* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/ShortRead.Rcheck’
* using R Under development (unstable) (2026-04-15 r89888)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-04-16 02:18:04 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘ShortRead/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ShortRead’ version ‘1.69.3-2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘ShortRead’ can be installed ... [8m/12m] WARNING
Found the following significant warnings:
  io.c:227:38: warning: format ‘%f’ expects argument of type ‘double’, but argument 2 has type ‘const char *’ [-Wformat=]
  io.c:658:49: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘int’ [-Wformat=]
  io.c:676:48: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘int’ [-Wformat=]
See ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/ShortRead.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
* used C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
* checking package directory ... OK
* checking whether the package can be loaded ... [84s/87s] OK
* checking whether the package can be loaded with stated dependencies ... [83s/84s] OK
* checking whether the package can be unloaded cleanly ... [88s/91s] OK
* checking whether the namespace can be loaded with stated dependencies ... [80s/83s] OK
* checking whether the namespace can be unloaded cleanly ... [86s/87s] OK
* checking loading without being on the library search path ... [86s/87s] OK
* checking compiled code ... WARNING
File ‘ShortRead/libs/ShortRead.so’:
  Found non-API call to R: ‘Rf_findVar’
This entry point may be removed soon.

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [237s/242s] OK
* checking tests ... [147s/147s] OK
  Running ‘ShortRead_unit_tests.R’ [145s/145s]
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [154s/156s] OK
* DONE
Status: 2 WARNINGs