--- re-building ‘bayesian-transmission.Rmd’ using rmarkdown lognormal/LinearAbxModel.h:14:12: runtime error: downcast of address 0x7c1c5d47ea80 which does not point to an object of type 'LinearAbxICP' 0x7c1c5d47ea80: note: object is of type 'lognormal::LogNormalAbxICP' 00 00 00 00 10 1c 8c 48 6c 7b 00 00 d8 03 01 00 00 00 00 00 02 00 00 00 be be be be 10 cb 54 5d ^~~~~~~~~~~~~~~~~~~~~~~ vptr for 'lognormal::LogNormalAbxICP' #0 0x7b6c473b0ed4 in lognormal::LinearAbxModel::getInColParams() const lognormal/LinearAbxModel.h:14 #1 0x7b6c473b0ed4 in lognormal::LinearAbxModel::LinearAbxModel(int, int, int, int) lognormal/lognormal_LinearAbxModel.cpp:7 #2 0x7b6c47a6f60f in newModel(Rcpp::Vector<19, Rcpp::PreserveStorage>, bool) /data/gannet/ripley/R/packages/tests-gcc-SAN/bayestransmission/src/runMCMC.cpp:36 #3 0x7b6c47a79067 in runMCMC(Rcpp::DataFrame_Impl, Rcpp::Vector<19, Rcpp::PreserveStorage>, unsigned int, unsigned int, bool, bool, bool) /data/gannet/ripley/R/packages/tests-gcc-SAN/bayestransmission/src/runMCMC.cpp:185 #4 0x7b6c47a63088 in _bayestransmission_runMCMC /data/gannet/ripley/R/packages/tests-gcc-SAN/bayestransmission/src/RcppExports.cpp:59 #5 0x00000074c360 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:775 #6 0x0000008e2d3a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8664 #7 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #8 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #9 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #10 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #11 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #12 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #13 0x00000088838e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3563 #14 0x00000085a3b6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #15 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #16 0x0000008a4451 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #17 0x0000008a4451 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #18 0x0000008dc1ac in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #19 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #20 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #22 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #23 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #24 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #25 0x00000088f931 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #26 0x0000008cc332 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #27 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #28 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x00000085af4c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #31 0x0000008923f3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3980 #32 0x000000a93476 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #33 0x0000008d9541 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8134 #34 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #35 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #37 0x00000085af4c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #38 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #39 0x0000008a4451 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #40 0x0000008a4451 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #41 0x0000008dc1ac in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #42 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #43 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #45 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #46 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #47 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #48 0x00000088f931 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #49 0x0000008cc332 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #50 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #51 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #53 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #54 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #55 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #56 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #57 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #58 0x0000008e0e35 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #59 0x0000008e0e35 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085 #60 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #61 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #63 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #64 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #65 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #66 0x0000009fff08 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #67 0x0000009fff08 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #68 0x000000a0533a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #69 0x000000a0f552 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #70 0x0000004131af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #71 0x7f6c60a115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #72 0x7f6c60a116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #73 0x000000413b74 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b74) (BuildId: 162da4155cf0b7e57a4e8bd0b5eda527e8633566) lognormal/lognormal_LogNormalModel.cpp:66:12: runtime error: downcast of address 0x7c1c5d47edf0 which does not point to an object of type 'LogNormalAbxICP' 0x7c1c5d47edf0: note: object is of type 'lognormal::LinearAbxICP' 00 00 00 00 f0 1d 8c 48 6c 7b 00 00 db 03 01 00 00 00 00 00 02 00 00 00 be be be be 90 cb 54 5d ^~~~~~~~~~~~~~~~~~~~~~~ vptr for 'lognormal::LinearAbxICP' #0 0x7b6c473ba68b in lognormal::LogNormalModel::getInColParams() const lognormal/lognormal_LogNormalModel.cpp:66 #1 0x7b6c47a79203 in runMCMC(Rcpp::DataFrame_Impl, Rcpp::Vector<19, Rcpp::PreserveStorage>, unsigned int, unsigned int, bool, bool, bool) /data/gannet/ripley/R/packages/tests-gcc-SAN/bayestransmission/src/runMCMC.cpp:189 #2 0x7b6c47a63088 in _bayestransmission_runMCMC /data/gannet/ripley/R/packages/tests-gcc-SAN/bayestransmission/src/RcppExports.cpp:59 #3 0x00000074c360 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:775 #4 0x0000008e2d3a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8664 #5 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #6 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #7 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #8 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #9 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #10 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #11 0x00000088838e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3563 #12 0x00000085a3b6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #13 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #14 0x0000008a4451 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #15 0x0000008a4451 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #16 0x0000008dc1ac in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #17 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #18 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #20 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #21 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #22 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x00000088f931 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #24 0x0000008cc332 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #25 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #26 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #28 0x00000085af4c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #29 0x0000008923f3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3980 #30 0x000000a93476 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #31 0x0000008d9541 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8134 #32 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #33 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #35 0x00000085af4c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #36 0x000000920c11 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #37 0x0000008a4451 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #38 0x0000008a4451 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #39 0x0000008dc1ac in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #40 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #41 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #42 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #43 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #44 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #45 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #46 0x00000088f931 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #47 0x0000008cc332 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #48 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #49 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #51 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #52 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #53 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #54 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #55 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #56 0x0000008e0e35 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #57 0x0000008e0e35 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085 #58 0x0000008b957b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #59 0x0000008598f2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x00000086f63a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #61 0x0000008736fa in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #62 0x000000859f93 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #63 0x000000859f93 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #64 0x0000009fff08 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #65 0x0000009fff08 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #66 0x000000a0533a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #67 0x000000a0f552 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #68 0x0000004131af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #69 0x7f6c60a115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #70 0x7f6c60a116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #71 0x000000413b74 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b74) (BuildId: 162da4155cf0b7e57a4e8bd0b5eda527e8633566) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/bayestransmission.Rcheck/vign_test/bayestransmission/vignettes/bayesian-transmission_files/figure-html/unnamed-chunk-17-1.png 960x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 82686 bytes Input file size = 83664 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 77068 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 64613 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 63592 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 63592 Output IDAT size = 63592 bytes (19094 bytes decrease) Output file size = 63670 bytes (19994 bytes = 23.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/bayestransmission.Rcheck/vign_test/bayestransmission/vignettes/bayesian-transmission_files/figure-html/unnamed-chunk-18-1.png 960x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49640 bytes Input file size = 49790 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47475 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43962 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43962 Output IDAT size = 43962 bytes (5678 bytes decrease) Output file size = 44040 bytes (5750 bytes = 11.55% decrease) [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘bayesian-transmission.Rmd’