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Type 'q()' to quit R. > library(testthat) > > test_check("poLCAParallel") Loading required package: poLCAParallel ================================================================= ==3669598==ERROR: AddressSanitizer: stack-use-after-scope on address 0x7b4d757b8290 at pc 0x7b4d65102482 bp 0x7ffd918e15d0 sp 0x7ffd918e15c8 READ of size 8 at 0x7b4d757b8290 thread T0 #0 0x7b4d65102481 in arma::Proxy >::get_n_rows() const /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Proxy.hpp:226 #1 0x7b4d65102481 in arma::eGlue, arma::Col, arma::eglue_schur>::get_n_rows() const /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/eGlue_meat.hpp:68 #2 0x7b4d65102481 in arma::Proxy, arma::Col, arma::eglue_schur> >::get_n_rows() const /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Proxy.hpp:414 #3 0x7b4d65102481 in arma::eGlue, arma::Col, arma::eglue_schur>, arma::eGlue, arma::Col, arma::eglue_schur>, arma::eglue_minus>::get_n_rows() const /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/eGlue_meat.hpp:68 #4 0x7b4d65102481 in arma::Mat::Mat, arma::Col, arma::eglue_schur>, arma::eGlue, arma::Col, arma::eglue_schur>, arma::eglue_minus>(arma::eGlue, arma::Col, arma::eglue_schur>, arma::eGlue, arma::Col, arma::eglue_schur>, arma::eglue_minus> const&, arma::arma_vec_indicator const&, unsigned short) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:6406 #5 0x7b4d65102481 in arma::Col::Col, arma::Col, arma::eglue_schur>, arma::eGlue, arma::Col, arma::eglue_schur>, arma::eglue_minus> >(arma::Base, arma::Col, arma::eglue_schur>, arma::eGlue, arma::Col, arma::eglue_schur>, arma::eglue_minus> > const&) /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Col_meat.hpp:524 #6 0x7b4d65102481 in polca_parallel::EmAlgorithmRegress::CalcHessSubBlock(unsigned long, unsigned long) /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm_regress.cc:197 #7 0x7b4d651078f8 in polca_parallel::EmAlgorithmRegress::CalcHess() /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm_regress.cc:149 #8 0x7b4d650e19b4 in polca_parallel::EmAlgorithmRegress::MStep() /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm_regress.cc:94 #9 0x7b4d650819d8 in polca_parallel::EmAlgorithm::Fit() /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm.cc:130 #10 0x7b4d650a93dc in void polca_parallel::EmAlgorithmArray::FitThread() /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm_array.cc:169 #11 0x7b4d650ad6ea in void polca_parallel::EmAlgorithmArray::Fit() /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm_array.cc:89 #12 0x7b4d650dd575 in EmAlgorithmRcpp(Rcpp::Matrix<14, Rcpp::PreserveStorage>, Rcpp::Matrix<13, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, unsigned long, unsigned long, Rcpp::Vector<13, Rcpp::PreserveStorage>, unsigned long, unsigned long, bool, unsigned long, unsigned int, double, Rcpp::Vector<13, Rcpp::PreserveStorage>) /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm_rcpp.cc:138 #13 0x7b4d65044379 in _poLCAParallel_EmAlgorithmRcpp /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/RcppExports.cpp:55 #14 0x00000074fd76 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:807 #15 0x0000008e661a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8682 #16 0x0000008bce5b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #17 0x00000085d782 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #18 0x0000008734ca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #19 0x0000008774ba in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #20 0x00000085de23 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #21 0x00000085de23 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #22 0x00000088bc6e in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581 #23 0x00000085e246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #24 0x000000871ccb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #25 0x00000085e246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #26 0x0000008734ca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #27 0x0000008774ba in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #28 0x00000085de23 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #29 0x00000085de23 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #30 0x00000073b9ea in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573 #31 0x0000008cfc12 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #32 0x0000008bce5b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #33 0x00000085d782 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x0000008734ca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #35 0x0000008774ba in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #36 0x00000085de23 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #37 0x00000085de23 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #38 0x000000871ccb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #39 0x00000085e246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #40 0x00000087d8ff in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2874 #41 0x00000085e246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #42 0x000000871ccb in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992 #43 0x00000085e246 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #44 0x000000893211 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #45 0x0000008cfc12 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #46 0x0000008bce5b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #47 0x00000085d782 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #48 0x0000008734ca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #49 0x0000008774ba in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #50 0x00000085de23 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #51 0x00000085de23 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #52 0x000000894303 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3973 #53 0x0000008cfc12 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #54 0x0000008bce5b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #55 0x00000085d782 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #56 0x0000008734ca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #57 0x0000008774ba in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #58 0x000000878dd7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #59 0x000000878dd7 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2456 #60 0x00000049a216 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75 #61 0x000000a96306 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #62 0x0000008dce21 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152 #63 0x0000008bce5b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #64 0x00000085d782 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #65 0x0000008734ca in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #66 0x0000008774ba in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #67 0x00000085de23 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #68 0x00000085de23 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #69 0x000000a028c8 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #70 0x000000a028c8 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #71 0x000000a10c2a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #72 0x000000a10cc2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #73 0x00000041317f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #74 0x7f4d79c115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #75 0x7f4d79c116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #76 0x000000413b64 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b64) (BuildId: 0d40351ce159fd440cf1bc86fd80966731bca401) Address 0x7b4d757b8290 is located in stack of thread T0 at offset 656 in frame #0 0x7b4d650f695f in polca_parallel::EmAlgorithmRegress::CalcHessSubBlock(unsigned long, unsigned long) /data/gannet/ripley/R/packages/tests-gcc-SAN/poLCAParallel/src/em_algorithm_regress.cc:155 This frame has 29 object(s): [32, 33) '' [48, 56) '__x' (line 154) [80, 88) '__x' (line 154) [112, 120) 'dest' (line 154) [144, 152) 'dest' (line 154) [176, 184) 'out_mem' [208, 216) 'mem_aligned' [240, 248) 'mem_aligned' [272, 280) 'mem_aligned' [304, 312) 'mem_aligned' [336, 344) 'mem_aligned' [368, 376) 'mem_aligned' [400, 408) 'mem_aligned' [432, 440) 'mem_aligned' [464, 472) 'mem_aligned' [496, 504) 'mem_aligned' [528, 536) 'mem_aligned' [560, 568) 'mem_aligned' [592, 608) 'prior_post_inter' (line 191) [624, 640) '' [656, 672) '' <== Memory access at offset 656 is inside this variable [688, 720) '' [752, 784) '' [816, 848) '' [880, 1056) 'prior1' (line 179) [1120, 1296) 'posterior1' (line 172) [1360, 1536) 'prior0' (line 164) [1600, 1776) 'posterior0' (line 163) [1840, 2016) '' HINT: this may be a false positive if your program uses some custom stack unwind mechanism, swapcontext or vfork (longjmp and C++ exceptions *are* supported) SUMMARY: AddressSanitizer: stack-use-after-scope /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Proxy.hpp:226 in arma::Proxy >::get_n_rows() const Shadow bytes around the buggy address: 0x7b4d757b8000: f1 f1 f1 f1 01 f2 00 f2 f2 f2 00 f2 f2 f2 00 f2 0x7b4d757b8080: f2 f2 00 f2 f2 f2 00 f2 f2 f2 00 f2 f2 f2 00 f2 0x7b4d757b8100: f2 f2 00 f2 f2 f2 00 f2 f2 f2 00 f2 f2 f2 00 f2 0x7b4d757b8180: f2 f2 00 f2 f2 f2 00 f2 f2 f2 00 f2 f2 f2 00 f2 0x7b4d757b8200: f2 f2 00 f2 f2 f2 00 f2 f2 f2 00 00 f2 f2 f8 f8 =>0x7b4d757b8280: f2 f2[f8]f8 f2 f2 00 00 00 00 f2 f2 f2 f2 00 00 0x7b4d757b8300: 00 00 f2 f2 f2 f2 00 00 00 00 f2 f2 f2 f2 00 00 0x7b4d757b8380: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7b4d757b8400: 00 00 00 00 f2 f2 f2 f2 f2 f2 f2 f2 00 00 00 00 0x7b4d757b8480: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7b4d757b8500: 00 00 f2 f2 f2 f2 f2 f2 f2 f2 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==3669598==ABORTING