R Under development (unstable) (2026-06-09 r90126) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > pkgname <- "accelEE" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > library('accelEE') > > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') > cleanEx() > nameEx("accelEE-function") > ### * accelEE-function > > flush(stderr()); flush(stdout()) > > ### Name: accelEE-function > ### Title: Predict energy expenditure for accelerometry data > ### Aliases: accelEE-function accelEE wrap_2RM crouter15 hildebrand_linear > ### hildebrand_nonlinear montoye sojourn staudenmayer > > ### ** Examples > > > #### Below, note the variations throughout the examples, > #### showing different ways you can customize the output > > > > ## Raw acceleration examples: > > if (isTRUE(requireNamespace("read.gt3x", quietly = TRUE))) { + + f <- system.file("extdata/TAS1H30182785_2019-09-17.gt3x", package = "read.gt3x") + d <- stats::setNames( + read.gt3x::read.gt3x(f, asDataFrame = TRUE, imputeZeroes = TRUE), + c("Timestamp", "Accelerometer_X", "Accelerometer_Y", "Accelerometer_Z") + )[1:30000, ] + + utils::head( + accelEE( + d, "Hibbing 2018", algorithm = 1, + site = c("Left Wrist", "Right Wrist"), + warn_high_low = FALSE, shrink_output = FALSE + ) + ) + + utils::head( + accelEE( + d, c("Hildebrand Linear", "Hildebrand Non-Linear"), age = "adult", + monitor = "ActiGraph", location = "Wrist", warn_high_low = FALSE, + ee_vars = c("METs", "kcal"), output_epoch = "60 sec" + ) + ) + + accelEE( + d, c( + "Montoye 2017", "Staudenmayer Linear", + "Staudenmayer Random Forest" + ), side = "left", ee_vars = "VO2", combine = FALSE + ) + + } nnet.c:98:16: runtime error: load of misaligned address 0x000000000001 for type 'int', which requires 4 byte alignment 0x000000000001: note: pointer points here #0 0x7be617ca1b2b in VR_set_net /tmp/Rtmp7S6JmR/R.INSTALL18a6d816cdfcd1/nnet/src/nnet.c:98 #1 0x0000007777bc in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1986 #2 0x0000008d7a82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #3 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #4 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #5 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #6 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #7 0x000000aa0486 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #8 0x000000aa0486 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #9 0x000000aa42c0 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #10 0x000000aa6113 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:509 #11 0x000000aa6e66 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #12 0x0000008e4c91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #13 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #14 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #17 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #19 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #20 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #21 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #22 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #23 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #24 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #26 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #27 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #28 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #29 0x7be617c666f1 in r_eval rlang/eval.h:12 #30 0x7be617c666f1 in rlang_eval_tidy internal/eval-tidy.c:548 #31 0x7be61723228c in dplyr_mask_eval_all_mutate(SEXPREC*, SEXPREC*) /tmp/RtmpujVail/R.INSTALLbe80bda04309/dplyr/src/mutate.cpp:43 #32 0x000000751516 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:757 #33 0x000000755cea in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #34 0x000000864bff in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1258 #35 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #36 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #37 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #38 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #39 0x00000087801b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001 #40 0x000000864246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #41 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #42 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #43 0x00000088110b in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #44 0x0000008ec585 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8121 #45 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #46 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #48 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #49 0x000000aa0486 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #50 0x000000aa0486 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #51 0x000000aa42c0 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #52 0x000000aa6113 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:509 #53 0x000000aa6e66 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #54 0x0000008e4c91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #55 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #56 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #58 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #59 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #60 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #61 0x7fe61c67a241 in eval_pipe_lazy /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:186 #62 0x7fe61c67a241 in magrittr_pipe /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:105 #63 0x00000073c80a in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573 #64 0x0000008d7a82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #65 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #66 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #68 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #69 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #70 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #71 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #72 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #73 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #74 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #75 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #76 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #77 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #78 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #80 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #81 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #82 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #83 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #84 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #85 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #86 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #87 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #88 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #89 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #90 0x000000864cb7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1191 #91 0x000000aa707f in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:575 #92 0x0000008e4c91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #93 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #94 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #95 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #96 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #97 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #98 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #99 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #100 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #101 0x000000896074 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683 #102 0x00000086460c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249 #103 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #104 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #105 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #106 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #107 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #108 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #109 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #110 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #111 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #112 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #113 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #114 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #115 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #116 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #117 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #118 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #119 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #120 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #121 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #122 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #123 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #124 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #125 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #126 0x000000864cb7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1191 #127 0x000000aa707f in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:575 #128 0x0000008e4c91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #129 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #130 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #131 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #132 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #133 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #134 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #135 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #136 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #137 0x000000896074 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683 #138 0x00000086460c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249 #139 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #140 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #141 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #142 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #143 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #144 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #145 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #146 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #147 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #148 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #149 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #150 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #151 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #152 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #153 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #154 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #155 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #156 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #157 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #158 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #159 0x7fe61c67a241 in eval_pipe_lazy /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:186 #160 0x7fe61c67a241 in magrittr_pipe /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:105 #161 0x00000073c80a in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573 #162 0x0000008d7a82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #163 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #164 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #165 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #166 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #167 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #168 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #169 0x7fe61c67a241 in eval_pipe_lazy /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:186 #170 0x7fe61c67a241 in magrittr_pipe /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:105 #171 0x00000073c80a in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573 #172 0x0000008d7a82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #173 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #174 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #175 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #176 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #177 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #178 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #179 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #180 0x000000864cb7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1191 #181 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #182 0x000000864cb7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1191 #183 0x0000005c5714 in do_switch /data/gannet/ripley/R/svn/R-devel/src/main/builtin.c:1077 #184 0x000000881bc5 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2427 #185 0x00000049a056 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #186 0x000000a9f276 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #187 0x0000008e4c91 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170 #188 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #189 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #190 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #191 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #192 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #193 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #194 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #195 0x000000864ddc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #196 0x000000896074 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683 #197 0x00000086460c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249 #198 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #199 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #200 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #201 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #202 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #203 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #204 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #205 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #206 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #207 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #208 0x000000931851 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #209 0x0000008aa931 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #210 0x0000008aa931 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867 #211 0x0000008e78fc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880 #212 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #213 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #214 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #215 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #216 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #217 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #218 0x7fe61c67a241 in eval_pipe_lazy /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:186 #219 0x7fe61c67a241 in magrittr_pipe /tmp/RtmpClTnct/R.INSTALL3617881124b9d4/magrittr/src/pipe.c:105 #220 0x00000073c80a in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573 #221 0x0000008d7a82 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150 #222 0x0000008c4ce3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533 #223 0x00000086376a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #224 0x00000087baaa in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398 #225 0x00000087fa5d in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314 #226 0x000000863e18 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333 #227 0x000000863e18 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #228 0x00000087801b in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001 #229 0x000000864246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #230 0x000000864246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230 #231 0x000000a0c4c8 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #232 0x000000a0c4c8 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #233 0x000000a1b7ba in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #234 0x000000a1b852 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #235 0x00000041309f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #236 0x7fe61c812574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #237 0x7fe61c812627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #238 0x000000413a84 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a84) (BuildId: 9d98f2d0bfefaa263789e01995a4f23655ed9716) *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: predict.nnet(model, newdata = d) 2: stats::predict(model, newdata = d) 3: check_values(stats::predict(model, newdata = d), min_mets, max_mets, label, "MET", "MET(s)", warn_high_low) 4: .Call(dplyr_mask_eval_all_mutate, quo, private) 5: eval() 6: mask$eval_all_mutate(quo) 7: mutate_col(dots[[i]], data, mask, new_columns) 8: withCallingHandlers(for (i in seq_along(dots)) { poke_error_context(dots, i, mask = mask) context_poke("column", old_current_column) new_columns <- mutate_col(dots[[i]], data, mask, new_columns)}, error = dplyr_error_handler(dots = dots, mask = mask, bullets = mutate_bullets, error_call = error_call, error_class = "dplyr:::mutate_error"), warning = dplyr_warning_handler(state = warnings_state, mask = mask, error_call = error_call)) 9: mutate_cols(.data, dplyr_quosures(...), by) 10: mutate.data.frame(., `:=`(!!as.name(out_name), check_values(stats::predict(model, newdata = d), min_mets, max_mets, label, "MET", "MET(s)", warn_high_low))) 11: dplyr::mutate(., `:=`(!!as.name(out_name), check_values(stats::predict(model, newdata = d), min_mets, max_mets, label, "MET", "MET(s)", warn_high_low))) 12: d %>% dplyr::mutate(`:=`(!!as.name(out_name), check_values(stats::predict(model, newdata = d), min_mets, max_mets, label, "MET", "MET(s)", warn_high_low))) 13: predict_model(d, out_name, model, label, min_mets, max_mets, warn_high_low) 14: predict_montoye(., "METs_left_wrist", "left", side, EE.Data::montoye_lw, "Montoye Left Wrist", min_mets, max_mets, warn_high_low) 15: predict_montoye(., "METs_right_wrist", "right", side, EE.Data::montoye_rw, "Montoye Right Wrist", min_mets, max_mets, warn_high_low) 16: dplyr::rename_with(., function(x, met_name, tag) { gsub(met_name, "", x) %>% paste0(tag, "_METs_", .)}, dplyr::matches(met_name), met_name = met_name, tag = tag) 17: is.factor(x) 18: gsub("[_.-]+", "_", names(.)) 19: stats::setNames(., gsub("[_.-]+", "_", names(.))) 20: dplyr::mutate(., dplyr::across(dplyr::contains("METs"), ~check_values(.x, minimum = min_mets, maximum = max_mets, label = gsub("[\\._\\-]+", "", toupper(tag)), variable = "MET", units = "MET(s)", warn_high_low = warn_high_low)), dplyr::across(dplyr::contains("METs"), ~.x * met_mlkgmin, .names = "{gsub(\"METs\", \"vo2_mlkgmin\", .col)}"), dplyr::across(dplyr::contains("vo2_mlkgmin"), ~.x/1000 * PAutilities::get_kcal_vo2_conversion(RER, "Lusk"), .names = "{gsub(\"vo2_mlkgmin\", \"kcal_kgmin\", .col)}")) 21: is.factor(x) 22: gsub("_+$", "", names(.)) 23: stats::setNames(., gsub("_+$", "", names(.))) 24: d %>% dplyr::rename_with(function(x, met_name, tag) { gsub(met_name, "", x) %>% paste0(tag, "_METs_", .)}, dplyr::matches(met_name), met_name = met_name, tag = tag) %>% stats::setNames(., gsub("[_.-]+", "_", names(.))) %>% dplyr::mutate(dplyr::across(dplyr::contains("METs"), ~check_values(.x, minimum = min_mets, maximum = max_mets, label = gsub("[\\._\\-]+", "", toupper(tag)), variable = "MET", units = "MET(s)", warn_high_low = warn_high_low)), dplyr::across(dplyr::contains("METs"), ~.x * met_mlkgmin, .names = "{gsub(\"METs\", \"vo2_mlkgmin\", .col)}"), dplyr::across(dplyr::contains("vo2_mlkgmin"), ~.x/1000 * PAutilities::get_kcal_vo2_conversion(RER, "Lusk"), .names = "{gsub(\"vo2_mlkgmin\", \"kcal_kgmin\", .col)}")) %>% stats::setNames(., gsub("_+$", "", names(.))) 25: met_expand(., "METs", "montoye", met_mlkgmin, min_mets, max_mets, RER, warn_high_low) 26: d %>% predict_montoye("METs_left_wrist", "left", side, EE.Data::montoye_lw, "Montoye Left Wrist", min_mets, max_mets, warn_high_low) %>% predict_montoye("METs_right_wrist", "right", side, EE.Data::montoye_rw, "Montoye Right Wrist", min_mets, max_mets, warn_high_low) %>% met_expand("METs", "montoye", met_mlkgmin, min_mets, max_mets, RER, warn_high_low) 27: montoye(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ...) 28: lapply(X = X, FUN = FUN, ...) 29: sapply(., switch, `Crouter 2006` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Crouter 2006", ..., met_name = "METs", tag = "crouter06"), `Crouter 2010` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Crouter 2010", ..., met_name = "METs", tag = "crouter10"), `Crouter 2012` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Crouter 2012", ..., met_name = "METs", tag = "crouter12"), `Crouter 2015` = crouter15(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, ...), `Hibbing 2018` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Hibbing 2018", ..., met_name = "METs", tag = "hibbing18"), `Hildebrand Linear` = hildebrand_linear(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ...), `Hildebrand Non-Linear` = hildebrand_nonlinear(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ...), `Montoye 2017` = montoye(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ...), SIP = sojourn(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, method = "SIP", ..., met_name = "METs", tag = "SIP"), `Sojourn 1x` = sojourn(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, method = "Sojourn 1x", ..., met_name = "METs", tag = "soj_1x"), `Sojourn 3x` = sojourn(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, method = "Sojourn 3x", ..., met_name = "METs", tag = "soj_3x"), `Staudenmayer Linear` = staudenmayer(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ..., select = "METs_lm"), `Staudenmayer Random Forest` = staudenmayer(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ..., select = "METs_rf"), `Staudenmayer Both` = staudenmayer(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ..., select = c("METs_lm", "METs_rf")), stop("Invalid value passed for `method` argument:", " see ?args(accelEE::accelEE) for options", call. = FALSE), simplify = FALSE) 30: is.factor(x) 31: gsub("^Staudenmayer Both$", "Staudenmayer", names(.)) 32: stats::setNames(., gsub("^Staudenmayer Both$", "Staudenmayer", names(.))) 33: method %>% sapply(switch, `Crouter 2006` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Crouter 2006", ..., met_name = "METs", tag = "crouter06"), `Crouter 2010` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Crouter 2010", ..., met_name = "METs", tag = "crouter10"), `Crouter 2012` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Crouter 2012", ..., met_name = "METs", tag = "crouter12"), `Crouter 2015` = crouter15(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, ...), `Hibbing 2018` = wrap_2RM(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, method = "Hibbing 2018", ..., met_name = "METs", tag = "hibbing18"), `Hildebrand Linear` = hildebrand_linear(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ...), `Hildebrand Non-Linear` = hildebrand_nonlinear(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ...), `Montoye 2017` = montoye(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ...), SIP = sojourn(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, method = "SIP", ..., met_name = "METs", tag = "SIP"), `Sojourn 1x` = sojourn(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, method = "Sojourn 1x", ..., met_name = "METs", tag = "soj_1x"), `Sojourn 3x` = sojourn(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, shrink_output = shrink_output, verbose = verbose, method = "Sojourn 3x", ..., met_name = "METs", tag = "soj_3x"), `Staudenmayer Linear` = staudenmayer(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ..., select = "METs_lm"), `Staudenmayer Random Forest` = staudenmayer(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ..., select = "METs_rf"), `Staudenmayer Both` = staudenmayer(d, time_var, output_epoch, warn_high_low = warn_high_low, met_mlkgmin = met_mlkgmin, RER = RER, feature_calc = feature_calc, shrink_output = shrink_output, verbose = verbose, ..., select = c("METs_lm", "METs_rf")), stop("Invalid value passed for `method` argument:", " see ?args(accelEE::accelEE) for options", call. = FALSE), simplify = FALSE) %>% stats::setNames(., gsub("^Staudenmayer Both$", "Staudenmayer", names(.))) 34: accelEE(d, c("Montoye 2017", "Staudenmayer Linear", "Staudenmayer Random Forest"), side = "left", ee_vars = "VO2", combine = FALSE) An irrecoverable exception occurred. R is aborting now ...