfd46 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x5310002821bc for type 'const struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41dfc90 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da41dfc90 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:110 #2 0x7f8da41dfc90 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x5310002821bc for type 'const struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41dfc32 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da41dfc32 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da41dfc32 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:110 #3 0x7f8da41dfc32 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x5310002821bc for type 'const struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41dfbd4 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da41dfbd4 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da41dfbd4 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:110 #3 0x7f8da41dfbd4 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911:18: runtime error: reference binding to misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da41dee08 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911 #1 0x7f8da41dee08 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da41dee08 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da41dee08 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:22: runtime error: reference binding to misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da41ded8e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da41ded8e in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #2 0x7f8da41ded8e in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da41defa8 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da41defa8 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da41defa8 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da41defa8 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_type', which requires 8 byte alignment 0x531000281774: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41def1f in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da41def1f in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da41def1f in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da41def1f in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: reference binding to misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da41df394 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da41df394 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da41df394 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da41df394 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:41: runtime error: member access within misaligned address 0x531000281bdc for type 'const struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da41df2fe in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da41df2fe in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da41df2fe in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da41df2fe in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64:46: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_type', which requires 8 byte alignment 0x531000281774: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41df268 in std::enable_if<((!std::is_pointer const>::value)&&(!Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::is_fvar const, void>::value))&&(!std::is_arithmetic const>::value), double const&>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:64 #1 0x7f8da41df268 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da41df268 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da41df268 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:50: runtime error: reference binding to misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da41df1d2 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da41df1d2 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #2 0x7f8da41df1d2 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101:67: runtime error: reference binding to misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da41df13c in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #1 0x7f8da41df13c in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151: runtime error: load of misaligned address 0x53100028177c for type 'const double', which requires 8 byte alignment 0x53100028177c: note: pointer points here 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 ^ #0 0x7f8da41df0ad in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41df023 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:115: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct var_value', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41df77c in stan::math::var_value::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:115 #1 0x7f8da41df77c in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:151 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41df4e5 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x5310002821bc for type 'struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41dfa0e in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da41dfa0e in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da41dfa0e in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x5310002821bc for type 'const struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41df93c in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da41df93c in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da41df93c in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x5310002821bc for type 'const struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41df8d0 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da41df8d0 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da41df8d0 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da41df8d0 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x5310002821bc for type 'const struct Map', which requires 8 byte alignment 0x5310002821bc: note: pointer points here 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 cc 1d 28 00 ^ #0 0x7f8da41df864 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da41df864 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da41df864 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da41df864 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:923:18: runtime error: reference binding to misaligned address 0x531000281bdc for type 'struct Scalar', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da41df489 in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:923 #1 0x7f8da41df489 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41df489 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41df489 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851:22: runtime error: reference binding to misaligned address 0x531000281bdc for type 'struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da41de9ca in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #1 0x7f8da41de9ca in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #2 0x7f8da41de9ca in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x531000281bdc for type 'struct var_value', which requires 8 byte alignment 0x531000281bdc: note: pointer points here 00 00 00 00 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da41de97a in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da41de97a in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41de97a in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41de97a in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_type', which requires 8 byte alignment 0x531000281774: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 ^ #0 0x7f8da41dead9 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da41dead9 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41dead9 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41dead9 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x531000281784 for type 'double', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f 00 00 00 00 ^ #0 0x7f8da41dea21 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da41dea21 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #2 0x7f8da41dea21 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #3 0x7f8da41dea21 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851:53: runtime error: reference binding to misaligned address 0x531000281784 for type 'Scalar', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f 00 00 00 00 ^ #0 0x7f8da41decb6 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:851 #1 0x7f8da41decb6 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #2 0x7f8da41decb6 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346:70: runtime error: reference binding to misaligned address 0x531000281784 for type 'Scalar', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f 00 00 00 00 ^ #0 0x7f8da41dec58 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>::coeffRef(long, long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:346 #1 0x7f8da41dec58 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152: runtime error: load of misaligned address 0x531000281784 for type 'Scalar', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 00 00 00 00 00 00 00 00 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f 00 00 00 00 ^ #0 0x7f8da41dec01 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:152 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149: runtime error: member access within misaligned address 0x5310002821b4 for type 'struct ._anon_1939', which requires 8 byte alignment 0x5310002821b4: note: pointer points here 8d 7f 00 00 e8 11 28 00 10 53 00 00 dc 1b 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41debb8 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91:67: runtime error: member access within misaligned address 0x5310002821d4 for type 'const struct MapBase', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41deb86 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #1 0x7f8da41deb86 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91:67: runtime error: member call on misaligned address 0x5310002821dc for type 'const struct variable_if_dynamic', which requires 8 byte alignment 0x5310002821dc: note: pointer points here 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41deb54 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #1 0x7f8da41deb54 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91:55: runtime error: member access within misaligned address 0x5310002821d4 for type 'const struct MapBase', which requires 8 byte alignment 0x5310002821d4: note: pointer points here 00 00 00 00 cc 1d 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41deb22 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #1 0x7f8da41deb22 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #2 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #3 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #4 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #5 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #6 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #7 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #8 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #23 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #24 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #25 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #26 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #29 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #31 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #32 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #33 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #43 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #44 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #45 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #46 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #47 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #48 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #49 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #56 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #57 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #65 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #66 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #67 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #68 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #69 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #71 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #72 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #73 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #74 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #75 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #76 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #77 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #78 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #81 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #83 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #84 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #85 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #86 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #87 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:147:68: runtime error: member access within misaligned address 0x5310002821dc for type 'const struct variable_if_dynamic', which requires 8 byte alignment 0x5310002821dc: note: pointer points here 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da41ded38 in Eigen::internal::variable_if_dynamic::value() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:147 #1 0x7f8da41ded38 in Eigen::MapBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>::rows() const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/MapBase.h:91 #2 0x7f8da41ded38 in stan::math::multiply, Eigen::Matrix, -1, 1, 0, -1, 1>, (void*)0, (void*)0, (void*)0, (void*)0>(stan::math::var_value const&, Eigen::Matrix, -1, 1, 0, -1, 1> const&)::{lambda()#1}::operator()() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/multiply.hpp:149 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: member call on misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 32 44 63 c0 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 7c 16 28 00 ^ #0 0x7f8da4c02234 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 32 44 63 c0 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 7c 16 28 00 ^ #0 0x7f8da4c0231a in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 32 44 63 c0 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 7c 16 28 00 ^ #0 0x7f8da4c022ea in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: reference binding to misaligned address 0x531000281acc for type 'struct arena_matrix', which requires 8 byte alignment 0x531000281acc: note: pointer points here 00 00 00 00 8c 14 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c022b6 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 32 44 63 c0 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 7c 16 28 00 ^ #0 0x7f8da4c0229a in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: reference binding to misaligned address 0x531000281a8c for type 'struct Map', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c0227e in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: member access within misaligned address 0x531000281a5c for type 'struct csr_adjoint', which requires 8 byte alignment 0x531000281a5c: note: pointer points here 32 44 63 c0 d8 66 6c a8 8d 7f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 7c 16 28 00 ^ #0 0x7f8da4c02265 in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27: runtime error: reference binding to misaligned address 0x531000281a74 for type 'struct arena_matrix', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c0224c in stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:27 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x531000281a74 for type 'struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01d2f in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da4c01d2f in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da4c01d2f in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x531000281a74 for type 'const struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01f2b in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da4c01f2b in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da4c01f2b in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000281a74 for type 'const struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01f09 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da4c01f09 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da4c01f09 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da4c01f09 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000281a74 for type 'const struct Map', which requires 8 byte alignment 0x531000281a74: note: pointer points here 00 00 00 00 7c 16 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01ee7 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da4c01ee7 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da4c01ee7 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da4c01ee7 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47: runtime error: member access within misaligned address 0x531000281a8c for type 'struct Map', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01e7f in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #1 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #2 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #3 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #4 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #5 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #6 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #7 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #8 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #9 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #10 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #11 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #12 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #14 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #15 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #16 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #17 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #18 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #19 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #20 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #21 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #22 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #23 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #24 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #25 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #27 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #28 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #29 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #30 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #31 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #32 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #42 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #43 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #46 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #47 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #48 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #49 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #50 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #55 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #56 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #64 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #65 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #66 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #67 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #68 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #70 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #71 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #72 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #73 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #74 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #75 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #82 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #83 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #84 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #85 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #86 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #87 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #88 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #89 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:144:41: runtime error: reference binding to misaligned address 0x531000281a8c for type 'struct Map', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01fc2 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:144 #1 0x7f8da4c01fc2 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:354 #2 0x7f8da4c01fc2 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64:66: runtime error: reference binding to misaligned address 0x531000281a8c for type 'const struct Map', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c02006 in Eigen::Transpose const, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map const, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #1 0x7f8da4c02006 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:354 #2 0x7f8da4c02006 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255:7: runtime error: member access within misaligned address 0x531000281a8c for type 'const struct Map', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01fe4 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #1 0x7f8da4c01fe4 in Eigen::Transpose const, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map const, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #2 0x7f8da4c01fe4 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:354 #3 0x7f8da4c01fe4 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255:7: runtime error: member access within misaligned address 0x531000281a8c for type 'const struct Map', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01f84 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #1 0x7f8da4c01f84 in Eigen::Transpose const, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map const, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #2 0x7f8da4c01f84 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:354 #3 0x7f8da4c01f84 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: runtime error: member access within misaligned address 0x531000281a8c for type 'const struct SparseMapBase', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429b16a in Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0>::SparseMapBase(Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50 #1 0x7f8da4c00e15 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #2 0x7f8da4c00e15 in Eigen::Transpose const, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map const, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #3 0x7f8da4c00e15 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:354 #4 0x7f8da4c00e15 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: runtime error: member access within misaligned address 0x531000281a8c for type 'const struct SparseMapBase', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429b383 in Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0>::SparseMapBase(Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50 #1 0x7f8da4c00e15 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #2 0x7f8da4c00e15 in Eigen::Transpose const, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map const, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #3 0x7f8da4c00e15 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:354 #4 0x7f8da4c00e15 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: runtime error: member access within misaligned address 0x531000281a8c for type 'const struct SparseMapBase', which requires 8 byte alignment 0x531000281a8c: note: pointer points here 00 00 00 00 00 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da429b19d in Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0>::SparseMapBase(Eigen::SparseMapBase const, 0, Eigen::Stride<0, 0> >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50 #1 0x7f8da4c00e15 in Eigen::Map const, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map const, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:255 #2 0x7f8da4c00e15 in Eigen::Transpose const, 0, Eigen::Stride<0, 0> > >::Transpose(Eigen::Map const, 0, Eigen::Stride<0, 0> >&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:64 #3 0x7f8da4c00e15 in Eigen::SparseMatrixBase const, 0, Eigen::Stride<0, 0> > >::transpose() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:354 #4 0x7f8da4c00e15 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #5 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #6 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #7 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #8 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #9 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #10 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #11 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #12 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #13 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #14 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #15 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #16 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #17 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #18 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #19 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #20 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #22 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #26 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #27 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #43 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #44 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #45 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #50 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #51 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #52 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #53 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #54 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #55 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #57 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #59 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #60 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #68 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #69 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #77 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #78 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #79 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #86 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #87 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #88 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #89 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #90 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #91 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #93 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46:32: runtime error: reference binding to misaligned address 0x531000281acc for type 'struct Map', which requires 8 byte alignment 0x531000281acc: note: pointer points here 00 00 00 00 8c 14 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01f62 in Eigen::EigenBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::derived() /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/EigenBase.h:46 #1 0x7f8da4c01f62 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da4c01f62 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68:9: runtime error: reference binding to misaligned address 0x531000281acc for type 'const struct Map', which requires 8 byte alignment 0x531000281acc: note: pointer points here 00 00 00 00 8c 14 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01e53 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #1 0x7f8da4c01e53 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #2 0x7f8da4c01e53 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #3 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #4 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #5 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #6 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #7 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #8 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #9 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #10 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #11 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #12 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #13 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #14 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #15 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #16 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #17 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #18 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #20 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #22 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #24 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #25 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #26 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #27 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #33 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #34 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #35 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #36 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #37 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #38 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #44 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #45 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #48 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #49 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #50 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #57 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #58 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #59 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #60 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #63 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #65 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #66 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #67 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #75 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #76 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #77 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #78 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #79 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #81 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #82 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #83 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #84 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #85 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #86 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #87 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #88 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #90 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000281acc for type 'const struct Map', which requires 8 byte alignment 0x531000281acc: note: pointer points here 00 00 00 00 8c 14 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01e31 in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da4c01e31 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da4c01e31 in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da4c01e31 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162:5: runtime error: member access within misaligned address 0x531000281acc for type 'const struct Map', which requires 8 byte alignment 0x531000281acc: note: pointer points here 00 00 00 00 8c 14 28 00 10 53 00 00 1f 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 ^ #0 0x7f8da4c01e0f in Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >::Map(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Map.h:162 #1 0x7f8da4c01e0f in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::CwiseUnaryView(Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >&, Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:68 #2 0x7f8da4c01e0f in Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj() /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:187 #3 0x7f8da4c01e0f in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #4 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #5 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #6 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #7 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #8 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #9 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #10 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #11 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #12 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #13 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #14 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #15 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #16 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #17 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #18 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #19 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #21 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #23 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #25 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #26 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #27 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #28 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #34 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #35 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #36 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #37 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #38 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #39 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #45 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #46 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #49 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #50 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #51 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #52 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #53 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #56 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #58 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #59 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #60 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #61 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #63 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #64 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #65 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #66 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #67 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #68 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #76 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #77 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #78 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #85 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #86 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #87 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #88 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #89 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #90 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #91 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #92 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911:18: runtime error: reference binding to misaligned address 0x53100028167c for type 'const struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da4bff93e in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:911 #1 0x7f8da4bff93e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da4bff93e in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da4bff93e in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #4 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #5 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #6 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #7 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #8 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #9 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #10 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #11 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #12 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #13 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #14 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #15 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #16 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #17 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #18 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #19 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:22: runtime error: reference binding to misaligned address 0x53100028167c for type 'const struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da4bffe51 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da4bffe51 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #2 0x7f8da4bffe51 in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #3 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #4 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #5 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #6 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #7 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #8 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #10 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #11 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #12 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #13 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #14 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #15 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #16 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #17 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #18 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #19 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #20 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #21 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #22 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #23 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #24 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #25 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #26 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #27 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #28 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #36 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #37 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #38 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #39 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #44 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #51 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #60 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #61 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #62 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #78 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #79 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #80 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #87 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #88 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #89 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #96 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #97 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #98 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #99 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #100 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #101 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x53100028167c for type 'const struct var_value', which requires 8 byte alignment 0x53100028167c: note: pointer points here be be be be 74 17 28 00 10 53 00 00 8c 17 28 00 10 53 00 00 a4 17 28 00 10 53 00 00 bc 17 28 00 ^ #0 0x7f8da4bffe11 in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4bffe11 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da4bffe11 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da4bffe11 in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #4 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #5 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #6 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #7 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #8 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #9 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #10 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #11 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #12 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #13 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #14 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #15 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #16 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #17 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #18 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #19 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: member access within misaligned address 0x531000281774 for type 'struct vari_type', which requires 8 byte alignment 0x531000281774: note: pointer points here 10 53 00 00 60 4c 6c a8 8d 7f 00 00 ba 6a 84 69 57 24 f1 3f 02 4b c2 dd ee 83 88 c0 60 4c 6c a8 ^ #0 0x7f8da4bffdc9 in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4bffdc9 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da4bffdc9 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da4bffdc9 in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #4 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #5 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #6 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #7 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #8 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #9 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #10 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #11 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #12 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #13 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #14 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #15 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #16 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #17 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #18 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #19 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:46: runtime error: reference binding to misaligned address 0x531000281784 for type 'const double', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 02 4b c2 dd ee 83 88 c0 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f e7 e4 29 93 ^ #0 0x7f8da4bffd46 in std::enable_if const>::value, std::conditional const>::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() const>(stan::math::var_value const&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4bffd46 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #2 0x7f8da4bffd46 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #3 0x7f8da4bffd46 in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #4 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #5 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #6 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #7 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #8 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #9 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #10 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #11 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #12 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #13 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #14 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #15 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #16 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #17 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #18 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #19 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #20 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #21 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #22 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #23 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #24 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #25 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #26 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #27 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #28 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #29 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #30 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #31 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #33 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #37 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #38 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #39 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #40 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #43 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #45 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #52 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #55 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #56 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #61 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #62 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #63 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #64 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #65 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #66 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #67 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #68 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #69 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #70 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #71 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #72 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #73 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #74 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #75 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #76 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #77 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #78 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #79 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #80 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #81 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #82 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #83 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #84 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #85 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #86 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #87 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #88 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #89 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #90 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #91 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #92 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #93 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #94 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #95 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #96 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #97 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #98 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #99 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #100 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #101 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #102 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #104 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839:50: runtime error: reference binding to misaligned address 0x531000281784 for type 'const double', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 02 4b c2 dd ee 83 88 c0 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f e7 e4 29 93 ^ #0 0x7f8da4bffd06 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:839 #1 0x7f8da4bffd06 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #2 0x7f8da4bffd06 in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #3 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #4 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #5 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #6 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #7 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #8 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #9 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #10 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #11 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #12 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #13 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #14 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #15 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #16 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #17 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #18 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #19 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #20 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #21 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #22 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #23 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #24 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #25 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #26 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #27 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #28 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #29 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #35 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #36 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #37 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #38 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #39 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #42 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #44 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #51 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #54 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #55 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #60 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #61 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #62 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #63 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #64 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #66 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #67 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #68 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #69 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #70 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #71 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #72 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #73 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #74 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #75 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #76 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #77 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #78 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #79 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #80 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #81 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #82 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #83 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #84 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #85 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #86 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #87 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #88 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #89 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #90 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #91 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #92 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #93 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #94 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #95 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #96 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #97 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #98 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #99 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #100 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #101 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #103 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101:67: runtime error: reference binding to misaligned address 0x531000281784 for type 'const double', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 02 4b c2 dd ee 83 88 c0 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f e7 e4 29 93 ^ #0 0x7f8da4bffcc6 in Eigen::DenseCoeffsBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>::coeff(long, long) const /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:101 #1 0x7f8da4bffcc6 in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #2 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #3 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #4 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #5 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #6 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #7 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #8 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #9 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #10 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #11 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #12 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #13 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #14 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #15 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #16 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #17 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #18 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #19 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #20 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #21 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #22 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #23 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #24 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #25 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #26 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #27 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #28 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #29 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #31 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #34 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #35 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #36 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #37 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #38 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #40 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #41 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #42 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #43 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #48 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #49 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #50 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #51 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #53 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #55 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #56 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #59 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #60 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #61 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #62 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #63 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #65 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #66 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #67 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #68 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #69 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #70 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #71 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #73 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #74 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #75 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #76 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #77 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #78 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #79 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #80 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #81 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #82 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #83 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #84 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #85 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #86 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #87 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #88 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #89 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #90 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #91 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #92 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #93 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #94 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #95 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #96 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #97 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #98 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #99 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #100 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #102 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101:96: runtime error: load of misaligned address 0x531000281784 for type 'const double', which requires 8 byte alignment 0x531000281784: note: pointer points here 57 24 f1 3f 02 4b c2 dd ee 83 88 c0 60 4c 6c a8 8d 7f 00 00 a4 bc 01 94 cf a0 dd 3f e7 e4 29 93 ^ #0 0x7f8da4bffc86 in Eigen::internal::sparse_time_dense_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double, 0, true>::run(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:101 #1 0x7f8da4c01231 in void Eigen::internal::sparse_time_dense_product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, double>(Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, Eigen::Matrix&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:171 #2 0x7f8da4c01231 in void Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7>::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseCore/SparseDenseProduct.h:191 #3 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::scaleAndAddTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&, double const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361 #4 0x7f8da4c01231 in void Eigen::internal::generic_product_impl_base const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::generic_product_impl const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::SparseShape, Eigen::DenseShape, 7> >::evalTo >(Eigen::Matrix&, Eigen::Transpose const, 0, Eigen::Stride<0, 0> > > const&, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349 #5 0x7f8da4c01231 in Eigen::internal::Assignment, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148 #6 0x7f8da4c01231 in void Eigen::internal::call_assignment_no_alias, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4c01231 in Eigen::Matrix& Eigen::PlainObjectBase >::_set_noalias const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797 #8 0x7f8da4c01231 in void Eigen::PlainObjectBase >::_init1 const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::DenseBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883 #9 0x7f8da4c01231 in Eigen::Matrix::Matrix const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Matrix.h:332 #10 0x7f8da4c01231 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850 #11 0x7f8da4c01231 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #12 0x7f8da4c01231 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #13 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #14 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #15 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #16 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #17 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #18 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #19 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #20 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #21 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #22 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #23 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #24 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #25 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #26 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #27 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #28 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #30 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #32 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #34 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #35 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #47 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #48 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #49 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #50 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #52 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #54 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #55 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #57 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #58 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #59 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #60 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #61 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #62 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #64 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #65 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #66 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #67 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #68 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #69 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #70 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #72 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #73 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #74 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #75 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #76 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #77 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #78 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #79 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #80 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #81 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #82 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #83 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #84 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #85 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #86 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #87 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #88 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #89 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #91 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #92 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #93 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #94 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #95 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #96 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #97 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #98 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #100 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #101 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929:18: runtime error: reference binding to misaligned address 0x53100028148c for type 'struct Scalar', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be 88 0a 28 00 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 ^ #0 0x7f8da4c0192e in Eigen::internal::mapbase_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, -1, 1, 0, -1, 1> >::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:929 #1 0x7f8da4c0192e in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4c0192e in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4c0192e in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4c0192e in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4c0192e in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4c0192e in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4c0192e in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #8 0x7f8da4c0192e in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #9 0x7f8da4c0192e in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857:22: runtime error: reference binding to misaligned address 0x53100028148c for type 'struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be 88 0a 28 00 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 ^ #0 0x7f8da4c01cce in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #1 0x7f8da4c01cce in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #2 0x7f8da4c01cce in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #3 0x7f8da4c01cce in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #4 0x7f8da4c01cce in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #5 0x7f8da4c01cce in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #6 0x7f8da4c01cce in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #7 0x7f8da4c01cce in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #8 0x7f8da4c01cce in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #9 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #10 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #11 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #12 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #13 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #14 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #15 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #16 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #17 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #18 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #19 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #20 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #21 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #22 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #23 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #24 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #25 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #26 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #27 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #28 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #30 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #31 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #32 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #33 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #35 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #36 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #37 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #38 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #39 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #40 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #41 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #42 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #43 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #44 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #45 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #46 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #48 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #50 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #51 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #53 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #54 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #55 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #56 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #57 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #58 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #60 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #61 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #62 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #63 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #64 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #72 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #73 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #74 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #75 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #76 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #77 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #78 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #79 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #80 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #81 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #82 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #83 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #84 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #85 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #87 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #88 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #89 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #90 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #91 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #92 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #93 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #94 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #95 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #96 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160:41: runtime error: member access within misaligned address 0x53100028148c for type 'struct var_value', which requires 8 byte alignment 0x53100028148c: note: pointer points here be be be be 88 0a 28 00 10 53 00 00 a0 0a 28 00 10 53 00 00 b8 0a 28 00 10 53 00 00 d0 0a 28 00 ^ #0 0x7f8da4c01c66 in std::enable_if >::value, std::conditional >::type>::value, double const&, double&>::type>::type Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op::operator() >(stan::math::var_value&) const /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/eigen_plugins.h:160 #1 0x7f8da4c01c66 in Eigen::internal::unary_evaluator, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, double>::coeffRef(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:857 #2 0x7f8da4c01c66 in Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>::assignCoeff(long) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660 #3 0x7f8da4c01c66 in Eigen::internal::dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>, 1, 0>::run(Eigen::internal::generic_dense_assignment_kernel, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::internal::evaluator >, Eigen::internal::add_assign_op, 0>&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:518 #4 0x7f8da4c01c66 in void Eigen::internal::call_dense_assignment_loop, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785 #5 0x7f8da4c01c66 in Eigen::internal::Assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954 #6 0x7f8da4c01c66 in void Eigen::internal::call_assignment_no_alias, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Matrix const&, Eigen::internal::add_assign_op const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890 #7 0x7f8da4c01c66 in void Eigen::internal::call_assignment, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::add_assign_op >(Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >&, Eigen::Product const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> const&, Eigen::internal::add_assign_op const&, Eigen::internal::enable_if const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::internal::evaluator_traits const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >::Shape>::value, void*>::type) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851 #8 0x7f8da4c01c66 in Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >& Eigen::MatrixBase, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >::operator+= const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> >(Eigen::MatrixBase const, 0, Eigen::Stride<0, 0> > >, Eigen::CwiseUnaryView, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0> > const&) /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177 #9 0x7f8da4c01c66 in void stan::math::internal::csr_adjoint, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&>::chain_internal, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, (void*)0, (void*)0>(stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&, Eigen::Map const, 0, Eigen::Stride<0, 0> >&, stan::math::arena_matrix, -1, 1, 0, -1, 1>, void>&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:47 #10 0x7f8da3ddaf41 in grad /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:30 #11 0x7f8da3ddaf41 in grad > /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/grad.hpp:53 #12 0x7f8da3f3a8b4 in stan::math::var_value::grad(std::vector, std::allocator > >&, std::vector >&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/var.hpp:133 #13 0x7f8da3f3a8b4 in double stan::model::log_prob_grad(model_binomial_1par_namespace::model_binomial_1par const&, std::vector >&, std::vector >&, std::vector >&, std::ostream*) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43 #14 0x7f8da4a04987 in std::vector > stan::services::util::initialize, boost::random::linear_congruential_engine > >(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, double, bool, stan::callbacks::logger&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/initialize.hpp:167 #15 0x7f8da4c2c8b3 in int stan::services::diagnose::diagnose(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, double, double, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49 #16 0x7f8da4c2c8b3 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:481 #17 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #18 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #19 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #20 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #21 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #22 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #23 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #24 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #25 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #27 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #29 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #31 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #32 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #33 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #34 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #37 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #39 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #40 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #41 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #42 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #43 0x6a6d5c in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2892 #44 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #45 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #46 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #47 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #49 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #51 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #52 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #54 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #55 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #56 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #57 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #58 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #59 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #61 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #62 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #63 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #64 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #65 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #66 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #67 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #68 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #69 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #70 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #71 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #72 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #73 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #74 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #75 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #76 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #77 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #78 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #79 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #80 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #81 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #82 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #83 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #84 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #85 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #86 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #87 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #88 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #89 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #90 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #91 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #92 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #93 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #94 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #95 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #96 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #97 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #98 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000313 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.13 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 7 Chain 1: adapt_window = 38 Chain 1: term_buffer = 5 Chain 1: Chain 1: Iteration: 1 / 100 [ 1%] (Warmup) Chain 1: Iteration: 10 / 100 [ 10%] (Warmup) Chain 1: Iteration: 20 / 100 [ 20%] (Warmup) Chain 1: Iteration: 30 / 100 [ 30%] (Warmup) Chain 1: Iteration: 40 / 100 [ 40%] (Warmup) Chain 1: Iteration: 50 / 100 [ 50%] (Warmup) Chain 1: Iteration: 51 / 100 [ 51%] (Sampling) Chain 1: Iteration: 60 / 100 [ 60%] (Sampling) Chain 1: Iteration: 70 / 100 [ 70%] (Sampling) Chain 1: Iteration: 80 / 100 [ 80%] (Sampling) Chain 1: Iteration: 90 / 100 [ 90%] (Sampling) Chain 1: Iteration: 100 / 100 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.368 seconds (Warm-up) Chain 1: 0.392 seconds (Sampling) Chain 1: 0.76 seconds (Total) Chain 1: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.000214 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.14 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: There aren't enough warmup iterations to fit the Chain 2: three stages of adaptation as currently configured. Chain 2: Reducing each adaptation stage to 15%/75%/10% of Chain 2: the given number of warmup iterations: Chain 2: init_buffer = 7 Chain 2: adapt_window = 38 Chain 2: term_buffer = 5 Chain 2: Chain 2: Iteration: 1 / 100 [ 1%] (Warmup) Chain 2: Iteration: 10 / 100 [ 10%] (Warmup) Chain 2: Iteration: 20 / 100 [ 20%] (Warmup) Chain 2: Iteration: 30 / 100 [ 30%] (Warmup) Chain 2: Iteration: 40 / 100 [ 40%] (Warmup) Chain 2: Iteration: 50 / 100 [ 50%] (Warmup) Chain 2: Iteration: 51 / 100 [ 51%] (Sampling) Chain 2: Iteration: 60 / 100 [ 60%] (Sampling) Chain 2: Iteration: 70 / 100 [ 70%] (Sampling) Chain 2: Iteration: 80 / 100 [ 80%] (Sampling) Chain 2: Iteration: 90 / 100 [ 90%] (Sampling) Chain 2: Iteration: 100 / 100 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.487 seconds (Warm-up) Chain 2: 0.385 seconds (Sampling) Chain 2: 0.872 seconds (Total) Chain 2: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000202 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.02 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: There aren't enough warmup iterations to fit the Chain 3: three stages of adaptation as currently configured. Chain 3: Reducing each adaptation stage to 15%/75%/10% of Chain 3: the given number of warmup iterations: Chain 3: init_buffer = 7 Chain 3: adapt_window = 38 Chain 3: term_buffer = 5 Chain 3: Chain 3: Iteration: 1 / 100 [ 1%] (Warmup) Chain 3: Iteration: 10 / 100 [ 10%] (Warmup) Chain 3: Iteration: 20 / 100 [ 20%] (Warmup) Chain 3: Iteration: 30 / 100 [ 30%] (Warmup) Chain 3: Iteration: 40 / 100 [ 40%] (Warmup) Chain 3: Iteration: 50 / 100 [ 50%] (Warmup) Chain 3: Iteration: 51 / 100 [ 51%] (Sampling) Chain 3: Iteration: 60 / 100 [ 60%] (Sampling) Chain 3: Iteration: 70 / 100 [ 70%] (Sampling) Chain 3: Iteration: 80 / 100 [ 80%] (Sampling) Chain 3: Iteration: 90 / 100 [ 90%] (Sampling) Chain 3: Iteration: 100 / 100 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.391 seconds (Warm-up) Chain 3: 0.401 seconds (Sampling) Chain 3: 0.792 seconds (Total) Chain 3: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.000225 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 2.25 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: There aren't enough warmup iterations to fit the Chain 4: three stages of adaptation as currently configured. Chain 4: Reducing each adaptation stage to 15%/75%/10% of Chain 4: the given number of warmup iterations: Chain 4: init_buffer = 7 Chain 4: adapt_window = 38 Chain 4: term_buffer = 5 Chain 4: Chain 4: Iteration: 1 / 100 [ 1%] (Warmup) Chain 4: Iteration: 10 / 100 [ 10%] (Warmup) Chain 4: Iteration: 20 / 100 [ 20%] (Warmup) Chain 4: Iteration: 30 / 100 [ 30%] (Warmup) Chain 4: Iteration: 40 / 100 [ 40%] (Warmup) Chain 4: Iteration: 50 / 100 [ 50%] (Warmup) Chain 4: Iteration: 51 / 100 [ 51%] (Sampling) Chain 4: Iteration: 60 / 100 [ 60%] (Sampling) Chain 4: Iteration: 70 / 100 [ 70%] (Sampling) Chain 4: Iteration: 80 / 100 [ 80%] (Sampling) Chain 4: Iteration: 90 / 100 [ 90%] (Sampling) Chain 4: Iteration: 100 / 100 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.341 seconds (Warm-up) Chain 4: 0.379 seconds (Sampling) Chain 4: 0.72 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000858 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 8.58 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/gradient.hpp:52: runtime error: load of misaligned address 0x53100028492c for type 'const double', which requires 8 byte alignment 0x53100028492c: note: pointer points here 8d 7f 00 00 2e 90 6f 4d d6 ef c4 c0 00 00 00 00 00 00 00 00 dc 48 28 00 10 53 00 00 09 00 00 00 ^ #0 0x7f8da49854ac in void stan::math::gradient >(stan::model::model_functional const&, Eigen::Matrix const&, double&, Eigen::Matrix&) /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/gradient.hpp:52 #1 0x7f8da49861e0 in void stan::model::gradient(model_binomial_1par_namespace::model_binomial_1par const&, Eigen::Matrix const&, double&, Eigen::Matrix&, stan::callbacks::logger&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/model/gradient.hpp:27 #2 0x7f8da4986ea2 in stan::mcmc::base_hamiltonian, boost::random::linear_congruential_engine > >::update_potential_gradient(stan::mcmc::diag_e_point&, stan::callbacks::logger&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:63 #3 0x7f8da4bb22f6 in stan::mcmc::base_hamiltonian, boost::random::linear_congruential_engine > >::init(stan::mcmc::diag_e_point&, stan::callbacks::logger&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:49 #4 0x7f8da4bb22f6 in stan::mcmc::base_hmc, boost::random::linear_congruential_engine > >::init_stepsize(stan::callbacks::logger&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/mcmc/hmc/base_hmc.hpp:90 #5 0x7f8da4bbbd1e in void stan::services::util::run_adaptive_sampler, boost::random::linear_congruential_engine > >, model_binomial_1par_namespace::model_binomial_1par, boost::random::additive_combine_engine, boost::random::linear_congruential_engine > >(stan::mcmc::adapt_diag_e_nuts, boost::random::linear_congruential_engine > >&, model_binomial_1par_namespace::model_binomial_1par&, std::vector >&, int, int, int, int, bool, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, unsigned long, unsigned long) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57 #6 0x7f8da4bbbd1e in int stan::services::sample::hmc_nuts_diag_e_adapt(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, stan::io::var_context const&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp:101 #7 0x7f8da4c34ae1 in int stan::services::sample::hmc_nuts_diag_e_adapt(model_binomial_1par_namespace::model_binomial_1par&, stan::io::var_context const&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-dev/StanHeaders/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp:151 #8 0x7f8da4c34ae1 in command, boost::random::linear_congruential_engine > > /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:668 #9 0x7f8da4c3d02f in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-dev/rstan/include/rstan/stan_fit.hpp:1215 #10 0x7f8da3f4efff in Rcpp::CppMethod1, boost::random::linear_congruential_engine > >, SEXPREC*, SEXPREC*>::operator()(rstan::stan_fit, boost::random::linear_congruential_engine > >*, SEXPREC**) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/Module_generated_CppMethod.h:111 #11 0x7f8da4af0f17 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:234 #12 0x7f8de34039ef in CppMethod__invoke_notvoid(SEXPREC*) /tmp/RtmpUE7qAe/R.INSTALL3ac8014e7becc8/Rcpp/src/module.cpp:220 #13 0x57d5f0 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #14 0x690f54 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1265 #15 0x69a71b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3010 #16 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #17 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #18 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #19 0x64f604 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #20 0x64f604 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8112 #21 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #22 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #23 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #24 0x698a63 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2571 #25 0x7f8df58da967 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1151 #26 0x74cdb7 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1344 #27 0x665ab8 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8076 #28 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #29 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #32 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #34 0x4fda99 in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2763 #35 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #36 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #37 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #39 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #40 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #41 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #42 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #43 0x691c59 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:954 #44 0x69226f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5857 #45 0x6568fe in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7871 #46 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #47 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #50 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #52 0x69e347 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3582 #53 0x690968 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1237 #54 0x6a2cc7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3974 #55 0x64ecdf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8141 #56 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #57 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #58 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #59 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #60 0x69f323 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #61 0x69f323 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465 #62 0x4533e4 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #63 0x7400f7 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1409 #64 0x640389 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8161 #65 0x68f6b2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7524 #66 0x68ff2a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x695c8e in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x6980f8 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2311 #69 0x69053d in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x69053d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1285 #71 0x7147fe in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:262 #72 0x714e71 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314 #73 0x714fb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1216 #74 0x715002 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1223 #75 0x41c7d8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #76 0x7f8df5a2950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #77 0x7f8df5a295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #78 0x41f034 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41f034) (BuildId: b1905e069420b93b9c230582bf2d54e9c7273570) Chain 1: Iteration: 1 / 10 [ 10%] (Warmup) Chain 1: Iteration: 2 / 10 [ 20%] (Warmup) Chain 1: Iteration: 3 / 10 [ 30%] (Warmup) Chain 1: Iteration: 4 / 10 [ 40%] (Warmup) Chain 1: Iteration: 5 / 10 [ 50%] (Warmup) Chain 1: Iteration: 6 / 10 [ 60%] (Sampling) Chain 1: Iteration: 7 / 10 [ 70%] (Sampling) Chain 1: Iteration: 8 / 10 [ 80%] (Sampling) Chain 1: Iteration: 9 / 10 [ 90%] (Sampling) Chain 1: Iteration: 10 / 10 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.023 seconds (Warm-up) Chain 1: 0.032 seconds (Sampling) Chain 1: 0.055 seconds (Total) Chain 1: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.000678 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 6.78 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 10 [ 10%] (Warmup) Chain 2: Iteration: 2 / 10 [ 20%] (Warmup) Chain 2: Iteration: 3 / 10 [ 30%] (Warmup) Chain 2: Iteration: 4 / 10 [ 40%] (Warmup) Chain 2: Iteration: 5 / 10 [ 50%] (Warmup) Chain 2: Iteration: 6 / 10 [ 60%] (Sampling) Chain 2: Iteration: 7 / 10 [ 70%] (Sampling) Chain 2: Iteration: 8 / 10 [ 80%] (Sampling) Chain 2: Iteration: 9 / 10 [ 90%] (Sampling) Chain 2: Iteration: 10 / 10 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.016 seconds (Warm-up) Chain 2: 0.023 seconds (Sampling) Chain 2: 0.039 seconds (Total) Chain 2: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000668 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 6.68 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 10 [ 10%] (Warmup) Chain 3: Iteration: 2 / 10 [ 20%] (Warmup) Chain 3: Iteration: 3 / 10 [ 30%] (Warmup) Chain 3: Iteration: 4 / 10 [ 40%] (Warmup) Chain 3: Iteration: 5 / 10 [ 50%] (Warmup) Chain 3: Iteration: 6 / 10 [ 60%] (Sampling) Chain 3: Iteration: 7 / 10 [ 70%] (Sampling) Chain 3: Iteration: 8 / 10 [ 80%] (Sampling) Chain 3: Iteration: 9 / 10 [ 90%] (Sampling) Chain 3: Iteration: 10 / 10 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.017 seconds (Warm-up) Chain 3: 0.008 seconds (Sampling) Chain 3: 0.025 seconds (Total) Chain 3: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.000613 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 6.13 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 10 [ 10%] (Warmup) Chain 4: Iteration: 2 / 10 [ 20%] (Warmup) Chain 4: Iteration: 3 / 10 [ 30%] (Warmup) Chain 4: Iteration: 4 / 10 [ 40%] (Warmup) Chain 4: Iteration: 5 / 10 [ 50%] (Warmup) Chain 4: Iteration: 6 / 10 [ 60%] (Sampling) Chain 4: Iteration: 7 / 10 [ 70%] (Sampling) Chain 4: Iteration: 8 / 10 [ 80%] (Sampling) Chain 4: Iteration: 9 / 10 [ 90%] (Sampling) Chain 4: Iteration: 10 / 10 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.04 seconds (Warm-up) Chain 4: 0.017 seconds (Sampling) Chain 4: 0.057 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). [ FAIL 0 | WARN 0 | SKIP 20 | PASS 1059 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (20): 'test-add_integration.R:541:3', 'test-example_atrial_fibrillation.R:4:1', 'test-example_bcg_vaccine.R:4:1', 'test-example_blocker.R:4:1', 'test-example_diabetes.R:4:1', 'test-example_dietary_fat.R:4:1', 'test-example_hta_psoriasis.R:4:1', 'test-example_parkinsons.R:4:1', 'test-example_plaque_psoriasis.R:4:1', 'test-example_smoking.R:4:1', 'test-example_statins.R:4:1', 'test-example_thrombolytics.R:4:1', 'test-example_transfusion.R:4:1', 'test-marginal_effects.R:65:1', 'test-nma.R:299:3', 'test-nodesplit.R:264:3', 'test-plot_nma_data.R:2:1', 'test-posterior_ranks.R:99:1', 'test-predict.R:110:1', 'test-relative_effects.R:65:1' [ FAIL 0 | WARN 0 | SKIP 20 | PASS 1059 ] Deleting unused snapshots: • plot_nma_data/atrial-fibrillation-network-star.svg • plot_nma_data/atrial-fibrillation-network.svg • plot_nma_data/bcg-vaccine-network.svg • plot_nma_data/blocker-network.svg • plot_nma_data/diabetes-network.svg • plot_nma_data/dietary-fat-network.svg • plot_nma_data/duplicated-agd-arms-network.svg • plot_nma_data/duplicated-agd-contrasts-network.svg • plot_nma_data/duplicated-ipd-arms-network.svg • plot_nma_data/hta-psoriasis-network.svg • plot_nma_data/ndmm-network.svg • plot_nma_data/parkinsons-arm-network.svg • plot_nma_data/parkinsons-contrast-network.svg • plot_nma_data/parkinsons-mixed-network.svg • plot_nma_data/plaque-psoriasis-network.svg • plot_nma_data/smoking-network.svg • plot_nma_data/statins-network.svg • plot_nma_data/thrombolytics-dias-network.svg • plot_nma_data/thrombolytics-network.svg • plot_nma_data/transfusion-network.svg > > proc.time() user system elapsed 329.660 6.836 338.707