R Under development (unstable) (2025-03-06 r87892) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > pkgname <- "TukeyRegion" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > library('TukeyRegion') Loading required package: rgl Loading required package: ddalpha Loading required package: MASS Loading required package: class Loading required package: robustbase Loading required package: sfsmisc Loading required package: geometry Loading required package: bfp Loading required package: Rglpk Loading required package: slam Using the GLPK callable library version 5.0 > > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') > cleanEx() > nameEx("TukeyKMedian") > ### * TukeyKMedian > > flush(stderr()); flush(stdout()) > > ### Name: TukeyKMedian > ### Title: Computation of the Tukey median set and Tukey median > ### Aliases: TukeyKMedian > > ### ** Examples > > # Load required packages > require(TukeyRegion) > require(MASS) > # Generate data > set.seed(1) > X <- mvrnorm(100, rep(0, 3), + matrix(c(1, 1, 1, 1, 2, 2, 1, 2, 4), nrow = 3)) > # Compute the Tukey median > Tm <- TukeyKMedian(X) libqhull/qset.c:942:9: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea45e5 in qh_setnew libqhull/qset.c:942 #1 0x7f0c0adf20e0 in qh_initqhull_buffers libqhull/global.c:1434 #2 0x7f0c0ade01e8 in qh_init_B libqhull/global.c:537 #3 0x7f0c0aeea591 in qh_new_qhull libqhull/user.c:169 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:139:12: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeaa4c5 in qh_setappend libqhull/qset.c:139 #1 0x7f0c0aeac2cb in qh_settemp libqhull/qset.c:1149 #2 0x7f0c0add39c6 in qh_maxmin libqhull/geom2.c:1001 #3 0x7f0c0aeaf368 in qh_initbuild libqhull/poly2.c:1660 #4 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:137:25: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeaa431 in qh_setappend libqhull/qset.c:137 #1 0x7f0c0add3f42 in qh_maxmin libqhull/geom2.c:1032 #2 0x7f0c0aeaf368 in qh_initbuild libqhull/poly2.c:1660 #3 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:142:21: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeaa3e9 in qh_setappend libqhull/qset.c:142 #1 0x7f0c0add3f4e in qh_maxmin libqhull/geom2.c:1033 #2 0x7f0c0aeaf368 in qh_initbuild libqhull/poly2.c:1660 #3 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:1116:10: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae99540 in qh_setsize libqhull/qset.c:1116 #1 0x7f0c0add6e0d in qh_maxsimplex libqhull/geom2.c:1102 #2 0x7f0c0aeae938 in qh_initialvertices libqhull/poly2.c:1848 #3 0x7f0c0aeaf783 in qh_initbuild libqhull/poly2.c:1684 #4 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:65:25: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea9c84 in qh_setaddnth libqhull/qset.c:65 #1 0x7f0c0aeae829 in qh_initialvertices libqhull/poly2.c:1906 #2 0x7f0c0aeaf783 in qh_initbuild libqhull/poly2.c:1684 #3 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:76:21: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea9b38 in qh_setaddnth libqhull/qset.c:76 #1 0x7f0c0aeae829 in qh_initialvertices libqhull/poly2.c:1906 #2 0x7f0c0aeaf783 in qh_initbuild libqhull/poly2.c:1684 #3 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:391:10: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae940bc in qh_setdellast libqhull/qset.c:391 #1 0x7f0c0ae9a548 in qh_settemppop libqhull/qset.c:1223 #2 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1178 #3 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1173 #4 0x7f0c0aeae86f in qh_initialvertices libqhull/poly2.c:1907 #5 0x7f0c0aeaf783 in qh_initbuild libqhull/poly2.c:1684 #6 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #7 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #8 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #9 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #10 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #11 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:398:24: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae94117 in qh_setdellast libqhull/qset.c:398 #1 0x7f0c0ae9a548 in qh_settemppop libqhull/qset.c:1223 #2 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1178 #3 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1173 #4 0x7f0c0aeae86f in qh_initialvertices libqhull/poly2.c:1907 #5 0x7f0c0aeaf783 in qh_initbuild libqhull/poly2.c:1684 #6 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #7 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #8 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #9 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #10 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #11 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:399:11: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9417b in qh_setdellast libqhull/qset.c:399 #1 0x7f0c0ae9a548 in qh_settemppop libqhull/qset.c:1223 #2 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1178 #3 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1173 #4 0x7f0c0aeae86f in qh_initialvertices libqhull/poly2.c:1907 #5 0x7f0c0aeaf783 in qh_initbuild libqhull/poly2.c:1684 #6 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #7 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #8 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #9 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #10 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #11 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:978:12: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea5aac in qh_setnew_delnthsorted libqhull/qset.c:978 #1 0x7f0c0ae914b2 in qh_createsimplex libqhull/poly2.c:1043 #2 0x7f0c0ae9fb7e in qh_initialhull libqhull/poly2.c:1755 #3 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #4 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:1041:3: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae91c0f in qh_createsimplex libqhull/poly2.c:1041 #1 0x7f0c0ae9fb7e in qh_initialhull libqhull/poly2.c:1755 #2 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #3 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:1056:9: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae91ab9 in qh_createsimplex libqhull/poly2.c:1056 #1 0x7f0c0ae9fb7e in qh_initialhull libqhull/poly2.c:1755 #2 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #3 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:1281:9: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9a88d in qh_settruncate libqhull/qset.c:1281 #1 0x7f0c0ae916ab in qh_createsimplex libqhull/poly2.c:1058 #2 0x7f0c0ae9fb7e in qh_initialhull libqhull/poly2.c:1755 #3 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #4 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:1282:9: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9a838 in qh_settruncate libqhull/qset.c:1282 #1 0x7f0c0ae916ab in qh_createsimplex libqhull/poly2.c:1058 #2 0x7f0c0ae9fb7e in qh_initialhull libqhull/poly2.c:1755 #3 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #4 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:239:3: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae983d0 in qh_setcheck libqhull/qset.c:239 #1 0x7f0c0ae89ea0 in qh_checkfacet libqhull/poly2.c:596 #2 0x7f0c0ae8ef37 in qh_checkpolygon libqhull/poly2.c:857 #3 0x7f0c0aea03ca in qh_initialhull libqhull/poly2.c:1808 #4 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #5 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:245:19: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9842a in qh_setcheck libqhull/qset.c:245 #1 0x7f0c0ae89ea0 in qh_checkfacet libqhull/poly2.c:596 #2 0x7f0c0ae8ef37 in qh_checkpolygon libqhull/poly2.c:857 #3 0x7f0c0aea03ca in qh_initialhull libqhull/poly2.c:1808 #4 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #5 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:743:16: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae8b818 in qh_checkfacet libqhull/poly2.c:743 #1 0x7f0c0ae8ef37 in qh_checkpolygon libqhull/poly2.c:857 #2 0x7f0c0aea03ca in qh_initialhull libqhull/poly2.c:1808 #3 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #4 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:826:3: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae95bae in qh_setindex libqhull/qset.c:826 #1 0x7f0c0ae8b87b in qh_checkfacet libqhull/poly2.c:744 #2 0x7f0c0ae8ef37 in qh_checkpolygon libqhull/poly2.c:857 #3 0x7f0c0aea03ca in qh_initialhull libqhull/poly2.c:1808 #4 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #5 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:681:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae957af in qh_setequal_skip libqhull/qset.c:681 #1 0x7f0c0ae8b8de in qh_checkfacet libqhull/poly2.c:745 #2 0x7f0c0ae8ef37 in qh_checkpolygon libqhull/poly2.c:857 #3 0x7f0c0aea03ca in qh_initialhull libqhull/poly2.c:1808 #4 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #5 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:682:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9578c in qh_setequal_skip libqhull/qset.c:682 #1 0x7f0c0ae8b8de in qh_checkfacet libqhull/poly2.c:745 #2 0x7f0c0ae8ef37 in qh_checkpolygon libqhull/poly2.c:857 #3 0x7f0c0aea03ca in qh_initialhull libqhull/poly2.c:1808 #4 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #5 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:452:17: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae7bb34 in qh_checkconvex libqhull/poly2.c:452 #1 0x7f0c0aea03f6 in qh_initialhull libqhull/poly2.c:1809 #2 0x7f0c0aeaf7a4 in qh_initbuild libqhull/poly2.c:1685 #3 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/libqhull.c:793:7: runtime error: index 70 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae401e2 in qh_partitionall libqhull/libqhull.c:793 #1 0x7f0c0aeaf80c in qh_initbuild libqhull/poly2.c:1686 #2 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/libqhull.c:812:7: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae40009 in qh_partitionall libqhull/libqhull.c:812 #1 0x7f0c0aeaf80c in qh_initbuild libqhull/poly2.c:1686 #2 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/libqhull.c:817:13: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae40409 in qh_partitionall libqhull/libqhull.c:817 #1 0x7f0c0aeaf80c in qh_initbuild libqhull/poly2.c:1686 #2 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/libqhull.c:845:5: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae40365 in qh_partitionall libqhull/libqhull.c:845 #1 0x7f0c0aeaf80c in qh_initbuild libqhull/poly2.c:1686 #2 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:393:24: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9412b in qh_setdellast libqhull/qset.c:393 #1 0x7f0c0ae9a548 in qh_settemppop libqhull/qset.c:1223 #2 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1178 #3 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1173 #4 0x7f0c0aeafba7 in qh_initbuild libqhull/poly2.c:1729 #5 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:394:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae941f5 in qh_setdellast libqhull/qset.c:394 #1 0x7f0c0ae9a548 in qh_settemppop libqhull/qset.c:1223 #2 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1178 #3 0x7f0c0aeae02f in qh_settempfree libqhull/qset.c:1173 #4 0x7f0c0aeafba7 in qh_initbuild libqhull/poly2.c:1729 #5 0x7f0c0ae33834 in qh_qhull libqhull/libqhull.c:67 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/libqhull.c:672:5: runtime error: index 125 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae3ce65 in qh_nextfurthest libqhull/libqhull.c:672 #1 0x7f0c0ae32565 in qh_buildhull libqhull/libqhull.c:393 #2 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:851:19: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae81f46 in qh_matchnewfacets libqhull/poly.c:851 #1 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #2 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #3 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:852:22: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae814cb in qh_matchnewfacets libqhull/poly.c:852 #1 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #2 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #3 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:1334:9: runtime error: index 17 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9af3d in qh_setzero libqhull/qset.c:1334 #1 0x7f0c0aea481a in qh_newhashtable libqhull/poly2.c:2261 #2 0x7f0c0ae81657 in qh_matchnewfacets libqhull/poly.c:856 #3 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:732:22: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae80783 in qh_matchneighbor libqhull/poly.c:732 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:406:17: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae7779b in qh_gethash libqhull/poly.c:406 #1 0x7f0c0ae7e9f5 in qh_matchneighbor libqhull/poly.c:731 #2 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #3 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:736:28: runtime error: index 11 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae805e7 in qh_matchneighbor libqhull/poly.c:736 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:798:5: runtime error: index 11 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae80149 in qh_matchneighbor libqhull/poly.c:798 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:950:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae648dd in qh_matchvertices libqhull/poly.c:950 #1 0x7f0c0ae7ecd0 in qh_matchneighbor libqhull/poly.c:743 #2 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #3 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:951:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae64935 in qh_matchvertices libqhull/poly.c:951 #1 0x7f0c0ae7ecd0 in qh_matchneighbor libqhull/poly.c:743 #2 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #3 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:952:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae64b29 in qh_matchvertices libqhull/poly.c:952 #1 0x7f0c0ae7ecd0 in qh_matchneighbor libqhull/poly.c:743 #2 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #3 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:962:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae64399 in qh_matchvertices libqhull/poly.c:962 #1 0x7f0c0ae7ecd0 in qh_matchneighbor libqhull/poly.c:743 #2 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #3 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:744:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae80824 in qh_matchneighbor libqhull/poly.c:744 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:745:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae803c9 in qh_matchneighbor libqhull/poly.c:745 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:752:19: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae809db in qh_matchneighbor libqhull/poly.c:752 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:754:9: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae8031c in qh_matchneighbor libqhull/poly.c:754 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:755:9: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae80248 in qh_matchneighbor libqhull/poly.c:755 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:521:15: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae3b84f in qh_checkzero libqhull/merge.c:521 #1 0x7f0c0ae62693 in qh_premerge libqhull/merge.c:60 #2 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:898:28: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae95e62 in qh_setlast libqhull/qset.c:898 #1 0x7f0c0ae3e0f4 in qh_partitionpoint libqhull/libqhull.c:1032 #2 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #3 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:902:14: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae95e92 in qh_setlast libqhull/qset.c:902 #1 0x7f0c0ae3e0f4 in qh_partitionpoint libqhull/libqhull.c:1032 #2 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #3 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:211:27: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeadf1f in qh_setappend2ndlast libqhull/qset.c:211 #1 0x7f0c0ae3e759 in qh_partitionpoint libqhull/libqhull.c:1054 #2 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #3 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:216:23: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeadddf in qh_setappend2ndlast libqhull/qset.c:216 #1 0x7f0c0ae3e759 in qh_partitionpoint libqhull/libqhull.c:1054 #2 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #3 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:900:14: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae95f18 in qh_setlast libqhull/qset.c:900 #1 0x7f0c0ae3e0f4 in qh_partitionpoint libqhull/libqhull.c:1032 #2 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #3 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:862:5: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea929b in qh_setlarger libqhull/qset.c:862 #1 0x7f0c0aeaa08b in qh_setappend libqhull/qset.c:138 #2 0x7f0c0ae3e17a in qh_partitionpoint libqhull/libqhull.c:1051 #3 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #4 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #5 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #6 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #7 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #8 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #9 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #10 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #11 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:869:12: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea9437 in qh_setlarger libqhull/qset.c:869 #1 0x7f0c0aeaa08b in qh_setappend libqhull/qset.c:138 #2 0x7f0c0ae3e17a in qh_partitionpoint libqhull/libqhull.c:1051 #3 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #4 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #5 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #6 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #7 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #8 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #9 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #10 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #11 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:213:16: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeadf97 in qh_setappend2ndlast libqhull/qset.c:213 #1 0x7f0c0ae3e759 in qh_partitionpoint libqhull/libqhull.c:1054 #2 0x7f0c0ae42676 in qh_partitionvisible libqhull/libqhull.c:1147 #3 0x7f0c0ae30ed6 in qh_addpoint libqhull/libqhull.c:250 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #9 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #10 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:684:9: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae84b41 in qh_makenew_simplicial libqhull/poly.c:684 #1 0x7f0c0aea3b60 in qh_makenewfacets libqhull/poly2.c:1986 #2 0x7f0c0ae30be0 in qh_addpoint libqhull/libqhull.c:210 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly.c:736:28: runtime error: index 14 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae7ffe1 in qh_matchneighbor libqhull/poly.c:736 #1 0x7f0c0ae81764 in qh_matchnewfacets libqhull/poly.c:861 #2 0x7f0c0ae30d9e in qh_addpoint libqhull/libqhull.c:229 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #8 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #9 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:2416:3: runtime error: index 100 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9b218 in qh_point_add libqhull/poly2.c:2416 #1 0x7f0c0aead000 in qh_pointfacet libqhull/poly2.c:2467 #2 0x7f0c0ae8866b in qh_check_maxout libqhull/poly2.c:200 #3 0x7f0c0ae33b0a in qh_qhull libqhull/libqhull.c:99 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:2425:5: runtime error: index 60 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9b230 in qh_point_add libqhull/poly2.c:2425 #1 0x7f0c0aead000 in qh_pointfacet libqhull/poly2.c:2467 #2 0x7f0c0ae8866b in qh_check_maxout libqhull/poly2.c:200 #3 0x7f0c0ae33b0a in qh_qhull libqhull/libqhull.c:99 #4 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #5 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #6 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #7 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #8 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:203:5: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae8960d in qh_check_maxout libqhull/poly2.c:203 #1 0x7f0c0ae33b0a in qh_qhull libqhull/libqhull.c:99 #2 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #3 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #4 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #5 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #6 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #7 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #8 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #9 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #10 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #11 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #12 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #13 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #14 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #15 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #16 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #17 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #18 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #19 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #20 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #21 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #22 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #23 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #24 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #25 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #26 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/geom.c:341:11: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0ad94683 in qh_findbesthorizon libqhull/geom.c:341 #1 0x7f0c0ae88a45 in qh_check_maxout libqhull/poly2.c:211 #2 0x7f0c0ae33b0a in qh_qhull libqhull/libqhull.c:99 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/geom.c:341:11: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ad93c98 in qh_findbesthorizon libqhull/geom.c:341 #1 0x7f0c0ae88a45 in qh_check_maxout libqhull/poly2.c:211 #2 0x7f0c0ae33b0a in qh_qhull libqhull/libqhull.c:99 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/geom.c:355:7: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0ad951aa in qh_findbesthorizon libqhull/geom.c:355 #1 0x7f0c0ae88a45 in qh_check_maxout libqhull/poly2.c:211 #2 0x7f0c0ae33b0a in qh_qhull libqhull/libqhull.c:99 #3 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0aced9f1 in initRidges(std::vector >, std::allocator > > >&, int, int, int, std::vector >*, std::allocator >*> >&) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/common.cpp:864 #6 0x7f0c0ada3c9e in TRegionTau(std::vector >, std::allocator > > >, int, int, int, std::vector >*, std::queue >*, std::deque >*, std::allocator >*> > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:60 #7 0x7f0c0adaab18 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:309 #8 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #9 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #10 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #11 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #13 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #14 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #16 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #17 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #18 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #19 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #20 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #21 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #22 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #23 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #24 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #25 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #26 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #27 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:1383:3: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae4fbae in qh_makeridges libqhull/merge.c:1383 #1 0x7f0c0ae4fbae in qh_makeridges libqhull/merge.c:1365 #2 0x7f0c0ae58631 in qh_mergefacet libqhull/merge.c:2330 #3 0x7f0c0ae61186 in qh_mergecycle_all libqhull/merge.c:1860 #4 0x7f0c0ae6254d in qh_premerge libqhull/merge.c:72 #5 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #6 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #7 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #8 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #9 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #10 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #11 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:67:12: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea9cb5 in qh_setaddnth libqhull/qset.c:67 #1 0x7f0c0ae680fb in qh_mergesimplex libqhull/merge.c:2619 #2 0x7f0c0ae593fd in qh_mergefacet libqhull/merge.c:2356 #3 0x7f0c0ae61186 in qh_mergecycle_all libqhull/merge.c:1860 #4 0x7f0c0ae6254d in qh_premerge libqhull/merge.c:72 #5 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #6 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #7 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #8 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #9 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #10 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #11 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:354:12: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae93ba8 in qh_setdel libqhull/qset.c:354 #1 0x7f0c0ae68312 in qh_mergesimplex libqhull/merge.c:2665 #2 0x7f0c0ae593fd in qh_mergefacet libqhull/merge.c:2356 #3 0x7f0c0ae61186 in qh_mergecycle_all libqhull/merge.c:1860 #4 0x7f0c0ae6254d in qh_premerge libqhull/merge.c:72 #5 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #6 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #7 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #8 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #9 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #10 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #11 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:357:24: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae93bef in qh_setdel libqhull/qset.c:357 #1 0x7f0c0ae68312 in qh_mergesimplex libqhull/merge.c:2665 #2 0x7f0c0ae593fd in qh_mergefacet libqhull/merge.c:2356 #3 0x7f0c0ae61186 in qh_mergecycle_all libqhull/merge.c:1860 #4 0x7f0c0ae6254d in qh_premerge libqhull/merge.c:72 #5 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #6 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #7 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #8 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #9 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #10 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #11 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #12 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:2666:12: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae6834a in qh_mergesimplex libqhull/merge.c:2666 #1 0x7f0c0ae593fd in qh_mergefacet libqhull/merge.c:2356 #2 0x7f0c0ae61186 in qh_mergecycle_all libqhull/merge.c:1860 #3 0x7f0c0ae6254d in qh_premerge libqhull/merge.c:72 #4 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #5 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #6 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #7 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #8 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #9 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #10 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #11 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:281:3: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae9ac5d in qh_setcompact libqhull/qset.c:281 #1 0x7f0c0ae85650 in qh_updatevertices libqhull/poly.c:1160 #2 0x7f0c0ae30da3 in qh_addpoint libqhull/libqhull.c:230 #3 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #4 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #5 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #6 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #7 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #8 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #9 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #10 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #11 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #12 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #13 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #14 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #15 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #20 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #21 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #22 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #23 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #24 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #25 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #26 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #27 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #28 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:169:3: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea887e in qh_setappend_set libqhull/qset.c:169 #1 0x7f0c0ae83066 in qh_makenew_nonsimplicial libqhull/poly.c:585 #2 0x7f0c0aea383e in qh_makenewfacets libqhull/poly2.c:1983 #3 0x7f0c0ae30be0 in qh_addpoint libqhull/libqhull.c:210 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #9 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:172:10: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea87d6 in qh_setappend_set libqhull/qset.c:172 #1 0x7f0c0ae83066 in qh_makenew_nonsimplicial libqhull/poly.c:585 #2 0x7f0c0aea383e in qh_makenewfacets libqhull/poly2.c:1983 #3 0x7f0c0ae30be0 in qh_addpoint libqhull/libqhull.c:210 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #9 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:185:32: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0aea8a6b in qh_setappend_set libqhull/qset.c:185 #1 0x7f0c0ae83066 in qh_makenew_nonsimplicial libqhull/poly.c:585 #2 0x7f0c0aea383e in qh_makenewfacets libqhull/poly2.c:1983 #3 0x7f0c0ae30be0 in qh_addpoint libqhull/libqhull.c:210 #4 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #5 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #6 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #7 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #8 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #9 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #10 0x7f0c0ac54cac in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1278 #11 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #12 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #13 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #15 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #16 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #21 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #22 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #23 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #24 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #25 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #26 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #27 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #28 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #29 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:2642:5: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae69fee in qh_mergesimplex libqhull/merge.c:2642 #1 0x7f0c0ae593fd in qh_mergefacet libqhull/merge.c:2356 #2 0x7f0c0ae5e722 in qh_merge_nonconvex libqhull/merge.c:1697 #3 0x7f0c0ae5f5e0 in qh_all_merges libqhull/merge.c:241 #4 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #5 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #6 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #7 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #8 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #9 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #10 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #11 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #12 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #13 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #14 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #15 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #16 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #26 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #27 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #28 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #29 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #30 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:3091:18: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae74762 in qh_rename_sharedvertex libqhull/merge.c:3091 #1 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #2 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #3 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #4 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #5 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #6 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #7 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #8 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #9 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #10 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #11 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:1277:19: runtime error: index 5 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae4c624 in qh_hashridge libqhull/merge.c:1277 #1 0x7f0c0ae4d417 in qh_find_newvertex libqhull/merge.c:820 #2 0x7f0c0ae7455a in qh_rename_sharedvertex libqhull/merge.c:3122 #3 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #4 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #5 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #6 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #7 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #8 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #9 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #10 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #11 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #12 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #13 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #14 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #15 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #16 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #17 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #18 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #19 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #21 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #22 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #23 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #24 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #25 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #26 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #27 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #28 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #29 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #30 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #31 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:1278:7: runtime error: index 5 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae4c6a9 in qh_hashridge libqhull/merge.c:1278 #1 0x7f0c0ae4d417 in qh_find_newvertex libqhull/merge.c:820 #2 0x7f0c0ae7455a in qh_rename_sharedvertex libqhull/merge.c:3122 #3 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #4 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #5 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #6 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #7 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #8 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #9 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #10 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #11 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #12 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #13 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #14 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #15 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #16 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #17 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #18 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #19 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #21 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #22 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #23 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #24 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #25 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #26 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #27 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #28 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #29 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #30 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #31 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:1322:19: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae4cc3b in qh_hashridge_find libqhull/merge.c:1322 #1 0x7f0c0ae4d583 in qh_find_newvertex libqhull/merge.c:824 #2 0x7f0c0ae7455a in qh_rename_sharedvertex libqhull/merge.c:3122 #3 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #4 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #5 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #6 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #7 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #8 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #9 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #10 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #11 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #12 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #13 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #14 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #15 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #16 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #17 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #18 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #19 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #21 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #22 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #23 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #24 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #25 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #26 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #27 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #28 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #29 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #30 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #31 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:1322:19: runtime error: index 6 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae4cb1a in qh_hashridge_find libqhull/merge.c:1322 #1 0x7f0c0ae4d583 in qh_find_newvertex libqhull/merge.c:824 #2 0x7f0c0ae7455a in qh_rename_sharedvertex libqhull/merge.c:3122 #3 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #4 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #5 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #6 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #7 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #8 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #9 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #10 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #11 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #12 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #13 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #14 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #15 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #16 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #17 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #18 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #19 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #21 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #22 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #23 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #24 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #25 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #26 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #27 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #28 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #29 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #30 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #31 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:469:10: runtime error: index 2 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae98f9e in qh_setdelnthsorted libqhull/qset.c:469 #1 0x7f0c0ae6e552 in qh_renameridgevertex libqhull/merge.c:3152 #2 0x7f0c0ae6f225 in qh_renamevertex libqhull/merge.c:3217 #3 0x7f0c0ae74596 in qh_rename_sharedvertex libqhull/merge.c:3123 #4 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #5 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #6 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #7 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #8 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #9 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #10 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #11 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #12 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #13 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #14 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #15 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #16 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #17 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #18 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #19 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #20 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #22 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #23 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #24 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #25 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #26 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #27 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #28 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #29 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #30 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #31 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #32 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #34 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:475:21: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae98f42 in qh_setdelnthsorted libqhull/qset.c:475 #1 0x7f0c0ae6e552 in qh_renameridgevertex libqhull/merge.c:3152 #2 0x7f0c0ae6f225 in qh_renamevertex libqhull/merge.c:3217 #3 0x7f0c0ae74596 in qh_rename_sharedvertex libqhull/merge.c:3123 #4 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #5 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #6 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #7 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #8 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #9 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #10 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #11 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #12 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #13 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #14 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #15 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #16 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #17 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #18 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #19 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #20 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #22 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #23 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #24 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #25 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #26 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #27 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #28 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #29 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #30 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #31 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #32 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #34 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/qset.c:516:12: runtime error: index 13 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae94753 in qh_setdelsorted libqhull/qset.c:516 #1 0x7f0c0ae6fb1e in qh_renamevertex libqhull/merge.c:3239 #2 0x7f0c0ae74596 in qh_rename_sharedvertex libqhull/merge.c:3123 #3 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #4 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #5 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #6 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #7 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #8 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #9 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #10 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #11 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #12 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #13 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #14 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #15 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #16 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #17 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #18 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #19 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #21 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #22 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #23 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #24 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #25 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #26 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #27 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #28 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #29 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #30 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #31 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:1277:19: runtime error: index 3 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae4c5a8 in qh_hashridge libqhull/merge.c:1277 #1 0x7f0c0ae4d417 in qh_find_newvertex libqhull/merge.c:820 #2 0x7f0c0ae7455a in qh_rename_sharedvertex libqhull/merge.c:3122 #3 0x7f0c0ae761d1 in qh_reducevertices libqhull/merge.c:2945 #4 0x7f0c0ae5fa3b in qh_all_merges libqhull/merge.c:270 #5 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #6 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #7 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #8 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #9 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #10 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #11 0x7f0c0ad3a94a in getVertices(std::vector >, std::allocator > > >&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:517 #12 0x7f0c0adadc86 in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:461 #13 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #14 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #15 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #16 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #17 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #18 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #19 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #21 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #22 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #23 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #24 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #25 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #26 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #27 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #28 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #29 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #30 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #31 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #32 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #33 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/merge.c:2760:12: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0ae6c69d in qh_mergevertex_neighbors libqhull/merge.c:2760 #1 0x7f0c0ae58c7f in qh_mergefacet libqhull/merge.c:2368 #2 0x7f0c0ae5e722 in qh_merge_nonconvex libqhull/merge.c:1697 #3 0x7f0c0ae5f5e0 in qh_all_merges libqhull/merge.c:241 #4 0x7f0c0ae624de in qh_premerge libqhull/merge.c:87 #5 0x7f0c0ae313ed in qh_addpoint libqhull/libqhull.c:237 #6 0x7f0c0ae32555 in qh_buildhull libqhull/libqhull.c:395 #7 0x7f0c0ae33839 in qh_qhull libqhull/libqhull.c:68 #8 0x7f0c0aeea596 in qh_new_qhull libqhull/user.c:170 #9 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #10 0x7f0c0adaf19a in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:480 #11 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #12 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #13 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #14 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #15 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #16 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #17 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #19 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #20 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #21 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #23 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #25 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #26 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #27 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #28 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #29 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #30 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #31 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:2755:39: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeb64e6 in qh_triangulate libqhull/poly2.c:2755 #1 0x7f0c0ae04214 in qh_prepare_output libqhull/io.c:1075 #2 0x7f0c0aeea6e4 in qh_new_qhull libqhull/user.c:175 #3 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #4 0x7f0c0adaf19a in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:480 #5 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #6 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #7 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #8 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #9 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #10 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #11 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #13 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #14 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #15 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #17 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #19 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #21 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #22 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #24 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #25 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:3026:15: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeb58c8 in qh_triangulate_null libqhull/poly2.c:3026 #1 0x7f0c0aeb66bc in qh_triangulate libqhull/poly2.c:2757 #2 0x7f0c0ae04214 in qh_prepare_output libqhull/io.c:1075 #3 0x7f0c0aeea6e4 in qh_new_qhull libqhull/user.c:175 #4 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #5 0x7f0c0adaf19a in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:480 #6 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #7 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #8 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #9 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #10 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #11 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #12 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #13 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #14 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #15 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #16 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #17 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #18 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #19 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #20 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #21 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #22 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #23 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #24 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #25 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #26 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) libqhull/poly2.c:2783:7: runtime error: index 1 out of bounds for type 'setelemT [1]' #0 0x7f0c0aeb7555 in qh_triangulate libqhull/poly2.c:2783 #1 0x7f0c0ae04214 in qh_prepare_output libqhull/io.c:1075 #2 0x7f0c0aeea6e4 in qh_new_qhull libqhull/user.c:175 #3 0x7f0c0ad255e6 in getQHFacets(std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, bool, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TConvexBody.cpp:37 #4 0x7f0c0adaf19a in TukeyRegionTau(Rcpp::Matrix<14, Rcpp::PreserveStorage>, int, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, bool, std::queue >*, std::deque >*, std::allocator >*> > >*, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TkRegions.cpp:480 #5 0x7f0c0ac55ce3 in TukeyKMedian(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::String, Rcpp::String, bool, bool, bool, bool, bool, bool, bool, bool, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/TukeyRegionR.cpp:1291 #6 0x7f0c0ac9caea in _TukeyRegion_TukeyKMedian /data/gannet/ripley/R/packages/tests-gcc-SAN/TukeyRegion/src/RcppExports.cpp:154 #7 0x72001a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:801 #8 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #9 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #10 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #11 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #13 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #14 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #15 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #16 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #17 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #18 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #19 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #20 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #21 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #22 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #23 0x7f0c21a38087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #24 0x7f0c21a3814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #25 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) > summary(Tm) Object of class 'TukeyRegion': Input data is a 100x3 matrix Required depth level is 42 The region has 14 vertices and 24 hypertriangles defining facets The region's barycenter is in -0.0356637 -0.103982 -0.341343 > # Visualize the Tukey median > plot(Tm) Warning in (function (useNULL = rgl.useNULL()) : 'function (useNULL = rgl.useNULL()) { .Deprecated("open3d") ret <- .C(rgl_dev_open, success = FALSE, useNULL = useNULL) if (!ret$success) stop("'rgl.open' failed") }' is deprecated. Use 'open3d' instead. See help("Deprecated") Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, radius = 1, fastTransparency = TRUE, : NAs introduced by coercion Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") > > > > cleanEx() > nameEx("TukeyKRegions") > ### * TukeyKRegions > > flush(stderr()); flush(stdout()) > > ### Name: TukeyKRegions > ### Title: Computation of the Tukey Region > ### Aliases: TukeyKRegions > > ### ** Examples > > # Load required packages > require(TukeyRegion) > require(MASS) > # Generate data > set.seed(1) > X <- mvrnorm(500, rep(0, 3), + matrix(c(1, 0.25, 0.25, 0.25, 1, 0.25, 0.25, 0.25, 1), nrow = 3)) > # Compute the Tukey region > Trs <- TukeyKRegions(X, 5, "bfs", + retFacets = TRUE, retVolume = TRUE, retBarycenter = TRUE) > for (i in 1:5){ + summary(Trs[[i]]) + cat("\n") + } Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 1 46 halfspaces define the region The region has 25 vertices and 46 facets The region's volume equals 100.229 The region's barycenter is in -0.209525 -0.0755903 -0.226355 Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 2 150 halfspaces define the region The region has 180 vertices and 113 facets The region's volume equals 67.9845 The region's barycenter is in -0.118587 -0.0588013 -0.0636726 Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 3 308 halfspaces define the region The region has 327 vertices and 191 facets The region's volume equals 56.4259 The region's barycenter is in -0.0682692 -0.0228496 -0.00912524 Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 4 508 halfspaces define the region The region has 431 vertices and 225 facets The region's volume equals 49.8905 The region's barycenter is in -0.0631754 -0.0265998 0.0176292 Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 5 728 halfspaces define the region The region has 498 vertices and 273 facets The region's volume equals 45.4677 The region's barycenter is in -0.0695592 -0.03455 0.0118509 > > > > cleanEx() > nameEx("TukeyMedian") > ### * TukeyMedian > > flush(stderr()); flush(stdout()) > > ### Name: TukeyMedian > ### Title: Computation of the Tukey median set and Tukey median > ### Aliases: TukeyMedian > > ### ** Examples > > # Load required packages > require(TukeyRegion) > require(MASS) > # Generate data > set.seed(1) > X <- mvrnorm(100, rep(0, 3), + matrix(c(1, 1, 1, 1, 2, 2, 1, 2, 4), nrow = 3)) > # Compute the Tukey median > Tm <- TukeyMedian(X) > summary(Tm) Object of class 'TukeyRegion': Input data is a 100x3 matrix Required depth level is 42 The region has 14 vertices and 24 hypertriangles defining facets The region's barycenter is in -0.0356637 -0.103982 -0.341343 > # Visualize the Tukey median > plot(Tm) Warning in (function (useNULL = rgl.useNULL()) : 'function (useNULL = rgl.useNULL()) { .Deprecated("open3d") ret <- .C(rgl_dev_open, success = FALSE, useNULL = useNULL) if (!ret$success) stop("'rgl.open' failed") }' is deprecated. Use 'open3d' instead. See help("Deprecated") Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, radius = 1, fastTransparency = TRUE, : NAs introduced by coercion Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") > > > > cleanEx() > nameEx("TukeyRegion-package") > ### * TukeyRegion-package > > flush(stderr()); flush(stdout()) > > ### Name: TukeyRegion-package > ### Title: Computation of the Tukey Region and the Tukey Median > ### Aliases: TukeyRegion-package TukeyRegion-package > ### Keywords: Tukey region Tukey depth Halfspace depth Location depth > ### Halfspace contour Tukey median Barycenter Depth-weighted trimmed mean > > ### ** Examples > > # Load required packages > require(TukeyRegion) > require(MASS) > # Generate data > set.seed(1) > X <- mvrnorm(100, rep(0, 3), diag(3)) > # Compute and visualize two Tukey regions > Tr1 <- TukeyRegion(X, 5, "bfs", + retFacets = TRUE, retVolume = TRUE, retBarycenter = TRUE) > Tr2 <- TukeyRegion(X, 25, "bfs", + retFacets = TRUE, retVolume = TRUE, retBarycenter = TRUE) > plot(Tr1, colorFacets = "red", colorRidges = "red", + colorPoints = "blue", alpha = 0.35) Warning in (function (useNULL = rgl.useNULL()) : 'function (useNULL = rgl.useNULL()) { .Deprecated("open3d") ret <- .C(rgl_dev_open, success = FALSE, useNULL = useNULL) if (!ret$success) stop("'rgl.open' failed") }' is deprecated. Use 'open3d' instead. See help("Deprecated") Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, radius = 1, fastTransparency = TRUE, : NAs introduced by coercion Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, ...) : 'function (x, y = NULL, z = NULL, ...) { .Deprecated("segments3d") rgl.primitive0("lines", x, y, z, ...) }' is deprecated. Use 'segments3d' instead. See help("Deprecated") > plot(Tr2, newPlot = FALSE, drawPoints = FALSE, colorFacets = "green", + colorRidges = "green", alpha = 0.65) Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, ...) : 'function (x, y = NULL, z = NULL, ...) { .Deprecated("segments3d") rgl.primitive0("lines", x, y, z, ...) }' is deprecated. Use 'segments3d' instead. See help("Deprecated") > (Tr1$barycenter) [1] -0.05696759 0.01810704 0.05357702 > (Tr2$barycenter) [1] 0.07995476 -0.05661472 0.11056284 > # Compute arithmetic mean > T.mean <- colMeans(X) > (T.mean) [1] 0.02967354 -0.03780808 0.10888737 > # Compute Tukey depth trimmed weighted mean (approximate depth) > T.approx1 <- depth.wm(X, 0.25) > (T.approx1) [1] -0.1057249 -0.1620255 0.2640589 > T.approx2 <- depth.wm(X, 75) > (T.approx2) [1] 0.01755310 -0.07549198 0.14269152 > # Compute Tukey depth trimmed weighted mean (exact depth) > T.exact1 <- depth.wm(X, 0.25, exact = TRUE) > (T.exact1) [1] -0.1172857 -0.2769487 0.2236957 > T.exact2 <- depth.wm(X, 75, exact = TRUE) > (T.exact2) [1] 0.002045799 -0.088474396 0.154037587 > # Compute and visualize Tukey median > Tm <- TukeyMedian(X) > (Tm$barycenter) [1] -0.01357355 -0.11645035 0.14270464 > plot(Tm, newPlot = FALSE, drawPoints = FALSE) Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") > > > > cleanEx() > nameEx("TukeyRegion") > ### * TukeyRegion > > flush(stderr()); flush(stdout()) > > ### Name: TukeyRegion > ### Title: Computation of the Tukey Region > ### Aliases: TukeyRegion > > ### ** Examples > > # Load required packages > require(TukeyRegion) > require(MASS) > # Generate data > set.seed(1) > X <- mvrnorm(500, rep(0, 3), + matrix(c(1, 1, 1, 1, 2, 2, 1, 2, 4), nrow = 3)) > # Compute the Tukey region > Tr <- TukeyRegion(X, 10, "bfs", + retFacets = TRUE, retVolume = TRUE, retBarycenter = TRUE) > summary(Tr) Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 10 2264 halfspaces define the region The region has 831 vertices and 425 facets The region's volume equals 49.6728 The region's barycenter is in 0.0136802 -0.025383 -0.100404 > # Visualize the Tukey region > plot(Tr) Warning in (function (useNULL = rgl.useNULL()) : 'function (useNULL = rgl.useNULL()) { .Deprecated("open3d") ret <- .C(rgl_dev_open, success = FALSE, useNULL = useNULL) if (!ret$success) stop("'rgl.open' failed") }' is deprecated. Use 'open3d' instead. See help("Deprecated") Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, radius = 1, fastTransparency = TRUE, : NAs introduced by coercion Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, ...) : 'function (x, y = NULL, z = NULL, ...) { .Deprecated("segments3d") rgl.primitive0("lines", x, y, z, ...) }' is deprecated. Use 'segments3d' instead. See help("Deprecated") > > > > cleanEx() > nameEx("TukeyRegions") > ### * TukeyRegions > > flush(stderr()); flush(stdout()) > > ### Name: TukeyRegions > ### Title: Computation of the Tukey Region > ### Aliases: TukeyRegions > > ### ** Examples > > # Load required packages > require(TukeyRegion) > require(MASS) > # Generate data > set.seed(1) > X <- mvrnorm(500, rep(0, 3), + matrix(c(1, 0.25, 0.25, 0.25, 1, 0.25, 0.25, 0.25, 1), nrow = 3)) > # Compute the Tukey region > Trs <- TukeyRegions(X, c(5, 25), "bfs", + retFacets = TRUE, retVolume = TRUE, retBarycenter = TRUE) > summary(Trs[[1]]) Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 5 728 halfspaces define the region The region has 498 vertices and 273 facets The region's volume equals 45.4677 The region's barycenter is in -0.0695592 -0.03455 0.0118509 > summary(Trs[[2]]) Object of class 'TukeyRegion': Input data is a 500x3 matrix Required depth level is 25 9904 halfspaces define the region The region has 1181 vertices and 612 facets The region's volume equals 16.6752 The region's barycenter is in -0.0530509 -0.0087949 0.0040059 > # Visualize the Tukey region > plot(Trs[[2]], drawRidges = FALSE, colorFacets = "green", alpha = 1) Warning in (function (useNULL = rgl.useNULL()) : 'function (useNULL = rgl.useNULL()) { .Deprecated("open3d") ret <- .C(rgl_dev_open, success = FALSE, useNULL = useNULL) if (!ret$success) stop("'rgl.open' failed") }' is deprecated. Use 'open3d' instead. See help("Deprecated") Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, radius = 1, fastTransparency = TRUE, : NAs introduced by coercion Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") > plot(Trs[[1]], drawRidges = FALSE, newPlot = FALSE, colorFacets = "blue", + alpha = 0.5) Warning in (function (sphere = FALSE, fogtype = "none", color = c("black", : 'function (sphere = FALSE, fogtype = "none", color = c("black", "white"), back = "lines", fogScale = 1, ...) { .Deprecated("bg3d") rgl.material0(color = color, back = back, ...) fogtype <- rgl.enum.fogtype(fogtype) idata <- as.integer(c(sphere, fogtype)) fogScale <- as.numeric(fogScale) stopifnot(length(fogScale) == 1, fogScale > 0) ret <- .C(rgl_bg, success = as.integer(FALSE), idata, fogScale) if (!ret$success) stop("'rgl_bg' failed") lowlevel(ret$success) }' is deprecated. Use 'bg3d' instead. See help("Deprecated") Warning in (function (x, y = NULL, z = NULL, radius = 1, fastTransparency = TRUE, : NAs introduced by coercion Warning in (function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, : 'function (x, y = NULL, z = NULL, normals = NULL, texcoords = NULL, ...) { .Deprecated("triangles3d") rgl.primitive0("triangles", x, y, z, normals, texcoords, ...) }' is deprecated. Use 'triangles3d' instead. See help("Deprecated") > > > > cleanEx() > nameEx("depth.wm") > ### * depth.wm > > flush(stderr()); flush(stdout()) > > ### Name: depth.wm > ### Title: Computation of the Tukey depth weighted and/or trimmed mean > ### Aliases: depth.wm > > ### ** Examples > > # Load required packages > require(TukeyRegion) > require(bfp) > # Generate data > set.seed(1) > X <- bfp:::rmvt(150, diag(3), rep(0, 3), 1) > # Compute arithmetic mean > T.mean <- colMeans(X) > (T.mean) [1] -0.05515109 1.41515110 0.72864457 > # Compute Tukey depth trimmed weighted mean (approximate depth) > T.approx1 <- depth.wm(X, 0.25) > (T.approx1) [1] -0.04984787 0.21583883 0.07100896 > T.approx2 <- depth.wm(X, 25) > (T.approx2) [1] -0.03527631 0.18303612 0.07243525 > # Compute Tukey depth trimmed weighted mean (exact depth) > T.exact1 <- depth.wm(X, 0.25, exact = TRUE) > (T.exact1) [1] -0.05458514 0.12073339 0.11798379 > T.exact2 <- depth.wm(X, 25, exact = TRUE) > (T.exact2) [1] -0.04455146 0.14224242 0.06073673 > # Compute Tukey median > Tm <- TukeyMedian(X) > (Tm$barycenter) [1] 0.01244188 0.08081618 0.04471937 > > > > cleanEx() > nameEx("plot.TukeyRegion") > ### * plot.TukeyRegion > > flush(stderr()); flush(stdout()) > > ### Name: plot.TukeyRegion > ### Title: Plot the Tukey Region > ### Aliases: plot.TukeyRegion > > ### ** Examples > > # See examples in TukeyRegion or TukeyMedian > > > > cleanEx() > nameEx("summary.TukeyRegion") > ### * summary.TukeyRegion > > flush(stderr()); flush(stdout()) > > ### Name: summary.TukeyRegion > ### Title: Prints Summary of the Tukey Region > ### Aliases: summary.TukeyRegion > > ### ** Examples > > # See examples in TukeyRegion or TukeyMedian > > > > ### *