--- re-building ‘gap.Rmd’ using rmarkdown Read 16 records ================================================================= ==3557093==ERROR: AddressSanitizer: memcpy-param-overlap: memory ranges [0x7c54a9de5280,0x7c54a9de5378) and [0x7c54a9de5288, 0x7c54a9de5380) overlap #0 0x7f44ae8e44a6 in memcpy (/lib64/libasan.so.8+0xe44a6) (BuildId: 7f1aa7e2e600e8c9d54ce6e3d36f3d31bfe7949a) #1 0x7b44945452f1 in agg::font_cache_pool::font(char const*, bool) agg/include/agg_font_cache_manager.h:176 #2 0x7b44945452f1 in agg::font_cache_manager::synchronize() agg/include/agg_font_cache_manager.h:387 #3 0x7b44945452f1 in agg::font_cache_manager::glyph(unsigned int) agg/include/agg_font_cache_manager.h:289 #4 0x7b449474e063 in void TextRenderer, agg::order_rgba>, agg::row_accessor > >::plot_text, agg::order_rgba>, agg::row_accessor >, agg::renderer_scanline_aa_solid, agg::order_rgb>, agg::row_accessor, 3u, 0u> > >, agg::renderer_base, agg::order_rgb>, agg::row_accessor, 3u, 0u> >, agg::rasterizer_scanline_aa >, agg::scanline_u8>(double, double, char const*, double, double, agg::renderer_scanline_aa_solid, agg::order_rgb>, agg::row_accessor, 3u, 0u> > >&, agg::renderer_base, agg::order_rgb>, agg::row_accessor, 3u, 0u> >&, agg::scanline_u8&, unsigned int, agg::rasterizer_scanline_aa >&, bool, agg::path_base >*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/text_renderer.h:320 #5 0x7b44946f91f7 in AggDevice, agg::order_rgb>, agg::row_accessor, 3u, 0u>, agg::rgba8T, agg::pixfmt_alpha_blend_rgba, agg::order_rgba>, agg::row_accessor > >::drawText(double, double, char const*, char const*, int, double, double, double, int) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/AggDevice.h:1451 #6 0x7b4494803591 in void agg_text, agg::order_rgb>, agg::row_accessor, 3u, 0u> > >(double, double, char const*, double, double, R_GE_gcontext*, _DevDesc*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/init_device.h:161 #7 0x0000007d08e3 in clipText /data/gannet/ripley/R/svn/R-devel/src/main/engine.c:1662 #8 0x0000007d08e3 in GEText /data/gannet/ripley/R/svn/R-devel/src/main/engine.c:2020 #9 0x7b449fe485a0 in Rf_GText /data/gannet/ripley/R/svn/R-devel/src/library/graphics/src/graphics.c:3093 #10 0x7b449feb8bf0 in C_text /data/gannet/ripley/R/svn/R-devel/src/library/graphics/src/plot.c:2292 #11 0x00000073b9cb in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #12 0x0000007569dc in do_Externalgr /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1511 #13 0x0000008e96a1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8067 #14 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #15 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #16 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #17 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #18 0x000000a98013 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #19 0x000000a98013 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #20 0x000000a9be10 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #21 0x000000a9e050 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:523 #22 0x000000a9e9b6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #23 0x0000008dd2a1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152 #24 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #25 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #26 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #27 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #28 0x00000085e1d3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #29 0x00000085e1d3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #30 0x000000893691 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #31 0x0000008d0092 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #32 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #33 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #34 0x000000924971 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #35 0x00000085f18c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #36 0x000000896153 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3998 #37 0x000000a96e06 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1411 #38 0x0000008dd2a1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152 #39 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #40 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #41 0x000000924971 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #42 0x00000085f18c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #43 0x000000924971 in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #44 0x0000008a81b1 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #45 0x0000008a81b1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5849 #46 0x0000008dff0c in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7862 #47 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #48 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #50 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #51 0x00000085e1d3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #52 0x00000085e1d3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #53 0x000000893691 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #54 0x0000008d0092 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #55 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #56 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #57 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #58 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #59 0x00000085e1d3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #60 0x00000085e1d3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #61 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #62 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #63 0x0000008e4b95 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #64 0x0000008e4b95 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8103 #65 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #66 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #67 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #68 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #69 0x00000085e1d3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #70 0x00000085e1d3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #71 0x000000a033c8 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #72 0x000000a033c8 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #73 0x000000a1172a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235 #74 0x000000a117c2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242 #75 0x00000041317f in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #76 0x7f44ad0115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #77 0x7f44ad0116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #78 0x000000413b64 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413b64) (BuildId: 937c7270fc4db8ea6faaf3e778fde32536b80703) 0x7c54a9de5280 is located 0 bytes inside of 256-byte region [0x7c54a9de5280,0x7c54a9de5380) allocated by thread T0 here: #0 0x7f44ae8e7b8b in operator new[](unsigned long) (/lib64/libasan.so.8+0xe7b8b) (BuildId: 7f1aa7e2e600e8c9d54ce6e3d36f3d31bfe7949a) #1 0x7b44945a8493 in agg::pod_allocator::allocate(unsigned int) agg/include/agg_basics.h:38 #2 0x7b44945a8493 in agg::font_cache_pool::font_cache_pool(unsigned int) agg/include/agg_font_cache_manager.h:150 #3 0x7b44945a8493 in agg::font_cache_manager::font_cache_manager(agg::font_engine_freetype_int32&, unsigned int) [clone .constprop.0] agg/include/agg_font_cache_manager.h:273 #4 0x7b44944e52c9 in TextRenderer, agg::order_rgba>, agg::row_accessor > >::get_manager() /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/text_renderer.h:418 #5 0x7b44944e52c9 in TextRenderer, agg::order_rgba>, agg::row_accessor > >::get_char_metric(int, double*, double*, double*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/text_renderer.h:214 #6 0x7b4494703fa8 in AggDevice, agg::order_rgb>, agg::row_accessor, 3u, 0u>, agg::rgba8T, agg::pixfmt_alpha_blend_rgba, agg::order_rgba>, agg::row_accessor > >::charMetric(int, char const*, int, double, double*, double*, double*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/AggDevice.h:656 #7 0x7b4494805b5b in void agg_metric_info, agg::order_rgb>, agg::row_accessor, 3u, 0u> > >(int, R_GE_gcontext*, double*, double*, double*, _DevDesc*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/init_device.h:12 #8 0x0000007df395 in GEMetricInfo /data/gannet/ripley/R/svn/R-devel/src/main/engine.c:2573 #9 0x0000007e0165 in GEStrHeight /data/gannet/ripley/R/svn/R-devel/src/main/engine.c:2680 #10 0x7b449fe48394 in Rf_GStrHeight /data/gannet/ripley/R/svn/R-devel/src/library/graphics/src/graphics.c:3071 #11 0x7b449fedc4e5 in C_strHeight /data/gannet/ripley/R/svn/R-devel/src/library/graphics/src/plot.c:3424 #12 0x00000073b9cb in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x0000007569dc in do_Externalgr /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1511 #14 0x0000008e96a1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8067 #15 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #16 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #18 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #19 0x000000a98013 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #20 0x000000a98013 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #21 0x000000a9be10 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #22 0x000000a9dd95 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #23 0x000000a9e9b6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #24 0x0000008dd2a1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152 #25 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #26 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #28 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #29 0x00000085e1d3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #30 0x00000085e1d3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #31 0x000000893691 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #32 0x0000008d0092 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #33 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #34 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 0x7c54a9de5288 is located 8 bytes inside of 256-byte region [0x7c54a9de5280,0x7c54a9de5380) allocated by thread T0 here: #0 0x7f44ae8e7b8b in operator new[](unsigned long) (/lib64/libasan.so.8+0xe7b8b) (BuildId: 7f1aa7e2e600e8c9d54ce6e3d36f3d31bfe7949a) #1 0x7b44945a8493 in agg::pod_allocator::allocate(unsigned int) agg/include/agg_basics.h:38 #2 0x7b44945a8493 in agg::font_cache_pool::font_cache_pool(unsigned int) agg/include/agg_font_cache_manager.h:150 #3 0x7b44945a8493 in agg::font_cache_manager::font_cache_manager(agg::font_engine_freetype_int32&, unsigned int) [clone .constprop.0] agg/include/agg_font_cache_manager.h:273 #4 0x7b44944e52c9 in TextRenderer, agg::order_rgba>, agg::row_accessor > >::get_manager() /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/text_renderer.h:418 #5 0x7b44944e52c9 in TextRenderer, agg::order_rgba>, agg::row_accessor > >::get_char_metric(int, double*, double*, double*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/text_renderer.h:214 #6 0x7b4494703fa8 in AggDevice, agg::order_rgb>, agg::row_accessor, 3u, 0u>, agg::rgba8T, agg::pixfmt_alpha_blend_rgba, agg::order_rgba>, agg::row_accessor > >::charMetric(int, char const*, int, double, double*, double*, double*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/AggDevice.h:656 #7 0x7b4494805b5b in void agg_metric_info, agg::order_rgb>, agg::row_accessor, 3u, 0u> > >(int, R_GE_gcontext*, double*, double*, double*, _DevDesc*) /tmp/RtmpAFaHcf/R.INSTALL2b4d63301b840/ragg/src/init_device.h:12 #8 0x0000007df395 in GEMetricInfo /data/gannet/ripley/R/svn/R-devel/src/main/engine.c:2573 #9 0x0000007e0165 in GEStrHeight /data/gannet/ripley/R/svn/R-devel/src/main/engine.c:2680 #10 0x7b449fe48394 in Rf_GStrHeight /data/gannet/ripley/R/svn/R-devel/src/library/graphics/src/graphics.c:3071 #11 0x7b449fedc4e5 in C_strHeight /data/gannet/ripley/R/svn/R-devel/src/library/graphics/src/plot.c:3424 #12 0x00000073b9cb in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576 #13 0x0000007569dc in do_Externalgr /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1511 #14 0x0000008e96a1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8067 #15 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #16 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #18 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #19 0x000000a98013 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #20 0x000000a98013 in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #21 0x000000a9be10 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #22 0x000000a9dd95 in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513 #23 0x000000a9e9b6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #24 0x0000008dd2a1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152 #25 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #26 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x00000087387a in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389 #28 0x00000087793a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302 #29 0x00000085e1d3 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324 #30 0x00000085e1d3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #31 0x000000893691 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3955 #32 0x0000008d0092 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132 #33 0x0000008bd2db in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515 #34 0x00000085db32 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 SUMMARY: AddressSanitizer: memcpy-param-overlap agg/include/agg_font_cache_manager.h:176 in agg::font_cache_pool::font(char const*, bool) ==3557093==ABORTING --- re-building ‘shinygap.Rmd’ using rmarkdown --- finished re-building ‘shinygap.Rmd’ SUMMARY: processing the following file failed: ‘gap.Rmd’ Error: Vignette re-building failed. Execution halted