* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/sf.Rcheck’ * using R Under development (unstable) (2025-12-17 r89192) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘sf/DESCRIPTION’ ... OK * this is package ‘sf’ version ‘1.0-23’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘sf’ can be installed ... [8m/24m] WARNING Found the following significant warnings: Warning: src/Makevars: Unknown C++ standard ‘CXX’ was ignored See ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/sf.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... [6s/14s] OK * checking whether the package can be unloaded cleanly ... [6s/20s] OK * checking whether the namespace can be loaded with stated dependencies ... [6s/15s] OK * checking whether the namespace can be unloaded cleanly ... [7s/22s] OK * checking loading without being on the library search path ... [6s/25s] OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [173s/499s] OK * checking tests ... [14m/20m] NOTE Running ‘aggregate.R’ [9s/18s] Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ... OK Running ‘cast.R’ [17s/31s] Comparing ‘cast.Rout’ to ‘cast.Rout.save’ ... OK Running ‘crs.R’ [8s/15s] Comparing ‘crs.Rout’ to ‘crs.Rout.save’ ... OK Running ‘dist.R’ [9s/18s] Comparing ‘dist.Rout’ to ‘dist.Rout.save’ ... OK Running ‘dplyr.R’ [27s/57s] Comparing ‘dplyr.Rout’ to ‘dplyr.Rout.save’ ... OK Running ‘empty.R’ [8s/15s] Comparing ‘empty.Rout’ to ‘empty.Rout.save’ ... OK Running ‘full.R’ [13s/21s] Comparing ‘full.Rout’ to ‘full.Rout.save’ ... OK Running ‘gdal_geom.R’ [13s/29s] Comparing ‘gdal_geom.Rout’ to ‘gdal_geom.Rout.save’ ...244,248c244,248 < [1,] 1760242094 0.114 < [2,] 946426033 0.061 < [3,] 2202239126 0.143 < [4,] 1074338664 0.070 < [5,] 2352518951 0.153 --- > [1,] 1760230516 0.114 > [2,] 946417787 0.061 > [3,] 2202223078 0.143 > [4,] 1074332698 0.070 > [5,] 2352528086 0.153 Running ‘geos.R’ [216s/303s] Comparing ‘geos.Rout’ to ‘geos.Rout.save’ ...13,22c13,22 < [1,] 0.00 0.00 25652.42 440561.04 299772.09 361529.39 419671.11 < [2,] 0.00 0.00 0.00 409428.55 268944.32 332589.77 388544.57 < [3,] 25652.42 0.00 0.00 367555.46 227017.50 290297.11 346667.96 < [4,] 440561.04 409428.55 367555.46 0.00 67226.88 45537.78 0.00 < [5,] 299772.09 268944.32 227017.50 67226.88 0.00 0.00 46527.48 < [6,] 361529.39 332589.77 290297.11 45537.78 0.00 0.00 30213.34 < [7,] 419671.11 388544.57 346667.96 0.00 46527.48 30213.34 0.00 < [8,] 384592.69 354294.05 312350.59 16130.19 11926.78 0.00 0.00 < [9,] 262354.14 231217.46 189310.29 140455.85 0.00 64606.20 119563.76 < [10,] 71139.12 41943.86 0.00 330751.41 190182.42 252372.08 309862.03 --- > [1,] 0.00 0.00 25651.99 440561.48 299772.34 361529.73 419671.66 > [2,] 0.00 0.00 0.00 409429.44 268945.05 332590.52 388545.58 > [3,] 25651.99 0.00 0.00 367556.52 227018.38 290298.04 346669.14 > [4,] 440561.48 409429.44 367556.52 0.00 67226.86 45537.62 0.00 > [5,] 299772.34 268945.05 227018.38 67226.86 0.00 0.00 46527.56 > [6,] 361529.73 332590.52 290298.04 45537.62 0.00 0.00 30213.17 > [7,] 419671.66 388545.58 346669.14 0.00 46527.56 30213.17 0.00 > [8,] 384593.29 354295.06 312351.76 16130.19 11926.86 0.00 0.00 > [9,] 262353.97 231217.73 189310.73 140455.97 0.00 64606.27 119564.00 > [10,] 71138.53 41943.71 0.00 330752.58 190183.42 252373.26 309863.33 24,33c24,33 < [1,] 384592.69 262354.14 71139.12 < [2,] 354294.05 231217.46 41943.86 < [3,] 312350.59 189310.29 0.00 < [4,] 16130.19 140455.85 330751.41 < [5,] 11926.78 0.00 190182.42 < [6,] 0.00 64606.20 252372.08 < [7,] 0.00 119563.76 309862.03 < [8,] 0.00 85533.06 275389.73 < [9,] 85533.06 0.00 152488.90 < [10,] 275389.73 152488.90 0.00 --- > [1,] 384593.29 262353.97 71138.53 > [2,] 354295.06 231217.73 41943.71 > [3,] 312351.76 189310.73 0.00 > [4,] 16130.19 140455.97 330752.58 > [5,] 11926.86 0.00 190183.42 > [6,] 0.00 64606.27 252373.26 > [7,] 0.00 119564.00 309863.33 > [8,] 0.00 85533.33 275391.07 > [9,] 85533.33 0.00 152489.45 > [10,] 275391.07 152489.45 0.00 Running ‘graticule.R’ [25s/35s] Comparing ‘graticule.Rout’ to ‘graticule.Rout.save’ ... OK Running ‘grid.R’ [12s/18s] Comparing ‘grid.Rout’ to ‘grid.Rout.save’ ... OK Running ‘maps.R’ [15s/23s] Comparing ‘maps.Rout’ to ‘maps.Rout.save’ ... OK Running ‘plot.R’ [46s/63s] Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK Running ‘read.R’ [19s/26s] Comparing ‘read.Rout’ to ‘read.Rout.save’ ... OK Running ‘roundtrip.R’ [15s/23s] Comparing ‘roundtrip.Rout’ to ‘roundtrip.Rout.save’ ... OK Running ‘s2.R’ [18s/29s] Comparing ‘s2.Rout’ to ‘s2.Rout.save’ ... OK Running ‘sample.R’ Comparing ‘sample.Rout’ to ‘sample.Rout.save’ ... OK Running ‘sfc.R’ [103s/135s] Comparing ‘sfc.Rout’ to ‘sfc.Rout.save’ ...610c610 < Bounding box: xmin: 406261.8 ymin: 48374.95 xmax: 3052888 ymax: 1044157 --- > Bounding box: xmin: 406265 ymin: 48359.7 xmax: 3052877 ymax: 1044143 625,629c625,629 < 1 10 1364 0 19 A 4 #fb80724d MULTIPOLYGON (((1270815 913... < 2 10 542 3 12 A 4 #fb80724d MULTIPOLYGON (((1340555 959... < 3 208 3616 6 260 A 5 #80b1d34d MULTIPOLYGON (((1570591 910... < 4 123 830 2 145 A 10 #bc80bd4d MULTIPOLYGON (((2881208 948... < 5 1066 1606 3 1197 A 8 #fccde54d MULTIPOLYGON (((2525701 911... --- > 1 10 1364 0 19 A 4 #fb80724d MULTIPOLYGON (((1270813 913... > 2 10 542 3 12 A 4 #fb80724d MULTIPOLYGON (((1340553 959... > 3 208 3616 6 260 A 5 #80b1d34d MULTIPOLYGON (((1570586 910... > 4 123 830 2 145 A 10 #bc80bd4d MULTIPOLYGON (((2881206 948... > 5 1066 1606 3 1197 A 8 #fccde54d MULTIPOLYGON (((2525700 911... 631,634c631,634 < 7 115 350 2 139 A 10 #bc80bd4d MULTIPOLYGON (((2881208 948... < 8 254 594 2 371 A 9 #d9d9d94d MULTIPOLYGON (((2717989 951... < 9 748 1190 2 844 A 8 #fccde54d MULTIPOLYGON (((2203890 914... < 10 160 2038 5 176 A 5 #80b1d34d MULTIPOLYGON (((1697623 911... --- > 7 115 350 2 139 A 10 #bc80bd4d MULTIPOLYGON (((2881206 948... > 8 254 594 2 371 A 9 #d9d9d94d MULTIPOLYGON (((2717988 951... > 9 748 1190 2 844 A 8 #fccde54d MULTIPOLYGON (((2203888 914... > 10 160 2038 5 176 A 5 #80b1d34d MULTIPOLYGON (((1697618 911... 717c717 < Bounding box: xmin: 1216510 ymin: 935867 xmax: 1428880 ymax: 1031510 --- > Bounding box: xmin: 1216510 ymin: 935852 xmax: 1428880 ymax: 1031490 720,724c720,724 < POINT (1264559 935867) < POINT (1256623 949384) < POINT (1222665 972639) < POINT (1333530 968278) < POINT (1310838 958645) --- > POINT (1264558 935852) > POINT (1256623 949369) > POINT (1222665 972624) > POINT (1333528 968263) > POINT (1310837 958630) 734c734 < Bounding box: xmin: -81.6893 ymin: 36.2492 xmax: -80.914 ymax: 36.5726 --- > Bounding box: xmin: -81.6893 ymin: 36.2491 xmax: -80.914 ymax: 36.5726 Running ‘sfg.R’ Comparing ‘sfg.Rout’ to ‘sfg.Rout.save’ ... OK Running ‘spatstat.R’ [31s/41s] Comparing ‘spatstat.Rout’ to ‘spatstat.Rout.save’ ... OK Running ‘stars.R’ [28s/35s] Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ...294c294,296 < "nodata_value": 0 --- > "nodata_value": 0, > "structural_info": { > "COMPRESSOR": "{ \"blocksize\": 0, \"clevel\": 5, \"cname\": \"lz4\", \"id\": \"blosc\", \"shuffle\": 1 }" 297c299,300 < }[1] "{\n \"type\": \"group\",\n \"driver\": \"Zarr\",\n \"name\": \"/\",\n \"arrays\": {\n \"ones\": {\n \"datatype\": \"Int32\",\n \"dimensions\": [\n {\n \"name\": \"dim0\",\n \"full_name\": \"dim0\",\n \"size\": 100\n },\n {\n \"name\": \"dim1\",\n \"full_name\": \"dim1\",\n \"size\": 100\n }\n ],\n \"dimension_size\": [\n 100,\n 100\n ],\n \"block_size\": [\n 50,\n 50\n ],\n \"nodata_value\": 0\n }\n }\n}" --- > } > }[1] "{\n \"type\": \"group\",\n \"driver\": \"Zarr\",\n \"name\": \"/\",\n \"arrays\": {\n \"ones\": {\n \"datatype\": \"Int32\",\n \"dimensions\": [\n {\n \"name\": \"dim0\",\n \"full_name\": \"dim0\",\n \"size\": 100\n },\n {\n \"name\": \"dim1\",\n \"full_name\": \"dim1\",\n \"size\": 100\n }\n ],\n \"dimension_size\": [\n 100,\n 100\n ],\n \"block_size\": [\n 50,\n 50\n ],\n \"nodata_value\": 0,\n \"structural_info\": {\n \"COMPRESSOR\": \"{ \\\"blocksize\\\": 0, \\\"clevel\\\": 5, \\\"cname\\\": \\\"lz4\\\", \\\"id\\\": \\\"blosc\\\", \\\"shuffle\\\": 1 }\"\n }\n }\n }\n}" Running ‘testthat.R’ [147s/203s] Running ‘units.R’ Comparing ‘units.Rout’ to ‘units.Rout.save’ ... OK Running ‘wkb.R’ Comparing ‘wkb.Rout’ to ‘wkb.Rout.save’ ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [376s/450s] OK * DONE Status: 1 WARNING, 1 NOTE