--- re-building ‘adlaplace.Rmd’ using rmarkdown /usr/include/c++/16/bits/move.h:238:11: runtime error: load of value 190, which is not a valid value for type 'bool' #0 0x7bdfede1ca8a in CppAD::ADFun::swap(CppAD::ADFun&) [clone .cold] (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x1ca8a) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #1 0x7bdfedebfe83 in AdTape::AdTape(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0xbfe83) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #2 0x7bdfee076d7d in adlaplace_make_ad_shard(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x276d7d) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #3 0x7bdfee1f72a9 in packs_to_ad_fun(std::vector >&&, unsigned long, unsigned long, ad_shard* (*)(AdTape&&)) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x3f72a9) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #4 0x7bdfee21f150 in get_ad_pack_raw_obs_h(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, std::__cxx11::basic_string, std::allocator > const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x41f150) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #5 0x7bdfede68498 in get_ad_pack_raw_obs(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x68498) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #6 0x7bdfede54f70 in _adlaplace_get_ad_pack_raw_obs (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x54f70) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #7 0x00000075eaea in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x000000902e27 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #13 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #14 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #15 0x0000008adb3e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #16 0x000000878be6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #17 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #18 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #19 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #20 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #23 0x0000008b8a03 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #24 0x000000abdd91 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #25 0x0000008f903c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #26 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x0000008c242f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #32 0x0000008c242f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #33 0x0000008fc6c4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #34 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #35 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #38 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #40 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #41 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #42 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #43 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #46 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #48 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #50 0x0000008969db in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x000000901237 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8121 #52 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #53 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #56 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #58 0x000000a23af8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #59 0x000000a23af8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #60 0x000000a417ca in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #61 0x000000a41862 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #62 0x00000041236f in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #63 0x7fe00340a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #64 0x7fe00340a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #65 0x000000412d34 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412d34) (BuildId: 3fb2494ff6ab9a90c047428081e3f8f08e33a690) [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. --- finished re-building ‘adlaplace.Rmd’ --- re-building ‘bacteria.Rmd’ using rmarkdown /usr/include/c++/16/bits/move.h:238:11: runtime error: load of value 190, which is not a valid value for type 'bool' #0 0x7becd741ca8a in CppAD::ADFun::swap(CppAD::ADFun&) [clone .cold] (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x1ca8a) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #1 0x7becd74bfe83 in AdTape::AdTape(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0xbfe83) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #2 0x7becd7676d7d in adlaplace_make_ad_shard(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x276d7d) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #3 0x7becd77f72a9 in packs_to_ad_fun(std::vector >&&, unsigned long, unsigned long, ad_shard* (*)(AdTape&&)) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x3f72a9) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #4 0x7becd781f150 in get_ad_pack_raw_obs_h(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, std::__cxx11::basic_string, std::allocator > const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x41f150) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #5 0x7becd7468498 in get_ad_pack_raw_obs(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x68498) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #6 0x7becd7454f70 in _adlaplace_get_ad_pack_raw_obs (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x54f70) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #7 0x00000075eaea in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x000000902e27 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000899531 in R_execMethod /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2567 #13 0x7fece9960739 in R_dispatchGeneric /data/localhost/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1153 #14 0x000000ad6dfe in do_standardGeneric /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:1348 #15 0x000000904559 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8085 #16 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #17 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #20 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #22 0x0000008adb3e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #23 0x000000878be6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #24 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #25 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x0000008b8a03 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #31 0x000000abdd91 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #32 0x0000008f903c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #33 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #34 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #37 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #38 0x0000008c242f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #39 0x0000008c242f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #40 0x0000008fc6c4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #41 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #42 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #45 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #47 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #48 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #49 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #50 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #53 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #55 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #57 0x0000008969db in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x000000901237 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8121 #59 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #60 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #63 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #65 0x000000a23af8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #66 0x000000a23af8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #67 0x000000a417ca in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #68 0x000000a41862 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #69 0x00000041236f in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #70 0x7fececa0a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #71 0x7fececa0a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #72 0x000000412d34 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412d34) (BuildId: 3fb2494ff6ab9a90c047428081e3f8f08e33a690) [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. --- finished re-building ‘bacteria.Rmd’ --- re-building ‘casecrossover.Rmd’ using rmarkdown /usr/include/c++/16/bits/move.h:238:11: runtime error: load of value 190, which is not a valid value for type 'bool' #0 0x7b4536a1ca8a in CppAD::ADFun::swap(CppAD::ADFun&) [clone .cold] (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x1ca8a) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #1 0x7b4536abfe83 in AdTape::AdTape(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0xbfe83) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #2 0x7b4536c76d7d in adlaplace_make_ad_shard(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x276d7d) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #3 0x7b4536df72a9 in packs_to_ad_fun(std::vector >&&, unsigned long, unsigned long, ad_shard* (*)(AdTape&&)) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x3f72a9) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #4 0x7b4536e1f150 in get_ad_pack_raw_obs_h(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, std::__cxx11::basic_string, std::allocator > const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x41f150) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #5 0x7b4536a68498 in get_ad_pack_raw_obs(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x68498) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #6 0x7b4536a54f70 in _adlaplace_get_ad_pack_raw_obs (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x54f70) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #7 0x00000075eaea in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x000000902e27 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000899531 in R_execMethod /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2567 #13 0x7f4549123739 in R_dispatchGeneric /data/localhost/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1153 #14 0x000000ad6dfe in do_standardGeneric /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:1348 #15 0x000000904559 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8085 #16 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #17 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #20 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #22 0x0000008adb3e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #23 0x000000878be6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #24 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #25 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x0000008b8a03 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #31 0x000000abdd91 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #32 0x0000008f903c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #33 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #34 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #37 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #38 0x0000008c242f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #39 0x0000008c242f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #40 0x0000008fc6c4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #41 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #42 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #45 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #47 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #48 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #49 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #50 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #53 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #55 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #57 0x0000008969db in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x000000901237 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8121 #59 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #60 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #63 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #65 0x000000a23af8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #66 0x000000a23af8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #67 0x000000a417ca in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #68 0x000000a41862 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #69 0x00000041236f in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #70 0x7f454c00a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #71 0x7f454c00a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #72 0x000000412d34 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412d34) (BuildId: 3fb2494ff6ab9a90c047428081e3f8f08e33a690) [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. --- finished re-building ‘casecrossover.Rmd’ --- re-building ‘casecrossover_amip.Rmd’ using rmarkdown /usr/include/c++/16/bits/move.h:238:11: runtime error: load of value 190, which is not a valid value for type 'bool' #0 0x7bfba6c1ca8a in CppAD::ADFun::swap(CppAD::ADFun&) [clone .cold] (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x1ca8a) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #1 0x7bfba6cbfe83 in AdTape::AdTape(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0xbfe83) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #2 0x7bfba6e76d7d in adlaplace_make_ad_shard(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x276d7d) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #3 0x7bfba6ff72a9 in packs_to_ad_fun(std::vector >&&, unsigned long, unsigned long, ad_shard* (*)(AdTape&&)) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x3f72a9) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #4 0x7bfba701f150 in get_ad_pack_raw_obs_h(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, std::__cxx11::basic_string, std::allocator > const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x41f150) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #5 0x7bfba6c68498 in get_ad_pack_raw_obs(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x68498) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #6 0x7bfba6c54f70 in _adlaplace_get_ad_pack_raw_obs (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x54f70) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #7 0x00000075eaea in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x000000902e27 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000899531 in R_execMethod /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2567 #13 0x7ffbb9160739 in R_dispatchGeneric /data/localhost/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1153 #14 0x000000ad6dfe in do_standardGeneric /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:1348 #15 0x000000904559 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8085 #16 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #17 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #20 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #22 0x0000008adb3e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #23 0x000000878be6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #24 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #25 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x0000008b8a03 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #31 0x000000abdd91 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #32 0x0000008f903c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #33 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #34 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #37 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #38 0x0000008c242f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #39 0x0000008c242f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #40 0x0000008fc6c4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #41 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #42 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #45 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #47 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #48 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #49 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #50 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #53 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #55 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #57 0x0000008969db in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x000000901237 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8121 #59 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #60 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #63 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #65 0x000000a23af8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #66 0x000000a23af8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #67 0x000000a417ca in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #68 0x000000a41862 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #69 0x00000041236f in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #70 0x7ffbbc20a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #71 0x7ffbbc20a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #72 0x000000412d34 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412d34) (BuildId: 3fb2494ff6ab9a90c047428081e3f8f08e33a690) [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. --- finished re-building ‘casecrossover_amip.Rmd’ --- re-building ‘dirichlet_multinom.Rmd’ using rmarkdown [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. --- finished re-building ‘dirichlet_multinom.Rmd’ --- re-building ‘gamm.Rmd’ using rmarkdown /usr/include/c++/16/bits/move.h:238:11: runtime error: load of value 190, which is not a valid value for type 'bool' #0 0x7b5c75c1ca8a in CppAD::ADFun::swap(CppAD::ADFun&) [clone .cold] (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x1ca8a) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #1 0x7b5c75cbfe83 in AdTape::AdTape(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0xbfe83) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #2 0x7b5c75e76d7d in adlaplace_make_ad_shard(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x276d7d) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #3 0x7b5c75ff72a9 in packs_to_ad_fun(std::vector >&&, unsigned long, unsigned long, ad_shard* (*)(AdTape&&)) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x3f72a9) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #4 0x7b5c7601f150 in get_ad_pack_raw_obs_h(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, std::__cxx11::basic_string, std::allocator > const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x41f150) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #5 0x7b5c75c68498 in get_ad_pack_raw_obs(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x68498) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #6 0x7b5c75c54f70 in _adlaplace_get_ad_pack_raw_obs (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x54f70) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #7 0x00000075eaea in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x000000902e27 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x000000899531 in R_execMethod /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2567 #13 0x7f5c88196739 in R_dispatchGeneric /data/localhost/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1153 #14 0x000000ad6dfe in do_standardGeneric /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:1348 #15 0x000000904559 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8085 #16 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #17 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #19 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #20 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #21 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #22 0x0000008adb3e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #23 0x000000878be6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #24 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #25 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x0000008b8a03 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #31 0x000000abdd91 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #32 0x0000008f903c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #33 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #34 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #35 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #36 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #37 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #38 0x0000008c242f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #39 0x0000008c242f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #40 0x0000008fc6c4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #41 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #42 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #43 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #44 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #45 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #46 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #47 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #48 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #49 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #50 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #51 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #52 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #53 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #54 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #55 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #56 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #57 0x0000008969db in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #58 0x000000901237 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8121 #59 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #60 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #62 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #63 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #64 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #65 0x000000a23af8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #66 0x000000a23af8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #67 0x000000a417ca in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #68 0x000000a41862 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #69 0x00000041236f in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #70 0x7f5c8b20a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #71 0x7f5c8b20a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #72 0x000000412d34 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412d34) (BuildId: 3fb2494ff6ab9a90c047428081e3f8f08e33a690) [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. --- finished re-building ‘gamm.Rmd’ --- re-building ‘germany.Rmd’ using rmarkdown /usr/include/c++/16/bits/move.h:238:11: runtime error: load of value 190, which is not a valid value for type 'bool' #0 0x7b1ba9e1ca8a in CppAD::ADFun::swap(CppAD::ADFun&) [clone .cold] (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x1ca8a) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #1 0x7b1ba9ebfe83 in AdTape::AdTape(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0xbfe83) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #2 0x7b1baa076d7d in adlaplace_make_ad_shard(AdTape&&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x276d7d) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #3 0x7b1baa1f72a9 in packs_to_ad_fun(std::vector >&&, unsigned long, unsigned long, ad_shard* (*)(AdTape&&)) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x3f72a9) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #4 0x7b1baa21f150 in get_ad_pack_raw_obs_h(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, std::__cxx11::basic_string, std::allocator > const&) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x41f150) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #5 0x7b1ba9e68498 in get_ad_pack_raw_obs(SEXPREC*, Rcpp::Vector<19, Rcpp::PreserveStorage>, std::__cxx11::basic_string, std::allocator >) (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x68498) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #6 0x7b1ba9e54f70 in _adlaplace_get_ad_pack_raw_obs (/data/localhost/ripley/R/packages/tests-gcc-SAN/adlaplace.Rcheck/adlaplace/libs/adlaplace.so+0x54f70) (BuildId: d203d89d65f251caf962d2770bafefe647142e70) #7 0x00000075eaea in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:760 #8 0x000000902e27 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704 #9 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #10 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #11 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #12 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #13 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #14 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #15 0x0000008adb3e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #16 0x000000878be6 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #17 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #18 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #19 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #20 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #22 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #23 0x0000008b8a03 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #24 0x000000abdd91 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #25 0x0000008f903c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #26 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x00000087977c in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x00000094620a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x0000008c242f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #32 0x0000008c242f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #33 0x0000008fc6c4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #34 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #35 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #37 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #38 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #39 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #40 0x0000008b5ab9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #41 0x0000008ef2cb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #42 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #43 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #46 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #48 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #49 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #50 0x0000008969db in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #51 0x000000901237 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8121 #52 0x0000008da1db in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #53 0x00000087810a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x0000008914fa in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #55 0x0000008951fd in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #56 0x0000008787b8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #57 0x0000008787b8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #58 0x000000a23af8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #59 0x000000a23af8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #60 0x000000a417ca in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #61 0x000000a41862 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #62 0x00000041236f in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #63 0x7f1bbf40a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #64 0x7f1bbf40a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c) #65 0x000000412d34 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412d34) (BuildId: 3fb2494ff6ab9a90c047428081e3f8f08e33a690) [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. --- finished re-building ‘germany.Rmd’