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Type 'q()' to quit R. > pkgname <- "focus" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > library('focus') > > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') > cleanEx() > nameEx("detector_create") > ### * detector_create > > flush(stderr()); flush(stdout()) > > ### Name: detector_create > ### Title: Create a FOCuS changepoint detector > ### Aliases: detector_create > > ### ** Examples > > # Univariate detector > det <- detector_create(type = "univariate") > detector_update(det, 0.5) > detector_update(det, 1.2) > r <- get_statistics(det, family = "gaussian") > print(r) $stopping_time [1] 2 $changepoint [1] 1 $stat [1] 0.245 > > ## Online (sequential) example > # Generate data with a changepoint > set.seed(123) > Y <- c(rnorm(500, mean = 0), rnorm(500, mean = 1)) > det <- detector_create(type = "univariate") > stat_trace <- numeric(length(Y)) > threshold <- 20 > for (i in seq_along(Y)) { + detector_update(det, Y[i]) + r <- get_statistics(det, family = "gaussian") + stat_trace[i] <- r$stat + if (!is.null(r$stat) && r$stat > threshold) { + cat("Online detection at", i, "estimate tau =", r$changepoint, "\n") + plot(stat_trace[1:i], type = "l", ylab = "Test Statistic", xlab = "Time") + break + } + } Online detection at 527 estimate tau = 502 > > # Multivariate detector with projections > dim_indexes <- list(c(0,1), c(1,2), c(0,2)) # 0-based indices > det_mv <- detector_create(type = "multivariate", dim_indexes = dim_indexes) > detector_update(det_mv, c(0.5, 1.2, -0.3)) > > # Nonparametric detector > quants <- qnorm(c(0.25, 0.5, 0.75)) > det_np <- detector_create(type = "npfocus", quantiles = quants) > > # One-sided univariate detector > det_one_sided <- detector_create(type = "univariate_one_sided", side = "left") > > > > > cleanEx() > nameEx("detector_update") > ### * detector_update > > flush(stderr()); flush(stdout()) > > ### Name: detector_update > ### Title: Update detector with new observation(s) > ### Aliases: detector_update > > ### ** Examples > > # Univariate example > det <- detector_create(type = "univariate") > detector_update(det, 0.5) > detector_update(det, 1.2) > > # Multivariate example > det_mv <- detector_create(type = "multivariate") > detector_update(det_mv, c(0.5, 1.2, -0.3)) > > ## Online (sequential) example > # Generate data with a changepoint > set.seed(123) > Y <- c(rnorm(500, mean = 0), rnorm(500, mean = 1)) > det <- detector_create(type = "univariate") > stat_trace <- numeric(length(Y)) > threshold <- 20 > for (i in seq_along(Y)) { + detector_update(det, Y[i]) + r <- get_statistics(det, family = "gaussian") + stat_trace[i] <- r$stat + if (!is.null(r$stat) && r$stat > threshold) { + cat("Online detection at", i, "estimate tau =", r$changepoint, "\n") + plot(stat_trace[1:i], type = "l", ylab = "Test Statistic", xlab = "Time") + break + } + } Online detection at 527 estimate tau = 502 > > > > > > cleanEx() > nameEx("focus-package") > ### * focus-package > > flush(stderr()); flush(stdout()) > > ### Name: focus-package > ### Title: Online Changepoint Detection in Univariate and Multivariate Data > ### Streams > ### Aliases: focus-package focus > ### Keywords: package > > ### ** Examples > > > > > cleanEx() > nameEx("focus_offline") > ### * focus_offline > > flush(stderr()); flush(stdout()) > > ### Name: focus_offline > ### Title: Run FOCuS detector in offline batch mode > ### Aliases: focus_offline > > ### ** Examples > > # Univariate Gaussian detection > set.seed(123) > Y <- c(rnorm(100, mean = 0), rnorm(100, mean = 2)) > result <- focus_offline(Y, threshold = 10, type = "univariate", + family = "gaussian") > cat("Detection at time:", result$detection_time, "\n") Detection at time: 104 > cat("Changepoint at:", result$detected_changepoint, "\n") Changepoint at: 100 > > # Plot statistics > plot(result$stat, type = "l", ylab = "Test Statistic", xlab = "Time") > abline(h = result$threshold, col = "red", lty = 2) > if (!is.null(result$detection_time)) { + abline(v = result$detection_time, col = "blue", lty = 2) + } > > # Multivariate detection > Y_multi <- matrix(rnorm(200 * 3), ncol = 3) > Y_multi[101:200, ] <- Y_multi[101:200, ] + 1.5 # Add mean shift > result_multi <- focus_offline(Y_multi, threshold = 15, + type = "multivariate", + family = "gaussian") libqhull_r/qset_r.c:985:9: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7ba195008da0 in qh_setnew libqhull_r/qset_r.c:985 #1 0x7ba194edbbda in qh_initqhull_buffers libqhull_r/global_r.c:1544 #2 0x7ba194ec5f9a in qh_init_B libqhull_r/global_r.c:535 #3 0x7ba194e04fbb in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:329 #4 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #5 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #6 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #7 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #8 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #9 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #10 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #11 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #13 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #14 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #15 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #17 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #19 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #21 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #22 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #24 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:142:12: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7ba19500be5a in qh_setappend libqhull_r/qset_r.c:142 #1 0x7ba1950403b8 in qh_settemp libqhull_r/qset_r.c:1193 #2 0x7ba194e8d860 in qh_maxmin libqhull_r/geom2_r.c:1122 #3 0x7ba194ff84c5 in qh_initbuild libqhull_r/poly2_r.c:2151 #4 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:140:25: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7ba19500bd46 in qh_setappend libqhull_r/qset_r.c:140 #1 0x7ba194e8df07 in qh_maxmin libqhull_r/geom2_r.c:1154 #2 0x7ba194ff84c5 in qh_initbuild libqhull_r/poly2_r.c:2151 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:145:21: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba19500bcba in qh_setappend libqhull_r/qset_r.c:145 #1 0x7ba194e8df16 in qh_maxmin libqhull_r/geom2_r.c:1155 #2 0x7ba194ff84c5 in qh_initbuild libqhull_r/poly2_r.c:2151 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:1160:10: runtime error: index 7 out of bounds for type 'setelemT [1]' #0 0x7ba19503f90a in qh_setsize libqhull_r/qset_r.c:1160 #1 0x7ba194e9f750 in qh_maxsimplex libqhull_r/geom2_r.c:1242 #2 0x7ba194ff7092 in qh_initialvertices libqhull_r/poly2_r.c:2427 #3 0x7ba194ff8c74 in qh_initbuild libqhull_r/poly2_r.c:2178 #4 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:68:25: runtime error: index 7 out of bounds for type 'setelemT [1]' #0 0x7ba195022e52 in qh_setaddnth libqhull_r/qset_r.c:68 #1 0x7ba194ff712e in qh_initialvertices libqhull_r/poly2_r.c:2429 #2 0x7ba194ff8c74 in qh_initbuild libqhull_r/poly2_r.c:2178 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:79:21: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba195022dbf in qh_setaddnth libqhull_r/qset_r.c:79 #1 0x7ba194ff712e in qh_initialvertices libqhull_r/poly2_r.c:2429 #2 0x7ba194ff8c74 in qh_initbuild libqhull_r/poly2_r.c:2178 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:394:10: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7ba194fff528 in qh_setdellast libqhull_r/qset_r.c:394 #1 0x7ba195040c35 in qh_settemppop libqhull_r/qset_r.c:1267 #2 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1222 #3 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1217 #4 0x7ba194ff716e in qh_initialvertices libqhull_r/poly2_r.c:2430 #5 0x7ba194ff8c74 in qh_initbuild libqhull_r/poly2_r.c:2178 #6 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:401:24: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7ba194fff605 in qh_setdellast libqhull_r/qset_r.c:401 #1 0x7ba195040c35 in qh_settemppop libqhull_r/qset_r.c:1267 #2 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1222 #3 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1217 #4 0x7ba194ff716e in qh_initialvertices libqhull_r/poly2_r.c:2430 #5 0x7ba194ff8c74 in qh_initbuild libqhull_r/poly2_r.c:2178 #6 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:402:11: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7ba194fff6dd in qh_setdellast libqhull_r/qset_r.c:402 #1 0x7ba195040c35 in qh_settemppop libqhull_r/qset_r.c:1267 #2 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1222 #3 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1217 #4 0x7ba194ff716e in qh_initialvertices libqhull_r/poly2_r.c:2430 #5 0x7ba194ff8c74 in qh_initbuild libqhull_r/poly2_r.c:2178 #6 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:1021:12: runtime error: index 4 out of bounds for type 'setelemT [1]' #0 0x7ba19503e079 in qh_setnew_delnthsorted libqhull_r/qset_r.c:1021 #1 0x7ba194fdfa6f in qh_createsimplex libqhull_r/poly2_r.c:1500 #2 0x7ba194fe8e12 in qh_initialhull libqhull_r/poly2_r.c:2248 #3 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #4 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly2_r.c:1498:3: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194fe0430 in qh_createsimplex libqhull_r/poly2_r.c:1498 #1 0x7ba194fe8e12 in qh_initialhull libqhull_r/poly2_r.c:2248 #2 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly2_r.c:1513:9: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194fe016e in qh_createsimplex libqhull_r/poly2_r.c:1513 #1 0x7ba194fe8e12 in qh_initialhull libqhull_r/poly2_r.c:2248 #2 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:1325:9: runtime error: index 4 out of bounds for type 'setelemT [1]' #0 0x7ba19503fdac in qh_settruncate libqhull_r/qset_r.c:1325 #1 0x7ba194fdfbdc in qh_createsimplex libqhull_r/poly2_r.c:1515 #2 0x7ba194fe8e12 in qh_initialhull libqhull_r/poly2_r.c:2248 #3 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #4 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:1326:9: runtime error: index 4 out of bounds for type 'setelemT [1]' #0 0x7ba19503fe21 in qh_settruncate libqhull_r/qset_r.c:1326 #1 0x7ba194fdfbdc in qh_createsimplex libqhull_r/poly2_r.c:1515 #2 0x7ba194fe8e12 in qh_initialhull libqhull_r/poly2_r.c:2248 #3 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #4 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:242:3: runtime error: index 4 out of bounds for type 'setelemT [1]' #0 0x7ba1950236f9 in qh_setcheck libqhull_r/qset_r.c:242 #1 0x7ba194fcc5d6 in qh_checkfacet libqhull_r/poly2_r.c:765 #2 0x7ba194fda453 in qh_checkpolygon libqhull_r/poly2_r.c:1260 #3 0x7ba194fe99a3 in qh_initialhull libqhull_r/poly2_r.c:2324 #4 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #5 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:248:19: runtime error: index 4 out of bounds for type 'setelemT [1]' #0 0x7ba1950236bb in qh_setcheck libqhull_r/qset_r.c:248 #1 0x7ba194fcc5d6 in qh_checkfacet libqhull_r/poly2_r.c:765 #2 0x7ba194fda453 in qh_checkpolygon libqhull_r/poly2_r.c:1260 #3 0x7ba194fe99a3 in qh_initialhull libqhull_r/poly2_r.c:2324 #4 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #5 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly2_r.c:927:16: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194fcf2e9 in qh_checkfacet libqhull_r/poly2_r.c:927 #1 0x7ba194fda453 in qh_checkpolygon libqhull_r/poly2_r.c:1260 #2 0x7ba194fe99a3 in qh_initialhull libqhull_r/poly2_r.c:2324 #3 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #4 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:829:3: runtime error: index 4 out of bounds for type 'setelemT [1]' #0 0x7ba1950017e3 in qh_setindex libqhull_r/qset_r.c:829 #1 0x7ba194fcf34c in qh_checkfacet libqhull_r/poly2_r.c:928 #2 0x7ba194fda453 in qh_checkpolygon libqhull_r/poly2_r.c:1260 #3 0x7ba194fe99a3 in qh_initialhull libqhull_r/poly2_r.c:2324 #4 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #5 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:684:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba1950012ea in qh_setequal_skip libqhull_r/qset_r.c:684 #1 0x7ba194fcf3bf in qh_checkfacet libqhull_r/poly2_r.c:929 #2 0x7ba194fda453 in qh_checkpolygon libqhull_r/poly2_r.c:1260 #3 0x7ba194fe99a3 in qh_initialhull libqhull_r/poly2_r.c:2324 #4 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #5 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:685:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba1950012b3 in qh_setequal_skip libqhull_r/qset_r.c:685 #1 0x7ba194fcf3bf in qh_checkfacet libqhull_r/poly2_r.c:929 #2 0x7ba194fda453 in qh_checkpolygon libqhull_r/poly2_r.c:1260 #3 0x7ba194fe99a3 in qh_initialhull libqhull_r/poly2_r.c:2324 #4 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #5 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly2_r.c:576:7: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194fca429 in qh_checkconvex libqhull_r/poly2_r.c:576 #1 0x7ba194fe99e2 in qh_initialhull libqhull_r/poly2_r.c:2325 #2 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly2_r.c:583:17: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194fca68a in qh_checkconvex libqhull_r/poly2_r.c:583 #1 0x7ba194fe99e2 in qh_initialhull libqhull_r/poly2_r.c:2325 #2 0x7ba194ff8c98 in qh_initbuild libqhull_r/poly2_r.c:2179 #3 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #4 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #5 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #6 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #7 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #8 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #9 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #10 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #11 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #12 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #14 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #15 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #16 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #18 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #20 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #22 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #23 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/libqhull_r.c:1070:7: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7ba194f42cd0 in qh_partitionall libqhull_r/libqhull_r.c:1070 #1 0x7ba194ff8d0a in qh_initbuild libqhull_r/poly2_r.c:2180 #2 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #3 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #4 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #5 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #6 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #7 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #8 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #9 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #10 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #11 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #13 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #14 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #15 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #17 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #19 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #21 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #22 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #24 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/libqhull_r.c:1089:7: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194f42998 in qh_partitionall libqhull_r/libqhull_r.c:1089 #1 0x7ba194ff8d0a in qh_initbuild libqhull_r/poly2_r.c:2180 #2 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #3 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #4 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #5 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #6 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #7 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #8 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #9 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #10 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #11 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #13 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #14 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #15 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #17 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #19 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #21 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #22 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #24 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:396:24: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194fff63d in qh_setdellast libqhull_r/qset_r.c:396 #1 0x7ba195040c35 in qh_settemppop libqhull_r/qset_r.c:1267 #2 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1222 #3 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1217 #4 0x7ba194ff9312 in qh_initbuild libqhull_r/poly2_r.c:2222 #5 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:397:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194fff7a7 in qh_setdellast libqhull_r/qset_r.c:397 #1 0x7ba195040c35 in qh_settemppop libqhull_r/qset_r.c:1267 #2 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1222 #3 0x7ba195040f17 in qh_settempfree libqhull_r/qset_r.c:1217 #4 0x7ba194ff9312 in qh_initbuild libqhull_r/poly2_r.c:2222 #5 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/libqhull_r.c:948:5: runtime error: index 100 out of bounds for type 'setelemT [1]' #0 0x7ba194f3e840 in qh_nextfurthest libqhull_r/libqhull_r.c:948 #1 0x7ba194f327a6 in qh_buildhull libqhull_r/libqhull_r.c:619 #2 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #3 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #4 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #5 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #6 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #7 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #8 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #9 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #10 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #11 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #13 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #14 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #15 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #17 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #19 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #21 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #22 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #24 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:750:9: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba195015bd2 in qh_makenew_simplicial libqhull_r/poly_r.c:750 #1 0x7ba194ffbd90 in qh_makenewfacets libqhull_r/poly2_r.c:2511 #2 0x7ba194f2ef59 in qh_buildcone libqhull_r/libqhull_r.c:409 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:953:19: runtime error: index 4 out of bounds for type 'setelemT [1]' #0 0x7ba19501adf5 in qh_matchnewfacets libqhull_r/poly_r.c:953 #1 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #2 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #3 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #4 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:954:22: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba195019c9a in qh_matchnewfacets libqhull_r/poly_r.c:954 #1 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #2 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #3 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #4 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:1378:9: runtime error: index 41 out of bounds for type 'setelemT [1]' #0 0x7ba19504020a in qh_setzero libqhull_r/qset_r.c:1378 #1 0x7ba194ff62c6 in qh_newhashtable libqhull_r/poly2_r.c:2915 #2 0x7ba195019e4b in qh_matchnewfacets libqhull_r/poly_r.c:958 #3 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #4 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:826:22: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba1950191f5 in qh_matchneighbor libqhull_r/poly_r.c:826 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:437:17: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba19500709f in qh_gethash libqhull_r/poly_r.c:437 #1 0x7ba19501689d in qh_matchneighbor libqhull_r/poly_r.c:825 #2 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #3 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #4 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:830:27: runtime error: index 19 out of bounds for type 'setelemT [1]' #0 0x7ba1950190f3 in qh_matchneighbor libqhull_r/poly_r.c:830 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:889:5: runtime error: index 19 out of bounds for type 'setelemT [1]' #0 0x7ba195019389 in qh_matchneighbor libqhull_r/poly_r.c:889 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:1058:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba195005671 in qh_matchvertices libqhull_r/poly_r.c:1058 #1 0x7ba195016b8b in qh_matchneighbor libqhull_r/poly_r.c:837 #2 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #3 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #4 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:1059:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba1950056b5 in qh_matchvertices libqhull_r/poly_r.c:1059 #1 0x7ba195016b8b in qh_matchneighbor libqhull_r/poly_r.c:837 #2 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #3 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #4 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:1060:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba19500589f in qh_matchvertices libqhull_r/poly_r.c:1060 #1 0x7ba195016b8b in qh_matchneighbor libqhull_r/poly_r.c:837 #2 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #3 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #4 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:1070:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba19500504b in qh_matchvertices libqhull_r/poly_r.c:1070 #1 0x7ba195016b8b in qh_matchneighbor libqhull_r/poly_r.c:837 #2 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #3 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #4 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:838:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba1950196d4 in qh_matchneighbor libqhull_r/poly_r.c:838 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:838:52: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7ba1950198dd in qh_matchneighbor libqhull_r/poly_r.c:838 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:846:19: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7ba195019523 in qh_matchneighbor libqhull_r/poly_r.c:846 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:848:9: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7ba195018a26 in qh_matchneighbor libqhull_r/poly_r.c:848 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:849:9: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba195018b3d in qh_matchneighbor libqhull_r/poly_r.c:849 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/poly_r.c:830:27: runtime error: index 34 out of bounds for type 'setelemT [1]' #0 0x7ba1950181c7 in qh_matchneighbor libqhull_r/poly_r.c:830 #1 0x7ba195019fd8 in qh_matchnewfacets libqhull_r/poly_r.c:969 #2 0x7ba194f2f163 in qh_buildcone libqhull_r/libqhull_r.c:428 #3 0x7ba194f2fc8a in qh_addpoint libqhull_r/libqhull_r.c:216 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/merge_r.c:810:5: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194f624fc in qh_checkzero libqhull_r/merge_r.c:810 #1 0x7ba194f56410 in qh_premerge libqhull_r/merge_r.c:78 #2 0x7ba194f30906 in qh_addpoint libqhull_r/libqhull_r.c:248 #3 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #4 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/merge_r.c:815:15: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194f62641 in qh_checkzero libqhull_r/merge_r.c:815 #1 0x7ba194f56410 in qh_premerge libqhull_r/merge_r.c:78 #2 0x7ba194f30906 in qh_addpoint libqhull_r/libqhull_r.c:248 #3 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #4 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #5 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #6 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #7 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #8 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #9 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #10 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #11 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #12 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #13 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #15 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #16 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #17 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #19 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #21 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #23 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #24 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #26 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/libqhull_r.c:1094:13: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194f42e85 in qh_partitionall libqhull_r/libqhull_r.c:1094 #1 0x7ba194ff8d0a in qh_initbuild libqhull_r/poly2_r.c:2180 #2 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #3 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #4 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #5 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #6 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #7 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #8 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #9 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #10 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #11 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #13 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #14 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #15 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #17 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #19 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #21 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #22 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #24 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:941:28: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7ba19500232c in qh_setlast libqhull_r/qset_r.c:941 #1 0x7ba194f3f75e in qh_partitionpoint libqhull_r/libqhull_r.c:1356 #2 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #3 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:945:14: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba195002377 in qh_setlast libqhull_r/qset_r.c:945 #1 0x7ba194f3f75e in qh_partitionpoint libqhull_r/libqhull_r.c:1356 #2 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #3 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:943:14: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7ba195002461 in qh_setlast libqhull_r/qset_r.c:943 #1 0x7ba194f3f75e in qh_partitionpoint libqhull_r/libqhull_r.c:1356 #2 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #3 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:214:27: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7ba19500dfac in qh_setappend2ndlast libqhull_r/qset_r.c:214 #1 0x7ba194f40324 in qh_partitionpoint libqhull_r/libqhull_r.c:1379 #2 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #3 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:871:5: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7ba19500b149 in qh_setlarger libqhull_r/qset_r.c:871 #1 0x7ba19500daed in qh_setappend2ndlast libqhull_r/qset_r.c:215 #2 0x7ba194f40324 in qh_partitionpoint libqhull_r/libqhull_r.c:1379 #3 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #4 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:879:12: runtime error: index 7 out of bounds for type 'setelemT [1]' #0 0x7ba19500b3a4 in qh_setlarger libqhull_r/qset_r.c:879 #1 0x7ba19500daed in qh_setappend2ndlast libqhull_r/qset_r.c:215 #2 0x7ba194f40324 in qh_partitionpoint libqhull_r/libqhull_r.c:1379 #3 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #4 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #5 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #6 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #7 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #8 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #9 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #10 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #11 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #12 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #13 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #14 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #21 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #23 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #25 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #26 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #29 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:216:16: runtime error: index 7 out of bounds for type 'setelemT [1]' #0 0x7ba19500e07c in qh_setappend2ndlast libqhull_r/qset_r.c:216 #1 0x7ba194f40324 in qh_partitionpoint libqhull_r/libqhull_r.c:1379 #2 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #3 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/qset_r.c:219:23: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7ba19500ddcf in qh_setappend2ndlast libqhull_r/qset_r.c:219 #1 0x7ba194f40324 in qh_partitionpoint libqhull_r/libqhull_r.c:1379 #2 0x7ba194f47060 in qh_partitionvisible libqhull_r/libqhull_r.c:1480 #3 0x7ba194f2ff74 in qh_addpoint libqhull_r/libqhull_r.c:263 #4 0x7ba194f32793 in qh_buildhull libqhull_r/libqhull_r.c:625 #5 0x7ba194f34d97 in qh_qhull libqhull_r/libqhull_r.c:68 #6 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #7 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #8 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #9 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #10 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #11 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #12 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #13 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #14 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #16 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #17 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #18 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #20 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #22 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #24 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #25 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #27 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #28 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) libqhull_r/libqhull_r.c:1122:5: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7ba194f42d02 in qh_partitionall libqhull_r/libqhull_r.c:1122 #1 0x7ba194ff8d0a in qh_initbuild libqhull_r/poly2_r.c:2180 #2 0x7ba194f34d8f in qh_qhull libqhull_r/libqhull_r.c:67 #3 0x7ba194e04ff4 in orgQhull::Qhull::runQhull(char const*, int, int, double const*, char const*) libqhullcpp/Qhull.cpp:330 #4 0x7ba194cfede8 in changepoint::MultivariateInfo::prune(std::vector > const&) const /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/MultivariateInfo.h:218 #5 0x7ba194cec6ad in changepoint::CandidateListInfo::update(std::vector > const&) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/Info.h:73 #6 0x7ba194d3f457 in focus_offline(SEXPREC*, SEXPREC*, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, int, int, std::__cxx11::basic_string, std::allocator >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >, Rcpp::Nullable >) /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/focus_rcpp_module.cpp:972 #7 0x7ba194c52e6e in _focus_focus_offline /data/gannet/ripley/R/packages/tests-gcc-SAN/focus/src/RcppExports.cpp:134 #8 0x000000750645 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:813 #9 0x0000008edcc2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #10 0x0000008c43f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #11 0x000000863432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x00000087b9ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #13 0x00000087f9aa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #14 0x000000863ae3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #15 0x000000863ae3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x000000895e4e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #17 0x000000863f06 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x000000a09948 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #19 0x000000a09948 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x000000a18c3a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #21 0x000000a18cd2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #22 0x000000412fff in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7fa1a8212574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #24 0x7fa1a8212627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #25 0x0000004139e4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x4139e4) (BuildId: efa2ed5c61dc8fae0bc25133fc67d4e82ebdcc35) > > # Poisson detection > Y_poisson <- c(rpois(100, lambda = 2), rpois(100, lambda = 5)) > result_poisson <- focus_offline(Y_poisson, threshold = 10, + type = "univariate", + family = "poisson") > > > > > cleanEx() > nameEx("generate_projection_indexes") > ### * generate_projection_indexes > > flush(stderr()); flush(stdout()) > > ### Name: generate_projection_indexes > ### Title: Generate projection index sets > ### Aliases: generate_projection_indexes > > ### ** Examples > > > > > > cleanEx() > nameEx("get_statistics") > ### * get_statistics > > flush(stderr()); flush(stdout()) > > ### Name: get_statistics > ### Title: Compute current changepoint statistics > ### Aliases: get_statistics > > ### ** Examples > > > ## Online (sequential) example > # Generate data with a changepoint > set.seed(123) > Y <- c(rnorm(500, mean = 0), rnorm(500, mean = 1)) > det <- detector_create(type = "univariate") > stat_trace <- numeric(length(Y)) > threshold <- 20 > for (i in seq_along(Y)) { + detector_update(det, Y[i]) + r <- get_statistics(det, family = "gaussian") + stat_trace[i] <- r$stat + if (!is.null(r$stat) && r$stat > threshold) { + cat("Online detection at", i, "estimate tau =", r$changepoint, "\n") + plot(stat_trace[1:i], type = "l", ylab = "Test Statistic", xlab = "Time") + break + } + } Online detection at 527 estimate tau = 502 > > ## Note that multiple models can be tested simultaneously on the same detector > # as the statistics is independent of the detector state. > # For example, testing both Gaussian and Poisson costs > set.seed(2024) > # Generate Poisson count data with a rate change > Y_counts <- c(rpois(500, lambda = 10), rpois(500, lambda = 15)) > # Compute full trajectories for comparison > det2 <- detector_create(type = "univariate") > stat_gaussian <- numeric(length(Y_counts)) > stat_poisson <- numeric(length(Y_counts)) > > for (i in seq_along(Y_counts)) { + detector_update(det2, Y_counts[i]) + stat_gaussian[i] <- get_statistics(det2, family = "gaussian")$stat + stat_poisson[i] <- get_statistics(det2, family = "poisson", theta0 = 10)$stat + } > > # Plot comparison > oldpar <- par(mfrow = c(1, 2)) > plot(stat_gaussian, type = "l", main = "Gaussian Statistic on Poisson Data", + xlab = "Time", ylab = "Statistic", lwd = 2, col = "blue") > abline(v = 500, col = "green", lty = 3, lwd = 2) > > plot(stat_poisson, type = "l", main = "Poisson Statistic on Poisson Data", + xlab = "Time", ylab = "Statistic", lwd = 2, col = "red") > abline(v = 500, col = "green", lty = 3, lwd = 2) > par(oldpar) > > > > > > graphics::par(get("par.postscript", pos = 'CheckExEnv')) > ### *