* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/PVplr.Rcheck’ * using R Under development (unstable) (2025-01-08 r87545) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘PVplr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PVplr’ version ‘0.1.2’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘PVplr’ can be installed ... [51s/64s] OK * checking package directory ... OK * checking whether the package can be loaded ... [10s/12s] OK * checking whether the package can be loaded with stated dependencies ... [7s/11s] OK * checking whether the package can be unloaded cleanly ... [7s/11s] OK * checking whether the namespace can be loaded with stated dependencies ... [7s/11s] OK * checking whether the namespace can be unloaded cleanly ... [10s/14s] OK * checking loading without being on the library search path ... [9s/13s] OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [318s/450s] OK * checking tests ... [334s/431s] OK Running ‘prelim_test.R’ [330s/426s] Running ‘testthat.R’ * checking package vignettes ... OK * checking re-building of vignette outputs ... [8m/10m] ERROR Error(s) in re-building vignettes: --- re-building ‘feature_correction.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/PVplr.Rcheck/vign_test/PVplr/vignettes/feature_correction_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20511 bytes Input file size = 20613 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14667 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14667 Output IDAT size = 14667 bytes (5844 bytes decrease) Output file size = 14745 bytes (5868 bytes = 28.47% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/PVplr.Rcheck/vign_test/PVplr/vignettes/feature_correction_files/figure-html/unnamed-chunk-5-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15936 bytes Input file size = 16026 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11235 Output IDAT size = 11235 bytes (4701 bytes decrease) Output file size = 11313 bytes (4713 bytes = 29.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/PVplr.Rcheck/vign_test/PVplr/vignettes/feature_correction_files/figure-html/unnamed-chunk-5-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19699 bytes Input file size = 19801 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14832 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14832 Output IDAT size = 14832 bytes (4867 bytes decrease) Output file size = 14910 bytes (4891 bytes = 24.70% decrease) --- finished re-building ‘feature_correction.Rmd’ --- re-building ‘model_comparison.Rmd’ using rmarkdown ================================================================= ==2057613==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x51100025b838 at pc 0x7f3c466e88ad bp 0x7ffd00e6a810 sp 0x7ffd00e6a808 READ of size 8 at 0x51100025b838 thread T0 #0 0x7f3c466e88ac in nls_lm /tmp/Rtmpq2dZ7Q/R.INSTALL3c45d721f76edb/minpack.lm/src/nls_lm.c:208 #1 0x71f848 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:775 #2 0x736fd2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #3 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #4 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #5 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #6 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #7 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #8 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #9 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #10 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #11 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #12 0x8645f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #13 0x8645f7 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2460 #14 0x7f3c3c8b9d12 in call_loop /tmp/RtmpLAW6At/R.INSTALL2af3c23a47ecf8/purrr/src/map.c:46 #15 0x7f3c3c8b9ecb in map_impl /tmp/RtmpLAW6At/R.INSTALL2af3c23a47ecf8/purrr/src/map.c:90 #16 0x71a054 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:770 #17 0x736fd2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #18 0x83be86 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1260 #19 0x7f3c3c8b7c3d in with_cleanup_context_wrap /tmp/RtmpLAW6At/R.INSTALL2af3c23a47ecf8/purrr/src/cleancall.c:117 #20 0x68ad77 in R_ExecWithCleanup /data/gannet/ripley/R/svn/R-devel/src/main/context.c:912 #21 0x7f3c3c8b7f51 in r_with_cleanup_context /tmp/RtmpLAW6At/R.INSTALL2af3c23a47ecf8/purrr/src/cleancall.c:133 #22 0x7f3c3c8b7fd1 in cleancall_call /tmp/RtmpLAW6At/R.INSTALL2af3c23a47ecf8/purrr/src/cleancall.c:60 #23 0x71a18c in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:757 #24 0x8b8594 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8672 #25 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #26 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #27 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #28 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #29 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #30 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #31 0x7f3c4490d621 in r_eval rlang/eval.h:7 #32 0x7f3c4490d621 in rlang_eval_tidy internal/eval-tidy.c:538 #33 0x7f3c3c8f7449 in dplyr_mask_eval_all_mutate(SEXPREC*, SEXPREC*) /tmp/RtmpzCQ53l/R.INSTALL2d2395ca094bd/dplyr/src/mutate.cpp:36 #34 0x71a18c in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:757 #35 0x736fd2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #36 0x83be86 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1260 #37 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #38 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #39 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #40 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #41 0x84abc3 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3000 #42 0x83b4c6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #43 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #44 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #45 0x8b69a5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #46 0x8b69a5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8093 #47 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #48 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #49 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #50 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #51 0xa4f09b in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #52 0xa4f09b in applyMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:120 #53 0xa53257 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473 #54 0xf48faa in Rf_usemethod.isra.0 /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:509 #55 0xa54ec6 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579 #56 0x8afb5d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8142 #57 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #58 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #59 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #60 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #61 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #62 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #63 0x7f3c3cc94031 in eval_pipe_lazy /tmp/Rtmp3fHJOR/R.INSTALL21c250123d8cd5/magrittr/src/pipe.c:186 #64 0x7f3c3cc94031 in magrittr_pipe /tmp/Rtmp3fHJOR/R.INSTALL21c250123d8cd5/magrittr/src/pipe.c:105 #65 0x709f96 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573 #66 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #67 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #68 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #69 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #70 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #71 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #72 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #73 0x85eb86 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3571 #74 0x83b4c6 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232 #75 0x866d99 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3945 #76 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #77 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #78 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #79 0x8f637b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #80 0x83c06c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #81 0x855116 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3988 #82 0xa4df1a in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1410 #83 0x8afb5d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8142 #84 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #85 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #86 0x8f637b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #87 0x83c06c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1187 #88 0x8f637b in forcePromise.part.0.lto_priv.0 /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976 #89 0x87e7ef in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:956 #90 0x87e7ef in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5839 #91 0x8b1fab in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7852 #92 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #93 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #94 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #95 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #96 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #97 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #98 0x866d99 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3945 #99 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #100 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #101 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #102 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #103 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #104 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #105 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #106 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #107 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #108 0x8b69a5 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #109 0x8b69a5 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8093 #110 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #111 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #112 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #113 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #114 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #115 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #116 0x9c4e19 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:265 #117 0x9c4e19 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317 #118 0x9c631b in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1219 #119 0x9d0892 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1226 #120 0x4290cf in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #121 0x7f3c5202950f in __libc_start_call_main (/lib64/libc.so.6+0x2950f) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #122 0x7f3c520295c8 in __libc_start_main_alias_2 (/lib64/libc.so.6+0x295c8) (BuildId: 8257ee907646e9b057197533d1e4ac8ede7a9c5c) #123 0x429ab4 in _start (/data/gannet/ripley/R/gcc-SAN3/bin/exec/R+0x429ab4) (BuildId: b25c18b29da9020de134f39d59f7dee05849d9e9) 0x51100025b838 is located 0 bytes after 248-byte region [0x51100025b740,0x51100025b838) allocated by thread T0 here: #0 0x7f3c538f7997 in malloc ../../../../latest/libsanitizer/asan/asan_malloc_linux.cpp:69 #1 0xa2d827 in Rf_allocVector3 /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2890 #2 0xa39b91 in Rf_allocVector /data/gannet/ripley/R/svn/R-devel/src/include/Rinlinedfuns.h:607 #3 0xa39b91 in R_alloc /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2332 #4 0x7f3c466e5bae in nls_lm /tmp/Rtmpq2dZ7Q/R.INSTALL3c45d721f76edb/minpack.lm/src/nls_lm.c:85 #5 0x71f848 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:775 #6 0x736fd2 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #7 0x8a2ae3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8122 #8 0x873caf in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7505 #9 0x83aa12 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167 #10 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #11 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #12 0x83b096 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #13 0x83b096 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280 #14 0x8459e2 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393 #15 0x83938a in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306 #16 0x8645f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328 #17 0x8645f7 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2460 #18 0x7f3c3c8b9d12 in call_loop /tmp/RtmpLAW6At/R.INSTALL2af3c23a47ecf8/purrr/src/map.c:46 SUMMARY: AddressSanitizer: heap-buffer-overflow /tmp/Rtmpq2dZ7Q/R.INSTALL3c45d721f76edb/minpack.lm/src/nls_lm.c:208 in nls_lm Shadow bytes around the buggy address: 0x51100025b580: fd fd fd fd fd fd fa fa fa fa fa fa fa fa fa fa 0x51100025b600: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x51100025b680: 00 00 00 00 00 00 00 00 00 00 00 00 fa fa fa fa 0x51100025b700: fa fa fa fa fa fa fa fa 00 00 00 00 00 00 00 00 0x51100025b780: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 =>0x51100025b800: 00 00 00 00 00 00 00[fa]fa fa fa fa fa fa fa fa 0x51100025b880: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x51100025b900: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 fa 0x51100025b980: fa fa fa fa fa fa fa fa 00 00 00 00 00 00 00 00 0x51100025ba00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x51100025ba80: 00 00 00 00 00 00 00 00 fa fa fa fa fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==2057613==ABORTING --- re-building ‘nonlinear_plr.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/PVplr.Rcheck/vign_test/PVplr/vignettes/nonlinear_plr_files/figure-html/unnamed-chunk-2-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24961 bytes Input file size = 25075 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20210 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20210 Output IDAT size = 20210 bytes (4751 bytes decrease) Output file size = 20288 bytes (4787 bytes = 19.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-gcc-SAN/PVplr.Rcheck/vign_test/PVplr/vignettes/nonlinear_plr_files/figure-html/unnamed-chunk-4-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18858 bytes Input file size = 18960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13765 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13765 Output IDAT size = 13765 bytes (5093 bytes decrease) Output file size = 13843 bytes (5117 bytes = 26.99% decrease) --- finished re-building ‘nonlinear_plr.Rmd’ --- re-building ‘pipeline_walkthrough.Rmd’ using rmarkdown --- finished re-building ‘pipeline_walkthrough.Rmd’ SUMMARY: processing the following file failed: ‘model_comparison.Rmd’ Error: Vignette re-building failed. Execution halted * DONE Status: 1 ERROR