* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/hmcdm.Rcheck’ * using R Under development (unstable) (2025-12-17 r89192) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘hmcdm/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘hmcdm’ version ‘2.1.2’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘hmcdm’ can be installed ... [10m/29m] WARNING Found the following significant warnings: Warning: src/Makevars: Unknown C++ standard ‘’ was ignored See ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/hmcdm.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ * checking package directory ... OK * checking whether the package can be loaded ... [16s/52s] OK * checking whether the package can be loaded with stated dependencies ... [14s/51s] OK * checking whether the package can be unloaded cleanly ... [13s/47s] OK * checking whether the namespace can be loaded with stated dependencies ... [14s/59s] OK * checking whether the namespace can be unloaded cleanly ... [17s/61s] OK * checking loading without being on the library search path ... [17s/45s] OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [17s/55s] OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [0m/90m] ERROR Error(s) in re-building vignettes: --- re-building ‘DINA_FOHM.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DINA_FOHM.Rmd’ --- re-building ‘DINA_HO_RT_joint.Rmd’ using rmarkdown --- re-building ‘DINA_HO_RT_sep.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/hmcdm.Rcheck/vign_test/hmcdm/vignettes/DINA_HO_RT_sep_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14514 bytes Input file size = 14604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13718 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13379 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13379 Output IDAT size = 13379 bytes (1135 bytes decrease) Output file size = 13457 bytes (1147 bytes = 7.85% decrease) [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘DINA_HO_RT_sep.Rmd’ --- re-building ‘HMDCM.Rmd’ using rmarkdown Quitting from HMDCM.Rmd:56-74 [unnamed-chunk-4] Execution halted --- re-building ‘NIDA_indept.Rmd’ using rmarkdown * DONE Status: 1 ERROR, 1 WARNING