* using log directory ‘/data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx.Rcheck’ * using R Under development (unstable) (2026-09-22 r90584) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-09-23 02:13:06 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘nonmem2rx/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘nonmem2rx’ version ‘0.1.11’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘nonmem2rx’ can be installed ... [71s/110s] OK * used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking whether the package can be loaded ... [6s/11s] OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... [6s/10s] OK * checking loading without being on the library search path ... [5s/10s] OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [17s/29s] OK * checking tests ... [61s/101s] ERROR Running ‘testthat.R’ [60s/99s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(nonmem2rx) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/backref.cpp:153:21: runtime error: index 1 out of bounds for type 'BackRefBlock *[1]' #0 0x7b7f77c125a3 in rml::internal::BackRefMain::initEmptyBackRefBlock(rml::internal::BackRefBlock*) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/backref.cpp:153 #1 0x7b7f77c3ba87 in rml::internal::initBackRefMain(rml::internal::Backend*) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/backref.cpp:113 #2 0x7b7f77c3ba87 in initMemoryManager /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/frontend.cpp:2051 #3 0x7b7f77c3ba87 in doInitialization /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/frontend.cpp:2077 #4 0x7b7f77c402db in allocateAligned /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/frontend.cpp:2374 #5 0x7b7f77c50620 in scalable_aligned_malloc /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/frontend.cpp:3115 #6 0x7b7f77c50620 in scalable_aligned_malloc /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbbmalloc/frontend.cpp:3109 #7 0x7b7f78029d02 in tbb::detail::r1::cache_aligned_allocate(unsigned long) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/allocator.cpp:200 #8 0x7b7f780baed1 in tbb::detail::r1::global_control_acquire() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/global_control.cpp:148 #9 0x7b7f780baed1 in tbb::detail::r1::governor::acquire_resources() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.cpp:73 #10 0x7b7f780baed1 in tbb::detail::r1::__TBB_InitOnce::add_ref() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/main.cpp:81 #11 0x7b7f7800cf7b in _sub_I_65535_0.0 (/data/localhost/ripley/R/test-gcc-SAN/RcppParallel/lib/libtbb.so.2+0xcf7b) (BuildId: 442c5aaf9936f107e9318baaa1efc407686d7487) #12 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:74 #13 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:26 #14 0x7f7f8a2844cc in _dl_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:121 #15 0x7f7f8a2807d6 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:215 #16 0x7f7f8a28b598 in dl_open_worker /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:799 #17 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #18 0x7f7f8a28ba69 in _dl_open /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:900 #19 0x7f7f882760c3 in dlopen_doit (/lib64/libc.so.6+0x6f0c3) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #20 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #21 0x7f7f8a280878 in _dl_catch_error /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:260 #22 0x7f7f88275bb2 in _dlerror_run (/lib64/libc.so.6+0x6ebb2) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #23 0x7f7f8827617a in ___dlopen (/lib64/libc.so.6+0x6f17a) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #24 0x7f7f89a55277 in dlopen.part.0 (/lib64/libasan.so.8+0x55277) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #25 0x000000420339 in loadLibrary /data/localhost/ripley/R/svn/R-devel/src/unix/dynload.c:83 #26 0x000000420339 in AddDLL /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:874 #27 0x000000425b09 in do_dynload /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:1248 #28 0x0000008ed81b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #29 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #30 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #31 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #32 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #33 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #34 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #35 0x000000a218f8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #36 0x000000a218f8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #37 0x000000a3f5ba in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #38 0x000000a3f652 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #39 0x0000004120cf in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #40 0x7f7f8820a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #41 0x7f7f8820a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #42 0x000000412a94 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412a94) (BuildId: 73745f6757c13949f007329970b5fec9cc6544b8) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:270:19: runtime error: index 1 out of bounds for type 'arena_slot [1]' #0 0x7b7f7805a507 in tbb::detail::r1::arena::arena(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:270 #1 0x7b7f7805a507 in tbb::detail::r1::arena::allocate_arena(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:293 #2 0x7b7f7805a507 in tbb::detail::r1::arena::create(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int, tbb::detail::d1::constraints) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:450 #3 0x7b7f7807dce1 in tbb::detail::r1::governor::init_external_thread() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.cpp:216 #4 0x7b7f780e7047 in tbb::detail::r1::governor::get_thread_data() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.h:104 #5 0x7b7f780e7047 in tbb::detail::r1::governor::get_thread_data() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.h:99 #6 0x7b7f780e7047 in tbb::detail::r1::observe(tbb::detail::d1::task_scheduler_observer&, bool) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/observer_proxy.cpp:271 #7 0x7b7f66126d98 (/data/localhost/ripley/R/test-gcc-SAN/rxode2/libs/rxode2.so+0x126d98) (BuildId: 8db00cfc4452fe4189992094243209915581d832) #8 0x7b7f66129195 (/data/localhost/ripley/R/test-gcc-SAN/rxode2/libs/rxode2.so+0x129195) (BuildId: 8db00cfc4452fe4189992094243209915581d832) #9 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:74 #10 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:26 #11 0x7f7f8a2844cc in _dl_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:121 #12 0x7f7f8a2807d6 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:215 #13 0x7f7f8a28b598 in dl_open_worker /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:799 #14 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #15 0x7f7f8a28ba69 in _dl_open /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:900 #16 0x7f7f882760c3 in dlopen_doit (/lib64/libc.so.6+0x6f0c3) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #17 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #18 0x7f7f8a280878 in _dl_catch_error /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:260 #19 0x7f7f88275bb2 in _dlerror_run (/lib64/libc.so.6+0x6ebb2) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #20 0x7f7f8827617a in ___dlopen (/lib64/libc.so.6+0x6f17a) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #21 0x7f7f89a55277 in dlopen.part.0 (/lib64/libasan.so.8+0x55277) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #22 0x000000420339 in loadLibrary /data/localhost/ripley/R/svn/R-devel/src/unix/dynload.c:83 #23 0x000000420339 in AddDLL /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:874 #24 0x000000425b09 in do_dynload /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:1248 #25 0x0000008ed81b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #30 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #32 0x000000a218f8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #33 0x000000a218f8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #34 0x000000a3f5ba in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #35 0x000000a3f652 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #36 0x0000004120cf in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #37 0x7f7f8820a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #38 0x7f7f8820a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #39 0x000000412a94 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412a94) (BuildId: 73745f6757c13949f007329970b5fec9cc6544b8) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:271:19: runtime error: index 1 out of bounds for type 'arena_slot [1]' #0 0x7b7f7805aeb1 in tbb::detail::r1::arena::arena(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:271 #1 0x7b7f7805aeb1 in tbb::detail::r1::arena::allocate_arena(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:293 #2 0x7b7f7805aeb1 in tbb::detail::r1::arena::create(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int, tbb::detail::d1::constraints) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:450 #3 0x7b7f7807dce1 in tbb::detail::r1::governor::init_external_thread() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.cpp:216 #4 0x7b7f780e7047 in tbb::detail::r1::governor::get_thread_data() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.h:104 #5 0x7b7f780e7047 in tbb::detail::r1::governor::get_thread_data() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.h:99 #6 0x7b7f780e7047 in tbb::detail::r1::observe(tbb::detail::d1::task_scheduler_observer&, bool) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/observer_proxy.cpp:271 #7 0x7b7f66126d98 (/data/localhost/ripley/R/test-gcc-SAN/rxode2/libs/rxode2.so+0x126d98) (BuildId: 8db00cfc4452fe4189992094243209915581d832) #8 0x7b7f66129195 (/data/localhost/ripley/R/test-gcc-SAN/rxode2/libs/rxode2.so+0x129195) (BuildId: 8db00cfc4452fe4189992094243209915581d832) #9 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:74 #10 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:26 #11 0x7f7f8a2844cc in _dl_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:121 #12 0x7f7f8a2807d6 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:215 #13 0x7f7f8a28b598 in dl_open_worker /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:799 #14 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #15 0x7f7f8a28ba69 in _dl_open /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:900 #16 0x7f7f882760c3 in dlopen_doit (/lib64/libc.so.6+0x6f0c3) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #17 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #18 0x7f7f8a280878 in _dl_catch_error /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:260 #19 0x7f7f88275bb2 in _dlerror_run (/lib64/libc.so.6+0x6ebb2) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #20 0x7f7f8827617a in ___dlopen (/lib64/libc.so.6+0x6f17a) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #21 0x7f7f89a55277 in dlopen.part.0 (/lib64/libasan.so.8+0x55277) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #22 0x000000420339 in loadLibrary /data/localhost/ripley/R/svn/R-devel/src/unix/dynload.c:83 #23 0x000000420339 in AddDLL /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:874 #24 0x000000425b09 in do_dynload /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:1248 #25 0x0000008ed81b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #30 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #32 0x000000a218f8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #33 0x000000a218f8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #34 0x000000a3f5ba in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #35 0x000000a3f652 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #36 0x0000004120cf in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #37 0x7f7f8820a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #38 0x7f7f8820a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #39 0x000000412a94 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412a94) (BuildId: 73745f6757c13949f007329970b5fec9cc6544b8) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:269:19: runtime error: index 2 out of bounds for type 'arena_slot [1]' #0 0x7b7f7805ab53 in tbb::detail::r1::arena::arena(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:269 #1 0x7b7f7805ab53 in tbb::detail::r1::arena::allocate_arena(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:293 #2 0x7b7f7805ab53 in tbb::detail::r1::arena::create(tbb::detail::r1::threading_control*, unsigned int, unsigned int, unsigned int, tbb::detail::d1::constraints) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/arena.cpp:450 #3 0x7b7f7807dce1 in tbb::detail::r1::governor::init_external_thread() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.cpp:216 #4 0x7b7f780e7047 in tbb::detail::r1::governor::get_thread_data() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.h:104 #5 0x7b7f780e7047 in tbb::detail::r1::governor::get_thread_data() /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/governor.h:99 #6 0x7b7f780e7047 in tbb::detail::r1::observe(tbb::detail::d1::task_scheduler_observer&, bool) /tmp/RtmpmhR8Xk/R.INSTALL12cd6c1d3b2615/RcppParallel/src/tbb/src/tbb/observer_proxy.cpp:271 #7 0x7b7f66126d98 (/data/localhost/ripley/R/test-gcc-SAN/rxode2/libs/rxode2.so+0x126d98) (BuildId: 8db00cfc4452fe4189992094243209915581d832) #8 0x7b7f66129195 (/data/localhost/ripley/R/test-gcc-SAN/rxode2/libs/rxode2.so+0x129195) (BuildId: 8db00cfc4452fe4189992094243209915581d832) #9 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:74 #10 0x7f7f8a2843ee in call_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:26 #11 0x7f7f8a2844cc in _dl_init /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-init.c:121 #12 0x7f7f8a2807d6 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:215 #13 0x7f7f8a28b598 in dl_open_worker /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:799 #14 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #15 0x7f7f8a28ba69 in _dl_open /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-open.c:900 #16 0x7f7f882760c3 in dlopen_doit (/lib64/libc.so.6+0x6f0c3) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #17 0x7f7f8a280728 in __GI__dl_catch_exception /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:241 #18 0x7f7f8a280878 in _dl_catch_error /usr/src/debug/glibc-2.43-8.fc44.x86_64/elf/dl-catch.c:260 #19 0x7f7f88275bb2 in _dlerror_run (/lib64/libc.so.6+0x6ebb2) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #20 0x7f7f8827617a in ___dlopen (/lib64/libc.so.6+0x6f17a) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #21 0x7f7f89a55277 in dlopen.part.0 (/lib64/libasan.so.8+0x55277) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #22 0x000000420339 in loadLibrary /data/localhost/ripley/R/svn/R-devel/src/unix/dynload.c:83 #23 0x000000420339 in AddDLL /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:874 #24 0x000000425b09 in do_dynload /data/localhost/ripley/R/svn/R-devel/src/main/Rdynload.c:1248 #25 0x0000008ed81b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #26 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #27 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #28 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #29 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #30 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #31 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #32 0x000000a218f8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #33 0x000000a218f8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #34 0x000000a3f5ba in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #35 0x000000a3f652 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #36 0x0000004120cf in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #37 0x7f7f8820a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #38 0x7f7f8820a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #39 0x000000412a94 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412a94) (BuildId: 73745f6757c13949f007329970b5fec9cc6544b8) > library(rxode2) rxode2 5.1.7 using 2 threads (see ?getRxThreads) no cache: create with `rxCreateCache()` > setRxThreads(1L) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > setDTthreads(1L) > > > test_check("nonmem2rx") $ABBREV record syntax error error: ================================================================================ :ERR: will not change var type from 'EPS' to 'THETA': :001: REPLACE EPS(ECL)=THETA(4) ================================================================================ :ERR: will not change var type from 'THETA' to 'ETA': :001: REPLACE THETA(CL,V1,Q,V2)=ETA(1,2,3,4) ================================================================================ :ERR: 'MOD' function not supported in translation: :001: CL = MOD(C) ================================================================================ :ERR: 'INT' function not supported in translation: :001: CL = INT(C) ================================================================================ :ERR: 'A#' NONMEM reserved variable is not translated: :001: CL = A12345 ================================================================================ :ERR: 'C#' NONMEM reserved variable is not translated: :001: CL = C12345 ================================================================================ :ERR: 'COMACT' NONMEM reserved variable is not translated: :001: A = COMACT ================================================================================ :ERR: 'COMSAV' NONMEM reserved variable is not translated: :001: A = COMSAV ================================================================================ :ERR: 'CALL PASS(MODE)' statements not supported in translation: :001: CALL PASS(MODE) ================================================================================ :ERR: 'CALL SUPP(# , #)' statements not supported in translation: :001: CALL SUPP(0 , 1) ================================================================================ :ERR: DT(#) not supported in translation: :001: C=DT(3) ================================================================================ :ERR: MNEXT(#) not supported in translation: :001: C=MNEXT(3) ================================================================================ :ERR: PCMT(#) not supported in translation: :001: C=PCMT(3) ================================================================================ :ERR: DA(#, #) not supported in translation: :001: DA(1, 2) = -KEL*A(1) ================================================================================ :ERR: DP(#, #) not supported in translation: :001: DP(1, 2) = -KEL*A(1) ================================================================================ :ERR: 'TSCALE' NONMEM reserved variable is not translated: :001: TSCALE = 4 ================================================================================ :ERR: 'XSCALE' NONMEM reserved variable is not translated: :001: XSCALE = 4 ================================================================================ :ERR: 'CALL GETETA(ETA)' not supported in translation: :001: CALL GETETA(ETA) ================================================================================ $PRED syntax error: :001: , ^ ================================================================================ :ERR: can only request depot and central compartments for solved systems in rxode2 translations: :001: f3=1 ================================================================================ :ERR: can only request depot and central compartments for solved systems in rxode2 translations: :001: f3=1 ================================================================================ :ERR: F0/FO is not supported in translation: :001: F0=3 ================================================================================ i getting information from '/data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx.Rcheck/nonmem2rx/TheopdExt.ctl' i reading in lst file i seeing if file argument is actually lst file i not list file, control stream i done i splitting control stream by records i done i Processing record $INPUT i Processing record $gTHETA i Processing record $OMEGA i Processing record $SIGMA i Processing record $PROBLEM i Processing record $DATA i Processing record $ESTIMATION i Ignore record $ESTIMATION i Processing record $COVARIANCE i Ignore record $COVARIANCE i Processing record $PRED i Processing record $TABLE i final parameters not updated, will skip validation i changing most variables to lower case i done i replace theta names i done i replace eta names i done i getting information from '/data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx.Rcheck/nonmem2rx/Theopd.ctl' i reading in lst file i seeing if file argument is actually lst file i not list file, control stream i done i splitting control stream by records i done i Processing record $INPUT i Processing record $gTHETA i Processing record $OMEGA i Processing record $SIGMA i Processing record $PROBLEM i Processing record $DATA i Processing record $ESTIMATION i Ignore record $ESTIMATION i Processing record $COVARIANCE i Ignore record $COVARIANCE i Processing record $PRED i Processing record $TABLE i final parameters not updated, will skip validation i changing most variables to lower case i done i replace theta names i done i replace eta names i done i getting information from '/tmp/Rtmpo2ufV6/file3784726f7c94.ctl' i reading in lst file i seeing if file argument is actually lst file i not list file, control stream i done i splitting control stream by records i done i Processing record $INPUT i Processing record $ABBREVITED i Processing record $gTHETA i Processing record $OMEGA i Processing record $SIGMA i Processing record $PROBLEM i Processing record $DATA i Processing record $SUBROUTINES i Processing record $PK i Processing record $ERROR i Processing record $ESTIMATION i Ignore record $ESTIMATION i Processing record $TABLE i final parameters not updated, will skip validation i changing most variables to lower case i done i replace theta names i done i replace eta names i done i getting information from '/tmp/Rtmpo2ufV6/file37846a4d65b8.ctl' i reading in lst file i seeing if file argument is actually lst file i not list file, control stream i done i splitting control stream by records i done i Processing record $INPUT i Processing record $ABBREVITED i Processing record $gTHETA i Processing record $OMEGA i Processing record $SIGMA i Processing record $PROBLEM i Processing record $DATA i Processing record $SUBROUTINES i Processing record $PK i Processing record $ERROR i Processing record $ESTIMATION i Ignore record $ESTIMATION i Processing record $TABLE i final parameters not updated, will skip validation i changing most variables to lower case i done i replace theta names i done i replace eta names i done i $DATA format (3F10.0,2(1X,F5.0)) ignored; data read as delimited i $DATA NOOPEN: data file is not opened by NM-TRAN i $DATA PRED_IGNORE_DATA is not applied when reading input data $DATA syntax error: :001: file.csv IGNORE=(A-EQ-1) ^ ================================================================================ $DATA syntax error: :001: file.csv ACCEPT=(A.EQ.1) (3F10.0) ^ ================================================================================ i $DATA format (3F10.0, 2F5.0) ignored; data read as delimited $DATA syntax error: :001: matt.csv matt=.csv ^ ================================================================================ ================================================================= ==14212==ERROR: AddressSanitizer: heap-use-after-free on address 0x7e5f86578c04 at pc 0x7f7f89a965e0 bp 0x7ffd5ffb81b0 sp 0x7ffd5ffb7970 READ of size 7 at 0x7e5f86578c04 thread T0 #0 0x7f7f89a965df in printf_common(void*, char const*, __va_list_tag*) (/lib64/libasan.so.8+0x965df) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #1 0x7f7f89ab719a in vfprintf (/lib64/libasan.so.8+0xb719a) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #2 0x000000bda217 in Rvprintf /data/localhost/ripley/R/svn/R-devel/src/main/printutils.c:993 #3 0x000000bda7cf in Rprintf /data/localhost/ripley/R/svn/R-devel/src/main/printutils.c:906 #4 0x7b7f6463d364 in nonmem2rx_printErrorInfo.constprop.0 /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/parseSyntaxErrors.h:130 #5 0x7b7f64661e0f in nonmem2rxSyntaxError /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/parseSyntaxErrors.h:340 #6 0x7b7f64661e0f in nonmem2rxSyntaxError /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/parseSyntaxErrors.h:325 #7 0x7b7f7898bbcd in error_recovery /tmp/RtmpN6Ja0E/R.INSTALL23c8dc4391138b/dparser/src/parse.c:1736 #8 0x7b7f7898bbcd in exhaustive_parse /tmp/RtmpN6Ja0E/R.INSTALL23c8dc4391138b/dparser/src/parse.c:1906 #9 0x7b7f7898c239 in dparse /tmp/RtmpN6Ja0E/R.INSTALL23c8dc4391138b/dparser/src/parse.c:2142 #10 0x7b7f646694a6 in trans_lst /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/lst.c:166 #11 0x7b7f646697c9 in _nonmem2rx_trans_lst /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/lst.c:184 #12 0x00000075d496 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:757 #13 0x000000761eba in do_dotcall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #14 0x000000879def in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1258 #15 0x00000074819a in do_External /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:573 #16 0x0000008ed81b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #17 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #18 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #19 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #20 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #21 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #22 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #23 0x00000088d7ce in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #24 0x000000879436 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #25 0x0000008b1d79 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #26 0x0000008ed81b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #27 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #28 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #29 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #30 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #31 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #32 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #33 0x0000008b2a72 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993 #34 0x0000008ed81b in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #35 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #36 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #37 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #38 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #39 0x000000894bd9 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #40 0x000000894bd9 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465 #41 0x00000049ffd7 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75 #42 0x000000abbb71 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #43 0x0000008f758c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #44 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #45 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #46 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #47 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #48 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #49 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #50 0x000000a218f8 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #51 0x000000a218f8 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319 #52 0x000000a3f5ba in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239 #53 0x000000a3f652 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246 #54 0x0000004120cf in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #55 0x7f7f8820a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #56 0x7f7f8820a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 5bd941be836f538fe5e10eff508f7f5dd94905a6) #57 0x000000412a94 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412a94) (BuildId: 73745f6757c13949f007329970b5fec9cc6544b8) 0x7e5f86578c04 is located 2052 bytes inside of 48000-byte region [0x7e5f86578400,0x7e5f86583f80) freed by thread T0 here: #0 0x7f7f89aee4cf in free.part.0 (/lib64/libasan.so.8+0xee4cf) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #1 0x7b7f64677adb in lineFree /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/sbuf.c:91 #2 0x7b7f646698b6 in nonmem2rx_full_parseFree /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/mem.c:42 #3 0x7b7f6466a2ca in _nonmem2rx_r_parseFree /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/mem.c:102 #4 0x00000075d4c9 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:751 #5 0x000000761eba in do_dotcall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #6 0x000000879def in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1258 #7 0x00000088d7ce in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #8 0x000000879436 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #9 0x0000006c810d in Rf_endcontext /data/localhost/ripley/R/svn/R-devel/src/main/context.c:315 #10 0x00000088f006 in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2401 #11 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #12 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #13 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #14 0x00000094475a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #15 0x0000008c585f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #16 0x0000008c585f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #17 0x0000008fac14 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #18 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #19 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #20 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #21 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #22 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #23 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #24 0x00000094475a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x0000008c585f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #26 0x0000008c585f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #27 0x0000008fac14 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #28 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #29 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #30 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #31 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #32 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #33 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #34 0x00000088d7ce in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 previously allocated by thread T0 here: #0 0x7f7f89aef24f in calloc (/lib64/libasan.so.8+0xef24f) (BuildId: 61e8165ca90f7a4f06b73f064a938c76deaae079) #1 0x000000a7e641 in R_chk_calloc /data/localhost/ripley/R/svn/R-devel/src/main/memory.c:3550 #2 0x7b7f6467710f in lineIni /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/sbuf.c:72 #3 0x7b7f64669e60 in nonmem2rx_full_parseFree /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/mem.c:67 #4 0x7b7f6466a2ca in _nonmem2rx_r_parseFree /data/localhost/ripley/R/packages/tests-gcc-SAN/nonmem2rx/src/mem.c:102 #5 0x00000075d4c9 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:751 #6 0x000000761eba in do_dotcall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #7 0x000000879def in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1258 #8 0x00000088d7ce in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #9 0x000000879436 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #10 0x0000006c810d in Rf_endcontext /data/localhost/ripley/R/svn/R-devel/src/main/context.c:315 #11 0x00000088f006 in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2401 #12 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #13 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #14 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #15 0x00000094475a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #16 0x0000008c585f in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #17 0x0000008c585f in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #18 0x0000008fac14 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #19 0x0000008d872b in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #20 0x00000087895a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #21 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #22 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #23 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #24 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #25 0x00000088d7ce in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #26 0x000000879436 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #27 0x00000088f16a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #28 0x000000892e6d in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #29 0x000000879008 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #30 0x000000879008 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #31 0x00000088d7ce in do_begin /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3001 #32 0x000000879436 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #33 0x000000899b3e in do_for /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2883 SUMMARY: AddressSanitizer: heap-use-after-free /data/localhost/ripley/R/svn/R-devel/src/main/printutils.c:993 in Rvprintf Shadow bytes around the buggy address: 0x7e5f86578980: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578a00: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578a80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578b00: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578b80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd =>0x7e5f86578c00:[fd]fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578c80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578d00: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578d80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578e00: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd 0x7e5f86578e80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==14212==ABORTING * checking package vignettes ... OK * checking re-building of vignette outputs ... [74s/77s] OK * DONE Status: 1 ERROR