--- re-building ‘SIPmg-vignette.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/example scaling plot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17710 bytes Input file size = 17812 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13042 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13042 Output IDAT size = 13042 bytes (4668 bytes decrease) Output file size = 13120 bytes (4692 bytes = 26.34% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/Plot atom fraction excess-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43479 bytes Input file size = 43617 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25905 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25905 Output IDAT size = 25905 bytes (17574 bytes decrease) Output file size = 25983 bytes (17634 bytes = 40.43% decrease) nativeRaster.c:60:21: runtime error: signed integer overflow: 16777216 * 162 cannot be represented in type 'int' #0 0x7b4433f90868 in nativeRaster /tmp/Rtmp964r8d/R.INSTALL3a7a4c214cc422/EBImage/src/nativeRaster.c:60 #1 0x00000074c858 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #2 0x0000008e360a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8664 #3 0x0000008b9e4b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #4 0x0000008eac85 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7971 #5 0x0000008b9e4b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #6 0x00000085a1c2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #7 0x00000086ff0a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #8 0x000000873fca in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #9 0x00000085a863 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #10 0x00000085a863 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #11 0x000000890201 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #12 0x0000008ccc02 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #13 0x0000008b9e4b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #14 0x00000085a1c2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x0000009214e1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #16 0x00000085b81c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #17 0x000000892cc3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3980 #18 0x000000a91bf6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #19 0x0000008d9e11 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8134 #20 0x0000008b9e4b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #21 0x00000085a1c2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x0000009214e1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #23 0x00000085b81c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #24 0x0000009214e1 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x0000008a4d21 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #26 0x0000008a4d21 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5831 #27 0x0000008dca7c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7844 #28 0x0000008b9e4b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #29 0x00000085a1c2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x00000086ff0a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #31 0x000000873fca in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #32 0x00000085a863 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #33 0x00000085a863 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #34 0x000000890201 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3937 #35 0x0000008ccc02 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8114 #36 0x0000008b9e4b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #37 0x00000085a1c2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x00000086ff0a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #39 0x000000873fca in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #40 0x00000085a863 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #41 0x00000085a863 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #42 0x00000086ff0a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #43 0x000000873fca in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #44 0x0000008e1705 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #45 0x0000008e1705 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085 #46 0x0000008b9e4b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7497 #47 0x00000085a1c2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x00000086ff0a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #49 0x000000873fca in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #50 0x00000085a863 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #51 0x00000085a863 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #52 0x000000a001c8 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #53 0x000000a001c8 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #54 0x000000a055fa in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #55 0x000000a0f812 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #56 0x0000004131bf in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #57 0x7f4451e115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #58 0x7f4451e116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #59 0x000000413b84 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b84) (BuildId: ed6880c32b27ed2aecc626b301a848f6884903bd) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/show images-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9812 bytes Input file size = 9902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7363 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7363 Output IDAT size = 7363 bytes (2449 bytes decrease) Output file size = 7441 bytes (2461 bytes = 24.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/show images-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9954 bytes Input file size = 10044 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7352 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7352 Output IDAT size = 7352 bytes (2602 bytes decrease) Output file size = 7430 bytes (2614 bytes = 26.03% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/outlier sequin coverages-1.png 288x288 pixels, 8 bits/pixel, 178 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 1829 bytes Input file size = 2453 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1564 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1552 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1552 Output IDAT size = 1552 bytes (277 bytes decrease) Output file size = 1630 bytes (823 bytes = 33.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/better fit-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7513 bytes Input file size = 7591 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5574 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5574 Output IDAT size = 5574 bytes (1939 bytes decrease) Output file size = 5652 bytes (1939 bytes = 25.54% decrease) [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘SIPmg-vignette.Rmd’