* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/extracat.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘extracat/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘extracat’ version ‘1.7-6’ * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘extracat’ can be installed ... [98s/99s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking contents of ‘data’ directory ... OK * checking compiled code ... OK * checking examples ... ERROR Running examples in ‘extracat-Ex.R’ failed The error most likely occurred in: > ### Name: sortandcut > ### Title: Sort-and-Cut Reordering > ### Aliases: sortandcut > > ### ** Examples > > M <- arsim(12000,c(30,40),7,noise=0.3) > c1 <- cfluctile(M1<-optile(M, iter = 20)) > c2 <- cfluctile(M2<-sortandcut(M)) optile.c:1538:12: runtime error: index 2 out of bounds for type 'float [*]' #0 0x7f203425da97 in getclust /data/gannet/ripley/R/packages/tests-gcc-SAN/extracat/src/optile.c:1538 #1 0x574edb in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1252 #2 0x62393d in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7283 #3 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #4 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #5 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #6 0x62c4f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733 #7 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #8 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #9 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #10 0x645d93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743 #11 0x6522e1 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807 #12 0x646419 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695 #13 0x6475a7 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #14 0x648203 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4897 #15 0x648203 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4970 #16 0x622ef9 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6517 #17 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #18 0x6475a7 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #19 0x645ae0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:656 #20 0x617944 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6765 #21 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #22 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #23 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #24 0x62c4f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733 #25 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #26 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #27 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #28 0x645d93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743 #29 0x6522e1 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807 #30 0x646419 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695 #31 0x6bd93e in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260 #32 0x6bd93e in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #33 0x6bdff0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310 #34 0x6be124 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1086 #35 0x4180e8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #36 0x7f20446d911a in __libc_start_main (/lib64/libc.so.6+0x2311a) #37 0x41a819 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41a819) ================================================================= ==40262==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7ffde4972be8 at pc 0x7f203425d99f bp 0x7ffde4972a30 sp 0x7ffde4972a20 WRITE of size 4 at 0x7ffde4972be8 thread T0 #0 0x7f203425d99e in getclust /data/gannet/ripley/R/packages/tests-gcc-SAN/extracat/src/optile.c:1538 #1 0x574edb in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1252 #2 0x62393d in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7283 #3 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #4 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #5 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #6 0x62c4f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733 #7 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #8 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #9 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #10 0x645d93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743 #11 0x6522e1 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807 #12 0x646419 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695 #13 0x6475a7 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #14 0x648203 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4897 #15 0x648203 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4970 #16 0x622ef9 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6517 #17 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #18 0x6475a7 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516 #19 0x645ae0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:656 #20 0x617944 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6765 #21 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #22 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #23 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #24 0x62c4f3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733 #25 0x64588f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #26 0x64af95 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #27 0x64d588 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #28 0x645d93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743 #29 0x6522e1 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807 #30 0x646419 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695 #31 0x6bd93e in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260 #32 0x6bd93e in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #33 0x6bdff0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310 #34 0x6be124 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1086 #35 0x4180e8 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #36 0x7f20446d911a in __libc_start_main (/lib64/libc.so.6+0x2311a) #37 0x41a819 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41a819) Address 0x7ffde4972be8 is located in stack of thread T0 SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-gcc-SAN/extracat/src/optile.c:1538 in getclust Shadow bytes around the buggy address: 0x10003c926520: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10003c926530: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10003c926540: 00 00 00 00 00 00 00 00 ca ca ca ca 00 cb cb cb 0x10003c926550: cb cb cb cb 00 00 00 00 ca ca ca ca 00 04 cb cb 0x10003c926560: cb cb cb cb 00 00 00 00 ca ca ca ca 00 cb cb cb =>0x10003c926570: cb cb cb cb 00 00 00 00 ca ca ca ca 00[cb]cb cb 0x10003c926580: cb cb cb cb 00 00 00 00 ca ca ca ca 00 cb cb cb 0x10003c926590: cb cb cb cb 00 00 00 00 ca ca ca ca 00 04 cb cb 0x10003c9265a0: cb cb cb cb 00 00 00 00 00 00 00 00 00 00 00 00 0x10003c9265b0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10003c9265c0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==40262==ABORTING * DONE Status: 1 ERROR