R Under development (unstable) (2022-08-09 r82699) -- "Unsuffered Consequences"
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> pkgname <- "SurfaceReconstruction"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> library('SurfaceReconstruction')
> 
> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
> base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv')
> cleanEx()
> nameEx("AFSreconstruction")
> ### * AFSreconstruction
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: AFSreconstruction
> ### Title: Advancing front surface reconstruction
> ### Aliases: AFSreconstruction
> 
> ### ** Examples
> 
> library(SurfaceReconstruction)
> data(bunny, package = "onion")
> mesh <- AFSreconstruction(bunny)
> library(rgl)
> shade3d(mesh, color = "firebrick")
> 
> 
> 
> cleanEx()

detaching ‘package:rgl’

> nameEx("PoissonReconstruction")
> ### * PoissonReconstruction
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: PoissonReconstruction
> ### Title: Poisson surface reconstruction
> ### Aliases: PoissonReconstruction
> 
> ### ** Examples
> 
> library(SurfaceReconstruction)
> library(rgl)
> 
> # Solid Möbius strip 
> Psr_mesh <- PoissonReconstruction(SolidMobiusStrip)
/data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Poisson_reconstruction_function.h:266:70: runtime error: reference binding to null pointer of type 'struct value_type'
    #0 0x7f806a9c4eab in CGAL::Poisson_reconstruction_function<CGAL::Epick>::Cell_hint::get() const /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Poisson_reconstruction_function.h:266
    #1 0x7f806a9c4eab in CGAL::Poisson_reconstruction_function<CGAL::Epick>::operator()(CGAL::Point_3<CGAL::Epick> const&) const /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Poisson_reconstruction_function.h:619
    #2 0x7f806a23d7d9 in std::function<double (CGAL::Point_3<CGAL::Epick>)>::operator()(CGAL::Point_3<CGAL::Epick>) const /usr/include/c++/11/bits/std_function.h:590
    #3 0x7f806a23d7d9 in CGAL::Implicit_surface_3<CGAL::Epick, CGAL::Poisson_reconstruction_function<CGAL::Epick> >::operator()(CGAL::Point_3<CGAL::Epick>) const /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Implicit_surface_3.h:64
    #4 0x7f806a23d7d9 in surf_equation /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:325
    #5 0x7f806a23d7d9 in operator() /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:252
    #6 0x7f806a23d7d9 in operator()<CGAL::Insert_iterator<CGAL::Delaunay_triangulation_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_data_structure_3<CGAL::Surface_mesh_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Delaunay_triangulation_cell_base_with_circumcenter_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Surface_mesh_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > > > >, CGAL::Sequential_tag>, CGAL::Default, CGAL::Default> > > /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:446
    #7 0x7f806a23d7d9 in make_surface_mesh<CGAL::Surface_mesh_complex_2_in_triangulation_3<CGAL::Delaunay_triangulation_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_data_structure_3<CGAL::Surface_mesh_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Delaunay_triangulation_cell_base_with_circumcenter_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Surface_mesh_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > > > >, CGAL::Sequential_tag>, CGAL::Default, CGAL::Default> >, CGAL::Surface_mesher::Implicit_surface_oracle_3<CGAL::Epick, CGAL::Implicit_surface_3<CGAL::Epick, CGAL::Poisson_reconstruction_function<CGAL::Epick> >, CGAL::INTERN_RET::Real_embeddable_traits_base<double, CGAL::Boolean_tag<true> >::Sgn, CGAL::Surface_mesher::(anonymous namespace)::Return_min<CGAL::Sign>, CGAL::Creator_uniform_3<double, CGAL::Point_3<CGAL::Epick> >, CGAL::Surface_mesher::Null_oracle_visitor>, CGAL::Surface_mesh_default_criteria_3<CGAL::Delaunay_triangulation_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_data_structure_3<CGAL::Surface_mesh_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Delaunay_triangulation_cell_base_with_circumcenter_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Surface_mesh_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > > > >, CGAL::Sequential_tag>, CGAL::Default, CGAL::Default> >, CGAL::Manifold_with_boundary_tag> /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/make_surface_mesh.h:92
    #8 0x7f806a2674bd in void CGAL::make_surface_mesh<CGAL::Surface_mesh_complex_2_in_triangulation_3<CGAL::Delaunay_triangulation_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_data_structure_3<CGAL::Surface_mesh_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Delaunay_triangulation_cell_base_with_circumcenter_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Surface_mesh_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > > > >, CGAL::Sequential_tag>, CGAL::Default, CGAL::Default> >, CGAL::Implicit_surface_3<CGAL::Epick, CGAL::Poisson_reconstruction_function<CGAL::Epick> >, CGAL::Surface_mesh_default_criteria_3<CGAL::Delaunay_triangulation_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_data_structure_3<CGAL::Surface_mesh_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Delaunay_triangulation_cell_base_with_circumcenter_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Surface_mesh_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > > > >, CGAL::Sequential_tag>, CGAL::Default, CGAL::Default> >, CGAL::Manifold_with_boundary_tag>(CGAL::Surface_mesh_complex_2_in_triangulation_3<CGAL::Delaunay_triangulation_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_data_structure_3<CGAL::Surface_mesh_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Delaunay_triangulation_cell_base_with_circumcenter_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Surface_mesh_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > > > >, CGAL::Sequential_tag>, CGAL::Default, CGAL::Default> >&, CGAL::Implicit_surface_3<CGAL::Epick, CGAL::Poisson_reconstruction_function<CGAL::Epick> > const&, CGAL::Surface_mesh_default_criteria_3<CGAL::Delaunay_triangulation_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_data_structure_3<CGAL::Surface_mesh_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_vertex_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_vertex_base_3<void> > >, CGAL::Delaunay_triangulation_cell_base_with_circumcenter_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Surface_mesh_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_cell_base_3<CGAL::Robust_circumcenter_traits_3<CGAL::Epick>, CGAL::Triangulation_ds_cell_base_3<void> > > > >, CGAL::Sequential_tag>, CGAL::Default, CGAL::Default> > const&, CGAL::Manifold_with_boundary_tag, int) /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/make_surface_mesh.h:51
    #9 0x7f806a2674bd in bool CGAL::poisson_surface_reconstruction_delaunay<__gnu_cxx::__normal_iterator<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> >*, std::vector<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> >, std::allocator<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> > > > >, CGAL::First_of_pair_property_map<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> > >, CGAL::Second_of_pair_property_map<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> > >, CGAL::Polyhedron_3<CGAL::Epick, CGAL::Polyhedron_items_with_id_3, CGAL::HalfedgeDS_default, std::allocator<int> >, CGAL::Manifold_with_boundary_tag>(__gnu_cxx::__normal_iterator<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> >*, std::vector<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> >, std::allocator<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> > > > >, __gnu_cxx::__normal_iterator<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> >*, std::vector<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> >, std::allocator<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> > > > >, CGAL::First_of_pair_property_map<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> > >, CGAL::Second_of_pair_property_map<std::pair<CGAL::Point_3<CGAL::Epick>, CGAL::Vector_3<CGAL::Epick> > >, CGAL::Polyhedron_3<CGAL::Epick, CGAL::Polyhedron_items_with_id_3, CGAL::HalfedgeDS_default, std::allocator<int> >&, double, double, double, double, CGAL::Manifold_with_boundary_tag) /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/poisson_surface_reconstruction.h:126
    #10 0x7f806a2674bd in Poisson_reconstruction_cpp(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Matrix<14, Rcpp::PreserveStorage>, double, double, double, double) /data/gannet/ripley/R/packages/tests-gcc-SAN/SurfaceReconstruction/src/reconstruction.cpp:155
    #11 0x7f8069bd0065 in _SurfaceReconstruction_Poisson_reconstruction_cpp /data/gannet/ripley/R/packages/tests-gcc-SAN/SurfaceReconstruction/src/RcppExports.cpp:73
    #12 0x580137 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:617
    #13 0x63a716 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7682
    #14 0x6731d7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748
    #15 0x6782b0 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918
    #16 0x67a6a7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844
    #17 0x647faf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7094
    #18 0x6731d7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748
    #19 0x6782b0 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918
    #20 0x67a6a7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844
    #21 0x67384f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:871
    #22 0x67f929 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2981
    #23 0x673c70 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:823
    #24 0x6f7fed in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264
    #25 0x6f8680 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:316
    #26 0x6f87c4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1194
    #27 0x6f8812 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1201
    #28 0x41b418 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29
    #29 0x7f8080159b74 in __libc_start_main (/lib64/libc.so.6+0x27b74)
    #30 0x41dc1d in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41dc1d)

Poisson reconstruction using average spacing: 0.03691.
> shade3d(Psr_mesh, color= "yellow")
> wire3d(Psr_mesh, color = "black")
> 
> # Hopf torus
> Psr_mesh <- PoissonReconstruction(HopfTorus, spacing = 0.2)
> shade3d(Psr_mesh, color= "darkorange")
> wire3d(Psr_mesh, color = "black")
> 
> 
> 
> cleanEx()

detaching ‘package:rgl’

> nameEx("getSomeNormals")
> ### * getSomeNormals
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: getSomeNormals
> ### Title: Normals for a points could
> ### Aliases: getSomeNormals
> 
> ### ** Examples
> 
> library(SurfaceReconstruction)
> library(rgl)
> psr <- PoissonReconstruction(ICN5D_eight, getSomeNormals(6))
Poisson reconstruction using average spacing: 0.1178.
> open3d()
null 
   2 
> shade3d(psr, color = "cyan")
> wire3d(psr)
> 
> 
> 
> ### * <FOOTER>
> ###
> cleanEx()

detaching ‘package:rgl’

> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed:  572.069 795.089 1382.288 0.003 0.001 
> grDevices::dev.off()
null device 
          1 
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')