* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/apLCMS.Rcheck’
* using R Under development (unstable) (2025-08-25 r88702)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘apLCMS/DESCRIPTION’ ... OK
* this is package ‘apLCMS’ version ‘6.8.3’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘apLCMS’ can be installed ... [165s/186s] OK
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* checking package directory ... OK
* checking whether the package can be loaded ... [17s/18s] OK
* checking whether the package can be loaded with stated dependencies ... [14s/14s] OK
* checking whether the package can be unloaded cleanly ... [16s/17s] OK
* checking whether the namespace can be loaded with stated dependencies ... [16s/16s] OK
* checking whether the namespace can be unloaded cleanly ... [18s/18s] OK
* checking loading without being on the library search path ... [17s/18s] OK
* checking compiled code ... OK
* checking examples ... [24s/26s] ERROR
Running examples in ‘apLCMS-Ex.R’ failed
The error most likely occurred in:

> ### Name: proc.cdf.2d
> ### Title: Compute a 2D Binned Kernel Density Estimate from LC/MS data in
> ###   CDF format.
> ### Aliases: proc.cdf.2d
> ### Keywords: distribution density
> 
> ### ** Examples
> 
> library(msdata)
> filepath <- system.file("microtofq", package = "msdata")
> file <- list.files(filepath, pattern="MM14.mzML",
+                      full.names=TRUE, recursive = TRUE)
> peakInfo <- proc.cdf.2d(file)
=================================================================
==1025933==ERROR: AddressSanitizer: alloc-dealloc-mismatch (operator new [] vs operator delete) on 0x7bba4758e800
    #0 0x7fba666e897b in operator delete(void*, unsigned long) (/lib64/libasan.so.8+0xe897b) (BuildId: 7f1aa7e2e600e8c9d54ce6e3d36f3d31bfe7949a)
    #1 0x7bba481a8f32 in calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/apLCMS/src/CalDen.cpp:665
    #2 0x7bba481aef29 in _apLCMS_calculateDensity /data/gannet/ripley/R/packages/tests-gcc-SAN/apLCMS/src/RcppExports.cpp:53
    #3 0x0000007435e4 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:819
    #4 0x000000748a9a in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437
    #5 0x0000008c3c12 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118
    #6 0x0000008b0e5b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501
    #7 0x0000008517a2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #8 0x0000008691ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393
    #9 0x00000086d3ca in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306
    #10 0x000000851e43 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328
    #11 0x000000851e43 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280
    #12 0x0000008820de in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567
    #13 0x000000852266 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232
    #14 0x0000009f7108 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264
    #15 0x0000009f7108 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317
    #16 0x0000009fc53a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235
    #17 0x000000a06752 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242
    #18 0x0000004132af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29
    #19 0x7fba64e115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #20 0x7fba64e116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #21 0x000000413c34 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413c34) (BuildId: 89229ea047f2d224fe28bbc44e54e26b089274e2)

0x7bba4758e800 is located 0 bytes inside of 1287440-byte region [0x7bba4758e800,0x7bba476c8d10)
allocated by thread T0 here:
    #0 0x7fba666e7b8b in operator new[](unsigned long) (/lib64/libasan.so.8+0xe7b8b) (BuildId: 7f1aa7e2e600e8c9d54ce6e3d36f3d31bfe7949a)
    #1 0x7bba481a6b2d in calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/apLCMS/src/CalDen.cpp:569
    #2 0x7bba481aef29 in _apLCMS_calculateDensity /data/gannet/ripley/R/packages/tests-gcc-SAN/apLCMS/src/RcppExports.cpp:53
    #3 0x0000007435e4 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:819
    #4 0x000000748a9a in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437
    #5 0x0000008c3c12 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118
    #6 0x0000008b0e5b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501
    #7 0x0000008517a2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167
    #8 0x0000008691ba in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393
    #9 0x00000086d3ca in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306
    #10 0x000000851e43 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328
    #11 0x000000851e43 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280
    #12 0x0000008820de in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567
    #13 0x000000852266 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232
    #14 0x0000009f7108 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264
    #15 0x0000009f7108 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317
    #16 0x0000009fc53a in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235
    #17 0x000000a06752 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242
    #18 0x0000004132af in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29
    #19 0x7fba64e115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #20 0x7fba64e116a7 in __libc_start_main@@GLIBC_2.34 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #21 0x000000413c34 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x413c34) (BuildId: 89229ea047f2d224fe28bbc44e54e26b089274e2)

SUMMARY: AddressSanitizer: alloc-dealloc-mismatch /data/gannet/ripley/R/packages/tests-gcc-SAN/apLCMS/src/CalDen.cpp:665 in calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int)
==1025933==HINT: if you don't care about these errors you may set ASAN_OPTIONS=alloc_dealloc_mismatch=0
==1025933==ABORTING
* DONE
Status: 1 ERROR