--- re-building ‘engine.Rmd’ using rmarkdown --- finished re-building ‘engine.Rmd’ --- re-building ‘formats.Rmd’ using rmarkdown --- finished re-building ‘formats.Rmd’ --- re-building ‘indexing.Rmd’ using rmarkdown --- finished re-building ‘indexing.Rmd’ --- re-building ‘joins.Rmd’ using rmarkdown ================================================================= ==2407028==ERROR: AddressSanitizer: unknown-crash on address 0x7c4b084183e3 at pc 0x7b9af4e52645 bp 0x7ffcc5ed7920 sp 0x7ffcc5ed7918 READ of size 16 at 0x7c4b084183e3 thread T0 #0 0x7b9af4e52644 in _mm_loadu_si128 /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 #1 0x7b9af4e52644 in tdc_copy16 tdc/src/entropy/../core/simd.h:54 #2 0x7b9af4e52644 in lz_decode_fast tdc/src/entropy/lz.c:821 #3 0x7b9af4e52644 in lz_decode_core tdc/src/entropy/lz.c:960 #4 0x7b9af4e52644 in lz_decode tdc/src/entropy/lz.c:996 #5 0x7b9af4e52644 in lz_decode tdc/src/entropy/lz.c:991 #6 0x7b9af4e083cc in driver_decode_block_impl tdc/src/api/decode_impl.c:252 #7 0x7b9af4e0a04c in tdc_decode_block_into tdc/src/api/decode_into.c:102 #8 0x7b9af4dcae71 in vtr_decode_column_tdc_into /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:345 #9 0x7b9af4dcb900 in vtr_decode_column_tdc /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:434 #10 0x7b9af4dcdf39 in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:845 #11 0x7b9af4dcf6cd in vtr1_read_rowgroup_tdc_ex /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:885 #12 0x7b9af4d615bf in scan_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:740 #13 0x7b9af4d057cf in join_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/join.c:975 #14 0x7b9af4c67027 in vec_collect /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/collect.c:839 #15 0x0000007517c8 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #16 0x0000008ee872 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8678 #17 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #18 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #20 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #21 0x000000a9f503 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #22 0x000000a9f503 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #23 0x000000aa3300 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #24 0x000000aa5285 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #25 0x000000aa5ea6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #26 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #27 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #28 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #30 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #31 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #32 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #34 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #35 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #36 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #38 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #39 0x0000008a11e3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3996 #40 0x000000a9e2f6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #41 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #42 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #43 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #44 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #45 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #46 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #47 0x0000008ab8d1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #48 0x0000008ab8d1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5845 #49 0x0000008e7bdc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7858 #50 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #51 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #52 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #53 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #54 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #55 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #56 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #57 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #58 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #59 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #60 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #61 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #62 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #63 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #64 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #65 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #66 0x0000008ec865 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #67 0x0000008ec865 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8099 #68 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #69 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #70 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #71 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #72 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #73 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #74 0x000000a0b548 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #75 0x000000a0b548 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #76 0x000000a1a83a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #77 0x000000a1a8d2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #78 0x0000004130af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #79 0x7f9b0ba12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #80 0x7f9b0ba12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #81 0x000000413a94 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a94) (BuildId: eec42e90eaa69a53110a23d0a12349ddd6cb1dae) 0x7c4b084183f0 is located 0 bytes after 112-byte region [0x7c4b08418380,0x7c4b084183f0) allocated by thread T0 here: #0 0x7f9b0d0e5e4b in realloc.part.0 (/lib64/libasan.so.8+0xe5e4b) (BuildId: d3cb6206dff19da52969c009f4cd93611901c478) #1 0x7b9af4dcdafb in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:810 #2 0x7b9af4dcf6cd in vtr1_read_rowgroup_tdc_ex /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:885 #3 0x7b9af4d615bf in scan_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:740 #4 0x7b9af4d057cf in join_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/join.c:975 #5 0x7b9af4c67027 in vec_collect /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/collect.c:839 #6 0x0000007517c8 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #7 0x0000008ee872 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8678 #8 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #9 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #10 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #11 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #12 0x000000a9f503 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #13 0x000000a9f503 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #14 0x000000aa3300 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #15 0x000000aa5285 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #16 0x000000aa5ea6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #17 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #18 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #19 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #21 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #22 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #23 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #24 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #25 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #26 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #27 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #29 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #30 0x0000008a11e3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3996 #31 0x000000a9e2f6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 SUMMARY: AddressSanitizer: unknown-crash /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 in _mm_loadu_si128 Shadow bytes around the buggy address: 0x7c4b08418100: fd fd fd fd fd fa fa fa fa fa fa fa fa fa fd fd 0x7c4b08418180: fd fd fd fd fd fd fd fd fd fd fd fa fa fa fa fa 0x7c4b08418200: fa fa fa fa fd fd fd fd fd fd fd fd fd fd fd fd 0x7c4b08418280: fd fa fa fa fa fa fa fa fa fa fd fd fd fd fd fd 0x7c4b08418300: fd fd fd fd fd fd fd fd fa fa fa fa fa fa fa fa =>0x7c4b08418380: 00 00 00 00 00 00 00 00 00 00 00 00[00]00 fa fa 0x7c4b08418400: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c4b08418480: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c4b08418500: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c4b08418580: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c4b08418600: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==2407028==ABORTING --- re-building ‘large-data.Rmd’ using rmarkdown ================================================================= ==2407954==ERROR: AddressSanitizer: unknown-crash on address 0x7c46cc3e5f25 at pc 0x7b86b9052645 bp 0x7fffa522e1b0 sp 0x7fffa522e1a8 READ of size 16 at 0x7c46cc3e5f25 thread T0 #0 0x7b86b9052644 in _mm_loadu_si128 /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 #1 0x7b86b9052644 in tdc_copy16 tdc/src/entropy/../core/simd.h:54 #2 0x7b86b9052644 in lz_decode_fast tdc/src/entropy/lz.c:821 #3 0x7b86b9052644 in lz_decode_core tdc/src/entropy/lz.c:960 #4 0x7b86b9052644 in lz_decode tdc/src/entropy/lz.c:996 #5 0x7b86b9052644 in lz_decode tdc/src/entropy/lz.c:991 #6 0x7b86b90083cc in driver_decode_block_impl tdc/src/api/decode_impl.c:252 #7 0x7b86b900a04c in tdc_decode_block_into tdc/src/api/decode_into.c:102 #8 0x7b86b8fcae71 in vtr_decode_column_tdc_into /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:345 #9 0x7b86b8fcb900 in vtr_decode_column_tdc /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:434 #10 0x7b86b8fcdf39 in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:845 #11 0x7b86b8fcf6cd in vtr1_read_rowgroup_tdc_ex /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:885 #12 0x7b86b8f615bf in scan_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:740 #13 0x7b86b8e690bf in vec_collect /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/collect.c:637 #14 0x0000007517c8 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #15 0x0000008ee872 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8678 #16 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #17 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #19 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #20 0x000000a9f503 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #21 0x000000a9f503 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #22 0x000000aa3300 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #23 0x000000aa5285 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #24 0x000000aa5ea6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #25 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #26 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #27 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #29 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #30 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #31 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #32 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x0000008ab8d1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #34 0x0000008ab8d1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5845 #35 0x0000008e7bdc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7858 #36 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #37 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #39 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #40 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #41 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #42 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #43 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #44 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #45 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #47 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #48 0x0000008a11e3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3996 #49 0x000000a9e2f6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #50 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #51 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #52 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #54 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #55 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #56 0x0000008ab8d1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #57 0x0000008ab8d1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5845 #58 0x0000008e7bdc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7858 #59 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #60 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #62 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #63 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #64 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #65 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #66 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #67 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #68 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #70 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #71 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #72 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #73 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #74 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #75 0x0000008ec865 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #76 0x0000008ec865 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8099 #77 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #78 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #80 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #81 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #82 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #83 0x000000a0b548 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #84 0x000000a0b548 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #85 0x000000a1a83a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #86 0x000000a1a8d2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #87 0x0000004130af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7f86cfa12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #89 0x7f86cfa12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #90 0x000000413a94 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a94) (BuildId: eec42e90eaa69a53110a23d0a12349ddd6cb1dae) 0x7c46cc3e5f34 is located 0 bytes after 116-byte region [0x7c46cc3e5ec0,0x7c46cc3e5f34) allocated by thread T0 here: #0 0x7f86d12e5e4b in realloc.part.0 (/lib64/libasan.so.8+0xe5e4b) (BuildId: d3cb6206dff19da52969c009f4cd93611901c478) #1 0x7b86b8fcdafb in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:810 #2 0x7b86b8fcf6cd in vtr1_read_rowgroup_tdc_ex /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:885 #3 0x7b86b8f615bf in scan_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:740 #4 0x7b86b8e690bf in vec_collect /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/collect.c:637 #5 0x0000007517c8 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #6 0x0000008ee872 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8678 #7 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #8 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #9 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #10 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #11 0x000000a9f503 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #12 0x000000a9f503 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #13 0x000000aa3300 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #14 0x000000aa5285 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #15 0x000000aa5ea6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #16 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #17 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #18 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #20 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #21 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #22 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #23 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #24 0x0000008ab8d1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #25 0x0000008ab8d1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5845 #26 0x0000008e7bdc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7858 #27 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #28 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #30 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #31 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #32 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 SUMMARY: AddressSanitizer: unknown-crash /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 in _mm_loadu_si128 Shadow bytes around the buggy address: 0x7c46cc3e5c80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7c46cc3e5d00: fa fa fa fa fa fa fa fa fd fd fd fd fd fd fd fd 0x7c46cc3e5d80: fd fd fd fd fd fd fd fd fa fa fa fa fa fa fa fa 0x7c46cc3e5e00: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7c46cc3e5e80: fa fa fa fa fa fa fa fa 00 00 00 00 00 00 00 00 =>0x7c46cc3e5f00: 00 00 00 00[00]00 04 fa fa fa fa fa fa fa fa fa 0x7c46cc3e5f80: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c46cc3e6000: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c46cc3e6080: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c46cc3e6100: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7c46cc3e6180: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==2407954==ABORTING --- re-building ‘quickstart.Rmd’ using rmarkdown ================================================================= ==2410338==ERROR: AddressSanitizer: unknown-crash on address 0x7cc2b59e845a at pc 0x7bf2a2452645 bp 0x7ffceb203230 sp 0x7ffceb203228 READ of size 16 at 0x7cc2b59e845a thread T0 #0 0x7bf2a2452644 in _mm_loadu_si128 /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 #1 0x7bf2a2452644 in tdc_copy16 tdc/src/entropy/../core/simd.h:54 #2 0x7bf2a2452644 in lz_decode_fast tdc/src/entropy/lz.c:821 #3 0x7bf2a2452644 in lz_decode_core tdc/src/entropy/lz.c:960 #4 0x7bf2a2452644 in lz_decode tdc/src/entropy/lz.c:996 #5 0x7bf2a2452644 in lz_decode tdc/src/entropy/lz.c:991 #6 0x7bf2a24083cc in driver_decode_block_impl tdc/src/api/decode_impl.c:252 #7 0x7bf2a240a04c in tdc_decode_block_into tdc/src/api/decode_into.c:102 #8 0x7bf2a23cae71 in vtr_decode_column_tdc_into /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:345 #9 0x7bf2a23cdd1d in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:841 #10 0x7bf2a23d10c0 in vtr1_read_parallel_tdc_into._omp_fn.0 /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:959 #11 0x7ff2ba062d65 in GOMP_parallel (/lib64/libgomp.so.1+0xdd65) (BuildId: 13e99b727b6e4d71c8e7ae903797ca388d84f6f3) #12 0x7bf2a23a8071 in vtr1_read_parallel_tdc_into /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:928 #13 0x7bf2a2269b50 in vec_collect /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/collect.c:507 #14 0x0000007517c8 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #15 0x0000008ee872 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8678 #16 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #17 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #19 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #20 0x000000a9f503 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #21 0x000000a9f503 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #22 0x000000aa3300 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #23 0x000000aa5285 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #24 0x000000aa5ea6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #25 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #26 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #27 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #29 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #30 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #31 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #32 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x0000008ab8d1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #34 0x0000008ab8d1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5845 #35 0x0000008e7bdc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7858 #36 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #37 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #38 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #39 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #40 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #41 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #42 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #43 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #44 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #45 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #47 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #48 0x0000008a11e3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3996 #49 0x000000a9e2f6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #50 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #51 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #52 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #53 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #54 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #55 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #56 0x0000008ab8d1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #57 0x0000008ab8d1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5845 #58 0x0000008e7bdc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7858 #59 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #60 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #61 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #62 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #63 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #64 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #65 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #66 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #67 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #68 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #70 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #71 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #72 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #73 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #74 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #75 0x0000008ec865 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #76 0x0000008ec865 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8099 #77 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #78 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #80 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #81 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #82 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #83 0x000000a0b548 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #84 0x000000a0b548 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #85 0x000000a1a83a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #86 0x000000a1a8d2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #87 0x0000004130af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #88 0x7ff2b9012574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #89 0x7ff2b9012627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #90 0x000000413a94 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a94) (BuildId: eec42e90eaa69a53110a23d0a12349ddd6cb1dae) 0x7cc2b59e8469 is located 0 bytes after 137-byte region [0x7cc2b59e83e0,0x7cc2b59e8469) allocated by thread T0 here: #0 0x7ff2ba8e5e4b in realloc.part.0 (/lib64/libasan.so.8+0xe5e4b) (BuildId: d3cb6206dff19da52969c009f4cd93611901c478) #1 0x7bf2a23cdafb in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:810 #2 0x7bf2a23d10c0 in vtr1_read_parallel_tdc_into._omp_fn.0 /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:959 #3 0x7ff2ba062d65 in GOMP_parallel (/lib64/libgomp.so.1+0xdd65) (BuildId: 13e99b727b6e4d71c8e7ae903797ca388d84f6f3) SUMMARY: AddressSanitizer: unknown-crash /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 in _mm_loadu_si128 Shadow bytes around the buggy address: 0x7cc2b59e8180: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fa 0x7cc2b59e8200: fa fa fa fa fa fa fa fa fd fd fd fd fd fd fd fd 0x7cc2b59e8280: fd fd fd fd fd fd fd fd fd fd fa fa fa fa fa fa 0x7cc2b59e8300: fa fa fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7cc2b59e8380: fd fd fd fa fa fa fa fa fa fa fa fa 00 00 00 00 =>0x7cc2b59e8400: 00 00 00 00 00 00 00 00 00 00 00[00]00 01 fa fa 0x7cc2b59e8480: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7cc2b59e8500: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7cc2b59e8580: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7cc2b59e8600: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7cc2b59e8680: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==2410338==ABORTING --- re-building ‘schema.Rmd’ using rmarkdown ================================================================= ==2411823==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x7bc294015313 at pc 0x7b1280c52645 bp 0x7fff5d7d39b0 sp 0x7fff5d7d39a8 READ of size 16 at 0x7bc294015313 thread T0 #0 0x7b1280c52644 in _mm_loadu_si128 /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 #1 0x7b1280c52644 in tdc_copy16 tdc/src/entropy/../core/simd.h:54 #2 0x7b1280c52644 in lz_decode_fast tdc/src/entropy/lz.c:821 #3 0x7b1280c52644 in lz_decode_core tdc/src/entropy/lz.c:960 #4 0x7b1280c52644 in lz_decode tdc/src/entropy/lz.c:996 #5 0x7b1280c52644 in lz_decode tdc/src/entropy/lz.c:991 #6 0x7b1280c083cc in driver_decode_block_impl tdc/src/api/decode_impl.c:252 #7 0x7b1280c0a04c in tdc_decode_block_into tdc/src/api/decode_into.c:102 #8 0x7b1280bcae71 in vtr_decode_column_tdc_into /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:345 #9 0x7b1280bcb900 in vtr_decode_column_tdc /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr_codec_tdc.c:434 #10 0x7b1280bcdf39 in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:845 #11 0x7b1280bcf6cd in vtr1_read_rowgroup_tdc_ex /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:885 #12 0x7b1280b615bf in scan_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:740 #13 0x7b1280b057cf in join_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/join.c:975 #14 0x7b1280b057cf in join_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/join.c:975 #15 0x7b1280b1daf0 in project_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/project.c:261 #16 0x7b1280a67027 in vec_collect /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/collect.c:839 #17 0x0000007517c8 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #18 0x0000008ee872 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8678 #19 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #20 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #22 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #23 0x000000a9f503 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #24 0x000000a9f503 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #25 0x000000aa3300 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #26 0x000000aa5285 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #27 0x000000aa5ea6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #28 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #29 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #30 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #32 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #33 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #34 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #35 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #36 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #37 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #38 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #39 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #40 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #41 0x0000008a11e3 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3996 #42 0x000000a9e2f6 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424 #43 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #44 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #45 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #47 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 #48 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #49 0x0000008ab8d1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #50 0x0000008ab8d1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5845 #51 0x0000008e7bdc in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7858 #52 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #53 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #54 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #55 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #56 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #57 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #58 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #59 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #60 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #61 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #62 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #63 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #64 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #65 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #66 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #67 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #68 0x0000008ec865 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #69 0x0000008ec865 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8099 #70 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #71 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #72 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #73 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #74 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #75 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #76 0x000000a0b548 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #77 0x000000a0b548 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #78 0x000000a1a83a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #79 0x000000a1a8d2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #80 0x0000004130af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #81 0x7f1297612574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #82 0x7f1297612627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #83 0x000000413a94 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413a94) (BuildId: eec42e90eaa69a53110a23d0a12349ddd6cb1dae) 0x7bc294015317 is located 0 bytes after 103-byte region [0x7bc2940152b0,0x7bc294015317) allocated by thread T0 here: #0 0x7f1298ee5e4b in realloc.part.0 (/lib64/libasan.so.8+0xe5e4b) (BuildId: d3cb6206dff19da52969c009f4cd93611901c478) #1 0x7b1280bcdafb in read_rg_tdc_with_fp /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:810 #2 0x7b1280bcf6cd in vtr1_read_rowgroup_tdc_ex /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/vtr1_tdc.c:885 #3 0x7b1280b615bf in scan_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/scan.c:740 #4 0x7b1280b057cf in join_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/join.c:975 #5 0x7b1280b057cf in join_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/join.c:975 #6 0x7b1280b1daf0 in project_next_batch /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/project.c:261 #7 0x7b1280a67027 in vec_collect /data/gannet/ripley/R/packages/tests-gcc-SAN/vectra/src/collect.c:839 #8 0x0000007517c8 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:754 #9 0x0000008ee872 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8678 #10 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #11 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #12 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #13 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #14 0x000000a9f503 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #15 0x000000a9f503 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #16 0x000000aa3300 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #17 0x000000aa5285 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #18 0x000000aa5ea6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #19 0x0000008e4f71 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8148 #20 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #21 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #22 0x00000087c64a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2387 #23 0x00000088063a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2300 #24 0x000000864513 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2322 #25 0x000000864513 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278 #26 0x00000089e2c1 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3953 #27 0x0000008d7d62 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8128 #28 0x0000008c4fa3 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7511 #29 0x000000863e62 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x000000930991 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #31 0x0000008654cc in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185 SUMMARY: AddressSanitizer: heap-buffer-overflow /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:707 in _mm_loadu_si128 Shadow bytes around the buggy address: 0x7bc294015080: fa fa fa fa 00 00 00 00 00 00 00 00 00 00 00 00 0x7bc294015100: 00 00 fa fa fa fa fa fa fa fa fd fd fd fd fd fd 0x7bc294015180: fd fd fd fd fd fd fd fa fa fa fa fa fa fa fa fa 0x7bc294015200: fd fd fd fd fd fd fd fd fd fd fd fd fd fa fa fa 0x7bc294015280: fa fa fa fa fa fa 00 00 00 00 00 00 00 00 00 00 =>0x7bc294015300: 00 00[07]fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7bc294015380: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7bc294015400: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7bc294015480: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7bc294015500: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7bc294015580: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==2411823==ABORTING --- re-building ‘string-ops.Rmd’ using rmarkdown --- finished re-building ‘string-ops.Rmd’ SUMMARY: processing the following files failed: ‘joins.Rmd’ ‘large-data.Rmd’ ‘quickstart.Rmd’ ‘schema.Rmd’ Error: Vignette re-building failed. Execution halted