* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/msBP.Rcheck’
* using R Under development (unstable) (2025-01-08 r87545)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘msBP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘msBP’ version ‘1.4-1’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘msBP’ can be installed ... [29s/31s] OK
* used C compiler: ‘gcc-14 (GCC) 14.2.0’
* used C++ compiler: ‘g++-14 (GCC) 14.2.0’
* checking package directory ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘msBP-Ex.R’ failed
The error most likely occurred in:

> ### Name: msBP.compute.prob
> ### Title: Compute binary tree of probabilities
> ### Aliases: msBP.compute.prob
> 
> ### ** Examples
> 
> S <-structure(list( T = list(1/8,c(1/3,1/3), c(1/4,1/4,1/4,1/4), 
+ 	rep(1,8)), max.s=3), class  = "binaryTree")
> R <-structure(list( T = list(1/2,c(1/2,1/2), c(1/4,1/2,1/2,1/2), 
+ 	rep(1,8)), max.s=3), class  = "binaryTree")
> RS <-structure(list(S = S, R = R), class  = "msbpTree")
> probabilities <- msBP.compute.prob(RS)
wrapper.cpp:29:39: runtime error: load of misaligned address 0x000000000001 for type 'double', which requires 8 byte alignment
0x000000000001: note: pointer points here
<memory cannot be printed>
    #0 0x7f8ab874d069 in computeprob_C /data/gannet/ripley/R/packages/tests-gcc-SAN/msBP/src/wrapper.cpp:29
    #1 0x75bb04 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1986
    #2 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122
    #3 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505
    #4 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #5 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393
    #6 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306
    #7 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328
    #8 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280
    #9 0x85eb86 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3571
    #10 0x83b4c6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232
    #11 0x9c4e19 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265
    #12 0x9c4e19 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317
    #13 0x9c631b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219
    #14 0x9d0892 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226
    #15 0x4290cf in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29
    #16 0x7f8ac422950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c)
    #17 0x7f8ac42295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c)
    #18 0x429ab4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x429ab4) (BuildId: b25c18b29da9020de134f39d59f7dee05849d9e9)


 *** caught segfault ***
address 0x1, cause 'memory not mapped'

Traceback:
 1: msBP.compute.prob(RS)
An irrecoverable exception occurred. R is aborting now ...
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [65s/67s] OK
* DONE
Status: 1 ERROR