* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/tcie.Rcheck’ * using R Under development (unstable) (2019-05-14 r76495) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘tcie/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘tcie’ version ‘0.3’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘tcie’ can be installed ... [94s/183s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking examples ... ERROR Running examples in ‘tcie-Ex.R’ failed The error most likely occurred in: > ### Name: Clipping > ### Title: Builds and plots the mesh representing the desired isosurface of > ### an specific region of the dataset > ### Aliases: Clipping > > ### ** Examples > > Clipping(system.file("extdata","f3.nhdr",package ="tcie"),0,FALSE,"red",1,TRUE,c(2,3),c(2,4),c(2,4)) ================================================================= ==36643==ERROR: AddressSanitizer: alloc-dealloc-mismatch (malloc vs operator delete []) on 0x60400001b7d0 #0 0x7f9edfba8cc8 in operator delete[](void*) (/lib64/libasan.so.5+0xf1cc8) #1 0x7f9eceb8193b in leaf_triangulation() /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/ExtendedMC.cpp:596 #2 0x7f9eceb9eb5b in find_topology() /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/ExtendedMC.cpp:1823 #3 0x7f9ecebaef38 in ExtendedRunMC(arma::Cube, float, int, int, int, float, float, float) /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/ExtendedMC.cpp:2600 #4 0x7f9ecec0346b in _tcie_ExtendedRunMC /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/RcppExports.cpp:23 #5 0x56c4d2 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:596 #6 0x62440c in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7283 #7 0x6462ef in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #8 0x64b9f5 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #9 0x64dfe8 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #10 0x62c2bb in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733 #11 0x6462ef in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620 #12 0x64b9f5 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1780 #13 0x64dfe8 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706 #14 0x6467f3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743 #15 0x6be3ce in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260 #16 0x6be3ce in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:200 #17 0x6bea80 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310 #18 0x6bebb4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1086 #19 0x418118 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #20 0x7f9edbf0d11a in __libc_start_main (/lib64/libc.so.6+0x2311a) #21 0x41a849 in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41a849) 0x60400001b7d0 is located 0 bytes inside of 48-byte region [0x60400001b7d0,0x60400001b800) allocated by thread T0 here: #0 0x7f9edfba6008 in malloc (/lib64/libasan.so.5+0xef008) #1 0x7f9eceb63a34 in Chull3D::get_convex_hull(float**, int*, int**, int*) /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/chull.cpp:130 #2 0x7f9eceb80ce5 in leaf_triangulation() /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/ExtendedMC.cpp:573 #3 0x7f9eceb9eb5b in find_topology() /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/ExtendedMC.cpp:1823 #4 0x7f9ecebaef38 in ExtendedRunMC(arma::Cube, float, int, int, int, float, float, float) /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/ExtendedMC.cpp:2600 #5 0x7f9ecec0346b in _tcie_ExtendedRunMC /data/gannet/ripley/R/packages/tests-gcc-SAN/tcie/src/RcppExports.cpp:23 #6 0x56c4d2 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:596 #7 0xe4800f in R_DeviceSymbol (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0xe4800f) SUMMARY: AddressSanitizer: alloc-dealloc-mismatch (/lib64/libasan.so.5+0xf1cc8) in operator delete[](void*) ==36643==HINT: if you don't care about these errors you may set ASAN_OPTIONS=alloc_dealloc_mismatch=0 ==36643==ABORTING * DONE Status: 1 ERROR