--- re-building ‘my-vignette.Rmd’ using rmarkdown match_pdict_ACtree2.c:511:6: runtime error: left shift of 1073741824 by 1 places cannot be represented in type 'int' #0 0x7ff2e827567d in get_ACnode_link /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:511 #1 0x7ff2e82ae4ab in add_pattern /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:764 #2 0x7ff2e82ae4ab in ACtree2_build /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:824 #3 0x721548 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:766 #4 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #5 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #6 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #7 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #8 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #9 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #10 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #11 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #12 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #13 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #14 0x84ff33 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2996 #15 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #20 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #21 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #23 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #24 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #25 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #26 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #27 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #28 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #30 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #31 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #32 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #33 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #34 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #35 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #37 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #38 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #39 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #40 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #41 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #42 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #43 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #44 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #45 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #47 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #48 0x85bfc6 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3984 #49 0xa52eca in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #50 0x8b6b9d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8138 #51 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #52 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #54 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #55 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #56 0x88582f in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #57 0x88582f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5835 #58 0x8b8feb in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7848 #59 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #60 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #62 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #63 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #64 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #65 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #66 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #67 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #68 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #70 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #71 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #72 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #73 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #74 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #75 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #76 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #77 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #78 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #80 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #81 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #82 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #83 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #84 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #85 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #86 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #87 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7ff303638087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #89 0x7ff30363814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #90 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) match_pdict_ACtree2.c:537:7: runtime error: left shift of 1073741824 by 1 places cannot be represented in type 'int' #0 0x7ff2e82763ea in set_ACnode_link /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:537 #1 0x7ff2e82aea33 in add_pattern /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:777 #2 0x7ff2e82aea33 in ACtree2_build /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:824 #3 0x721548 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:766 #4 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #5 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #6 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #7 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #8 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #9 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #10 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #11 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #12 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #13 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #14 0x84ff33 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2996 #15 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #16 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #17 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #18 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #19 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #20 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #21 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #23 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #24 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #25 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #26 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #27 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #28 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #30 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #31 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #32 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #33 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #34 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #35 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #37 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #38 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #39 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #40 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #41 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #42 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #43 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #44 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #45 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #47 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #48 0x85bfc6 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3984 #49 0xa52eca in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #50 0x8b6b9d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8138 #51 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #52 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #54 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #55 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #56 0x88582f in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #57 0x88582f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5835 #58 0x8b8feb in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7848 #59 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #60 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #62 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #63 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #64 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #65 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #66 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #67 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #68 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #70 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #71 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #72 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #73 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #74 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #75 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #76 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #77 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #78 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #80 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #81 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #82 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #83 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #84 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #85 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #86 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #87 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7ff303638087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #89 0x7ff30363814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #90 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) match_pdict_ACtree2.c:439:19: runtime error: left shift of 1073741824 by 1 places cannot be represented in type 'int' #0 0x7ff2e827635d in extend_ACnode /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:439 #1 0x7ff2e8276483 in set_ACnode_link /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:543 #2 0x7ff2e82aea33 in add_pattern /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:777 #3 0x7ff2e82aea33 in ACtree2_build /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:824 #4 0x721548 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:766 #5 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #6 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #7 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #8 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #9 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #10 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #11 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #12 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #13 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #14 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #15 0x84ff33 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2996 #16 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #17 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #18 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #19 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #20 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #21 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #22 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #23 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #24 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #25 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #26 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #27 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #28 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #29 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #31 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #32 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #33 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #34 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #35 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #36 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #38 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #39 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #40 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #41 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #42 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #43 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #44 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #45 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #46 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #47 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #48 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #49 0x85bfc6 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3984 #50 0xa52eca in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #51 0x8b6b9d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8138 #52 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #53 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #55 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #56 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #57 0x88582f in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #58 0x88582f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5835 #59 0x8b8feb in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7848 #60 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #61 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #63 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #64 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #65 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #66 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #67 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #68 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #69 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #71 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #72 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #73 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #74 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #75 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #76 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #77 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #78 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #79 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #80 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #81 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #82 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #83 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #84 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #85 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #86 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #87 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #88 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #89 0x7ff303638087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #90 0x7ff30363814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #91 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) match_pdict_ACtree2.c:554:7: runtime error: left shift of 1073741824 by 1 places cannot be represented in type 'int' #0 0x7ff2e8275886 in get_ACnode_flink /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:554 #1 0x7ff2e8276883 in transition /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:883 #2 0x7ff2e8276883 in transition /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:871 #3 0x7ff2e82b00de in walk_tb_subject /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:1013 #4 0x7ff2e82b00de in _match_tbACtree2 /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:1169 #5 0x7ff2e82b810b in match_pdict /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict.c:68 #6 0x7ff2e82bac96 in match_PDict3Parts_XString /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict.c:167 #7 0x72586a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:790 #8 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #9 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #10 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #11 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #13 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #14 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #15 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #16 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #26 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #27 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #28 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #31 0x85bfc6 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3984 #32 0xa52eca in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #33 0x8b6b9d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8138 #34 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #35 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #37 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #38 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #39 0x88582f in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #40 0x88582f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5835 #41 0x8b8feb in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7848 #42 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #43 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #45 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #46 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #47 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #48 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #49 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #50 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #51 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #53 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #54 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #55 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #56 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #57 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #58 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #59 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #60 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #61 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #63 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #64 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #65 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #66 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #67 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #68 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #69 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #70 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #71 0x7ff303638087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #72 0x7ff30363814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #73 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) match_pdict_ACtree2.c:564:7: runtime error: left shift of 1073741824 by 1 places cannot be represented in type 'int' #0 0x7ff2e82766b4 in set_ACnode_flink /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:564 #1 0x7ff2e82768a9 in transition /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:886 #2 0x7ff2e82768a9 in transition /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:871 #3 0x7ff2e82b00de in walk_tb_subject /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:1013 #4 0x7ff2e82b00de in _match_tbACtree2 /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict_ACtree2.c:1169 #5 0x7ff2e82b810b in match_pdict /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict.c:68 #6 0x7ff2e82bac96 in match_PDict3Parts_XString /tmp/RtmpgBifR2/R.INSTALL26c793270c162b/Biostrings/src/match_pdict.c:167 #7 0x72586a in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:790 #8 0x73d2d2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #9 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #10 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #11 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #13 0x8552b8 in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2562 #14 0x7ff300939a78 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154 #15 0xa694ee in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348 #16 0x8c20ab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8053 #17 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #18 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #20 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #21 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #22 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #23 0x865a36 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567 #24 0x841676 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #25 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #26 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #27 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #28 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #30 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #31 0x85bfc6 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3984 #32 0xa52eca in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #33 0x8b6b9d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8138 #34 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #35 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #36 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #37 0x84221c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #38 0x8fd06b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #39 0x88582f in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #40 0x88582f in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5835 #41 0x8b8feb in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7848 #42 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #43 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #45 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #46 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #47 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #48 0x86dc49 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3941 #49 0x8a9b23 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118 #50 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #51 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #53 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #54 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #55 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #56 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #57 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #58 0x8bd9e5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #59 0x8bd9e5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8089 #60 0x87aab7 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501 #61 0x840bc2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x84bb92 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #63 0x83f53a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #64 0x841246 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #65 0x841246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #66 0x9cb7f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #67 0x9cb7f9 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #68 0x9ccd0b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #69 0x9d7322 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #70 0x42b30f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #71 0x7ff303638087 in __libc_start_call_main (/lib64/libc.so.6+0x2a087) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #72 0x7ff30363814a in __libc_start_main_impl (/lib64/libc.so.6+0x2a14a) (BuildId: c8c3fa52aaee3f5d73b6fd862e39e9d4c010b6ba) #73 0x42bcf4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x42bcf4) (BuildId: 41ca0fedb65141fd581a46d5facdb29622b9ce1e) --- finished re-building ‘my-vignette.Rmd’