--- re-building ‘ldmppr_howto.Rmd’ using rmarkdown
self_correcting_model.cpp:975:40: runtime error: left shift of negative value -1
    #0 0x7be79f2e4bd4 in operator() /data/gannet/ripley/R/packages/tests-gcc-SAN/ldmppr/src/self_correcting_model.cpp:975
    #1 0x7be79f2e4bd4 in thin_st_fast(Rcpp::Matrix<14, Rcpp::PreserveStorage> const&, Rcpp::Vector<14, Rcpp::PreserveStorage> const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/ldmppr/src/self_correcting_model.cpp:1017
    #2 0x7be79f31817a in _ldmppr_thin_st_fast /data/gannet/ripley/R/packages/tests-gcc-SAN/ldmppr/src/RcppExports.cpp:259
    #3 0x000000750696 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:757
    #4 0x000000754e6a in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437
    #5 0x0000008cfbb2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132
    #6 0x0000008bcdfb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515
    #7 0x00000085d722 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #8 0x00000087346a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389
    #9 0x00000087745a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302
    #10 0x00000085ddc3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324
    #11 0x00000085ddc3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280
    #12 0x00000088bc0e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581
    #13 0x00000085e1e6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232
    #14 0x0000008931b1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955
    #15 0x0000008cfbb2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132
    #16 0x0000008bcdfb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515
    #17 0x00000085d722 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #18 0x000000924491 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976
    #19 0x00000085ed7c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187
    #20 0x000000895c73 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3998
    #21 0x000000a96456 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411
    #22 0x0000008dcdc1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152
    #23 0x0000008bcdfb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515
    #24 0x00000085d722 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #25 0x000000924491 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976
    #26 0x00000085ed7c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187
    #27 0x000000924491 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976
    #28 0x0000008a7cd1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956
    #29 0x0000008a7cd1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5849
    #30 0x0000008dfa2c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7862
    #31 0x0000008bcdfb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515
    #32 0x00000085d722 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #33 0x00000087346a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389
    #34 0x00000087745a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302
    #35 0x00000085ddc3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324
    #36 0x00000085ddc3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280
    #37 0x0000008931b1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955
    #38 0x0000008cfbb2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132
    #39 0x0000008bcdfb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515
    #40 0x00000085d722 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #41 0x00000087346a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389
    #42 0x00000087745a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302
    #43 0x00000085ddc3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324
    #44 0x00000085ddc3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280
    #45 0x00000087346a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389
    #46 0x00000087745a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302
    #47 0x0000008e46b5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324
    #48 0x0000008e46b5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8103
    #49 0x0000008bcdfb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515
    #50 0x00000085d722 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #51 0x00000087346a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389
    #52 0x00000087745a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302
    #53 0x00000085ddc3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324
    #54 0x00000085ddc3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280
    #55 0x000000a02a48 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264
    #56 0x000000a02a48 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317
    #57 0x000000a10daa in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235
    #58 0x000000a10e42 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242
    #59 0x00000041319f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29
    #60 0x7fe7b68115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #61 0x7fe7b68116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #62 0x000000413b84 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b84) (BuildId: 133ed0ef06931129bf67d773c34b2503f0a68013)

[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘ldmppr_howto.Rmd’