--- re-building ‘iglm.Rmd’ using rmarkdown /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:1413:54: runtime error: reference binding to null pointer of type 'const double' #0 0x7b68f0649c49 in arma::subview::colptr(unsigned long long) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:1413 #1 0x7b68f0649c49 in arma::subview_col::subview_col(arma::Mat const&, unsigned long long) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:3267 #2 0x7b68f04da747 in arma::Mat::col(unsigned long long) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:3450 #3 0x7b68f04da747 in mat_to_map(arma::Mat, int, bool, std::unordered_map, std::equal_to, std::allocator >, std::hash, std::equal_to, std::allocator, std::equal_to, std::allocator > > > >&, std::unordered_map, std::equal_to, std::allocator >, std::hash, std::equal_to, std::allocator, std::equal_to, std::allocator > > > >&) ../inst/include/iglm/helper_functions.h:101 #4 0x7b68f04f1acb in Network::Network(int, bool, arma::Mat) ../inst/include/iglm/network_class.h:35 #5 0x7b68f04f1acb in XZ_class::XZ_class(int, bool, arma::Mat, arma::Col, arma::Mat, arma::Mat, std::__cxx11::basic_string, std::allocator >, double) ../inst/include/iglm/xz_class.h:97 #6 0x7b68f04f1acb in XYZ_class::XYZ_class(int, bool, arma::Col, arma::Col, arma::Mat, arma::Mat, arma::Mat, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, double, double) ../inst/include/iglm/xyz_class.h:40 #7 0x7b68f04fd7f3 in xyz_count_global(arma::Mat, arma::Col, arma::Col, arma::Mat, arma::Mat, bool, std::vector, std::allocator >, std::allocator, std::allocator > > >, int, std::vector, std::allocator > >&, std::vector >&, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, double, double) /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm/src/xyz_sampling.cpp:224 #8 0x7b68f03cbc91 in _iglm_xyz_count_global /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm/src/RcppExports.cpp:43 #9 0x00000074b9f5 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008e26ca in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8664 #11 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #12 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #18 0x0000008a3de1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #19 0x0000008a3de1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #20 0x0000008dbb3c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #21 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #22 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #23 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #24 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #25 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #26 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #27 0x000000887d1e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3563 #28 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #29 0x00000086d7cb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #30 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #31 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #32 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #33 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #34 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #35 0x00000086d7cb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #36 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #37 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #38 0x00000086d7cb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #39 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #40 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #41 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #42 0x0000008e07c5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #43 0x0000008e07c5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085 #44 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #45 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #47 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #48 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #49 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #50 0x000000887d1e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3563 #51 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #52 0x00000088f2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #53 0x0000008cbcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #54 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #55 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #57 0x00000085a8dc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #58 0x000000891d83 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3980 #59 0x000000a92bb6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #60 0x0000008d8ed1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8134 #61 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #62 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #63 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #64 0x00000085a8dc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #65 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #66 0x0000008a3de1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #67 0x0000008a3de1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #68 0x0000008dbb3c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #69 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #70 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #71 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #72 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #73 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #74 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #75 0x00000088f2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #76 0x0000008cbcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #77 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #78 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #80 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #81 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #82 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #83 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #84 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #85 0x0000008e07c5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #86 0x0000008e07c5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085 #87 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #88 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #89 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #90 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #91 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #92 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #93 0x0000009ff648 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #94 0x0000009ff648 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #95 0x000000a04a7a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #96 0x000000a0ec92 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #97 0x00000041318f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #98 0x7f690f2115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #99 0x7f690f2116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #100 0x000000413b54 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b54) (BuildId: d72f18244a1aebdcb6b557766816e31e8f422f5c) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'double' #0 0x7b68f0649af1 in double& arma::access::rw(double const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/access.hpp:26 #1 0x7b68f0649af1 in arma::subview::colptr(unsigned long long) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:1413 #2 0x7b68f0649af1 in arma::subview_col::subview_col(arma::Mat const&, unsigned long long) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:3267 #3 0x7b68f04da747 in arma::Mat::col(unsigned long long) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:3450 #4 0x7b68f04da747 in mat_to_map(arma::Mat, int, bool, std::unordered_map, std::equal_to, std::allocator >, std::hash, std::equal_to, std::allocator, std::equal_to, std::allocator > > > >&, std::unordered_map, std::equal_to, std::allocator >, std::hash, std::equal_to, std::allocator, std::equal_to, std::allocator > > > >&) ../inst/include/iglm/helper_functions.h:101 #5 0x7b68f04f1acb in Network::Network(int, bool, arma::Mat) ../inst/include/iglm/network_class.h:35 #6 0x7b68f04f1acb in XZ_class::XZ_class(int, bool, arma::Mat, arma::Col, arma::Mat, arma::Mat, std::__cxx11::basic_string, std::allocator >, double) ../inst/include/iglm/xz_class.h:97 #7 0x7b68f04f1acb in XYZ_class::XYZ_class(int, bool, arma::Col, arma::Col, arma::Mat, arma::Mat, arma::Mat, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, double, double) ../inst/include/iglm/xyz_class.h:40 #8 0x7b68f04fd7f3 in xyz_count_global(arma::Mat, arma::Col, arma::Col, arma::Mat, arma::Mat, bool, std::vector, std::allocator >, std::allocator, std::allocator > > >, int, std::vector, std::allocator > >&, std::vector >&, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, double, double) /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm/src/xyz_sampling.cpp:224 #9 0x7b68f03cbc91 in _iglm_xyz_count_global /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm/src/RcppExports.cpp:43 #10 0x00000074b9f5 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008e26ca in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8664 #12 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #13 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #19 0x0000008a3de1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #20 0x0000008a3de1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #21 0x0000008dbb3c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #22 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #23 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #24 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #25 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #26 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #27 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #28 0x000000887d1e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3563 #29 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #30 0x00000086d7cb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #31 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #32 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #33 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #34 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #35 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #36 0x00000086d7cb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #37 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #38 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #39 0x00000086d7cb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #40 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #41 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #42 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #43 0x0000008e07c5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #44 0x0000008e07c5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085 #45 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #46 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #48 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #49 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #50 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #51 0x000000887d1e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3563 #52 0x000000859d46 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #53 0x00000088f2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #54 0x0000008cbcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #55 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #56 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #58 0x00000085a8dc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #59 0x000000891d83 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3980 #60 0x000000a92bb6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #61 0x0000008d8ed1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8134 #62 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #63 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #64 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #65 0x00000085a8dc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #66 0x0000009205a1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #67 0x0000008a3de1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #68 0x0000008a3de1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #69 0x0000008dbb3c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #70 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #71 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #73 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #74 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #75 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #76 0x00000088f2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #77 0x0000008cbcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #78 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #79 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #81 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #82 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #83 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #84 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #85 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #86 0x0000008e07c5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #87 0x0000008e07c5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085 #88 0x0000008b8f0b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #89 0x000000859282 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #90 0x00000086efca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #91 0x00000087308a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #92 0x000000859923 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #93 0x000000859923 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #94 0x0000009ff648 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #95 0x0000009ff648 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #96 0x000000a04a7a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #97 0x000000a0ec92 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #98 0x00000041318f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #99 0x7f690f2115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #100 0x7f690f2116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #101 0x000000413b54 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b54) (BuildId: d72f18244a1aebdcb6b557766816e31e8f422f5c) 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm.Rcheck/vign_test/iglm/vignettes/iglm_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4181 bytes Input file size = 5039 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3740 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3740 Output IDAT size = 3740 bytes (441 bytes decrease) Output file size = 3818 bytes (1221 bytes = 24.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm.Rcheck/vign_test/iglm/vignettes/iglm_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5725 bytes Input file size = 6583 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5072 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5053 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5053 Output IDAT size = 5053 bytes (672 bytes decrease) Output file size = 5131 bytes (1452 bytes = 22.06% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm.Rcheck/vign_test/iglm/vignettes/iglm_files/figure-html/unnamed-chunk-8-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6057 bytes Input file size = 6915 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5381 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5381 Output IDAT size = 5381 bytes (676 bytes decrease) Output file size = 5459 bytes (1456 bytes = 21.06% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm.Rcheck/vign_test/iglm/vignettes/iglm_files/figure-html/unnamed-chunk-8-3.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6072 bytes Input file size = 6930 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5378 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5378 Output IDAT size = 5378 bytes (694 bytes decrease) Output file size = 5456 bytes (1474 bytes = 21.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm.Rcheck/vign_test/iglm/vignettes/iglm_files/figure-html/unnamed-chunk-8-4.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25622 bytes Input file size = 25736 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20698 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20698 Output IDAT size = 20698 bytes (4924 bytes decrease) Output file size = 20776 bytes (4960 bytes = 19.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm.Rcheck/vign_test/iglm/vignettes/iglm_files/figure-html/unnamed-chunk-8-5.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10531 bytes Input file size = 10621 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7652 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7652 Output IDAT size = 7652 bytes (2879 bytes decrease) Output file size = 7730 bytes (2891 bytes = 27.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/iglm.Rcheck/vign_test/iglm/vignettes/iglm_files/figure-html/unnamed-chunk-8-6.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18584 bytes Input file size = 18686 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13757 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13757 Output IDAT size = 13757 bytes (4827 bytes decrease) Output file size = 13835 bytes (4851 bytes = 25.96% decrease) [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘iglm.Rmd’