* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet.Rcheck’ * using R Under development (unstable) (2022-03-14 r81892) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘FlywayNet/DESCRIPTION’ ... OK * this is package ‘FlywayNet’ version ‘0.1.0’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘FlywayNet’ can be installed ... [262s/154s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [9s/11s] ERROR Running examples in ‘FlywayNet-Ex.R’ failed The error most likely occurred in: > ### Name: estimate_migration_ABC > ### Title: Estimates migration parameters using an ABC method. > ### Aliases: estimate_migration_ABC > > ### ** Examples > > migr <- generate_toy_migration() > # Argument nb_simul just provide to reduce running time > estimated_migr <- estimate_migration_ABC( migr, nb_simul = 30 ) [1] " ------ Lenormand et al. (2012)'s algorithm ------" ================================================================= ==739771==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x612000324c20 at pc 0x7f457362856e bp 0x7ffc4f36cf50 sp 0x7ffc4f36cf48 READ of size 8 at 0x612000324c20 thread T0 #0 0x7f457362856d in simulate_trajectories(Rcpp::Matrix<14, Rcpp::PreserveStorage>&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/generate_trajectories_C.cpp:119 #1 0x7f457362aa1b in generate_trajectories_C(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Nullable >, Rcpp::Nullable) /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/generate_trajectories_C.cpp:36 #2 0x7f457356b8a5 in _FlywayNet_generate_trajectories_C /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/RcppExports.cpp:65 #3 0x580b43 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:607 #4 0x589d5c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1284 #5 0x62d766 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7136 #6 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #7 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #8 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #9 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #10 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #11 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #12 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #13 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #14 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #15 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #16 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #17 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #18 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #19 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #20 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #21 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #22 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #23 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #24 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #25 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #26 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #27 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #28 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #29 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #30 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #31 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #32 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #33 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #34 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #35 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #36 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #37 0x67569f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:871 #38 0x681779 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2991 #39 0x675ac0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:823 #40 0x6f75cd in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #41 0x6f7c60 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:316 #42 0x6f7da4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1137 #43 0x6f7df2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1144 #44 0x41b418 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #45 0x7f45841cfb74 in __libc_start_main (/lib64/libc.so.6+0x27b74) #46 0x41dc1d in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41dc1d) 0x612000324c20 is located 32 bytes to the left of 288-byte region [0x612000324c40,0x612000324d60) allocated by thread T0 here: #0 0x7f45858bb91f in __interceptor_malloc (/lib64/libasan.so.6+0xae91f) #1 0x71bb4f in Rf_allocVector3 /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2834 SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/generate_trajectories_C.cpp:119 in simulate_trajectories(Rcpp::Matrix<14, Rcpp::PreserveStorage>&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int) Shadow bytes around the buggy address: 0x0c248005c930: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c248005c940: 00 00 00 00 00 00 00 00 00 fa fa fa fa fa fa fa 0x0c248005c950: fa fa fa fa fa fa fa fa 00 00 00 00 00 00 00 00 0x0c248005c960: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c248005c970: 00 00 00 00 00 00 00 00 00 00 00 00 00 fa fa fa =>0x0c248005c980: fa fa fa fa[fa]fa fa fa 00 00 00 00 00 00 00 00 0x0c248005c990: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c248005c9a0: 00 00 00 00 00 00 00 00 00 00 00 00 fa fa fa fa 0x0c248005c9b0: fa fa fa fa fa fa fa fa 00 00 00 00 00 00 00 00 0x0c248005c9c0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c248005c9d0: 00 00 00 00 00 00 00 00 00 00 00 00 fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==739771==ABORTING * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [12s/13s] ERROR Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown ================================================================= ==739992==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x612000440720 at pc 0x7fc21841456e bp 0x7ffde5326400 sp 0x7ffde53263f8 READ of size 8 at 0x612000440720 thread T0 #0 0x7fc21841456d in simulate_trajectories(Rcpp::Matrix<14, Rcpp::PreserveStorage>&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/generate_trajectories_C.cpp:119 #1 0x7fc218416a1b in generate_trajectories_C(Rcpp::Vector<19, Rcpp::PreserveStorage>, Rcpp::Nullable >, Rcpp::Nullable) /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/generate_trajectories_C.cpp:36 #2 0x7fc2183578a5 in _FlywayNet_generate_trajectories_C /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/RcppExports.cpp:65 #3 0x580b43 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:607 #4 0x589d5c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1284 #5 0x62d766 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7136 #6 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #7 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #8 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #9 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #10 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #11 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #12 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #13 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #14 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #15 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #16 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #17 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #18 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #19 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #20 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #21 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #22 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #23 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #24 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #25 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #26 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #27 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #28 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #29 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #30 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #31 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #32 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #33 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #34 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #35 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #36 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #37 0x67569f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:871 #38 0x681779 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2991 #39 0x675ac0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:823 #40 0x684618 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3366 #41 0x62d766 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7136 #42 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #43 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #44 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #45 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #46 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #47 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #48 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #49 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #50 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #51 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #52 0x6753f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:771 #53 0x685eac in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3418 #54 0x7224b1 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1399 #55 0x6285ac in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7156 #56 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #57 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #58 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #59 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #60 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #61 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #62 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #63 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #64 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #65 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #66 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #67 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #68 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #69 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #70 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #71 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #72 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #73 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #74 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #75 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #76 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #77 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #78 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #79 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #80 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #81 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #82 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #83 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #84 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #85 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #86 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #87 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #88 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #89 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #90 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #91 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #92 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #93 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #94 0x67569f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:871 #95 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #96 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #97 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #98 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #99 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #100 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #101 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #102 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #103 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #104 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #105 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #106 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #107 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #108 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #109 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #110 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #111 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #112 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #113 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #114 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #115 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #116 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #117 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #118 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #119 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #120 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #121 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #122 0x727e8e in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436 #123 0x7289b7 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476 #124 0x7294e2 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565 #125 0x6285ac in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7156 #126 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #127 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #128 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #129 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #130 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #131 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #132 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #133 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #134 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #135 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #136 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #137 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #138 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #139 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #140 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #141 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #142 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #143 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #144 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #145 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #146 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #147 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #148 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #149 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #150 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #151 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #152 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #153 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #154 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #155 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #156 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #157 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #158 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #159 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #160 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #161 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #162 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #163 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #164 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #165 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #166 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #167 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #168 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #169 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #170 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #171 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #172 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #173 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #174 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #175 0x676e42 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568 #176 0x6775d7 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5157 #177 0x6775d7 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5198 #178 0x63bf2a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6888 #179 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #180 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #181 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #182 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #183 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #184 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #185 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #186 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #187 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #188 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #189 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #190 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #191 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #192 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #193 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #194 0x64c745 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7104 #195 0x675027 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748 #196 0x67a100 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1918 #197 0x67c4f7 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844 #198 0x67569f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:871 #199 0x6f75cd in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264 #200 0x6f7c60 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:316 #201 0x6f7da4 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1137 #202 0x6f7df2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1144 #203 0x41b418 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29 #204 0x7fc22c370b74 in __libc_start_main (/lib64/libc.so.6+0x27b74) #205 0x41dc1d in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41dc1d) 0x612000440720 is located 32 bytes to the left of 288-byte region [0x612000440740,0x612000440860) allocated by thread T0 here: #0 0x7fc22da5c91f in __interceptor_malloc (/lib64/libasan.so.6+0xae91f) #1 0x71bb4f in Rf_allocVector3 /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2834 SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/packages/tests-gcc-SAN/FlywayNet/src/generate_trajectories_C.cpp:119 in simulate_trajectories(Rcpp::Matrix<14, Rcpp::PreserveStorage>&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, int) Shadow bytes around the buggy address: 0x0c2480080090: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c24800800a0: 00 00 00 00 00 00 00 00 00 00 fa fa fa fa fa fa 0x0c24800800b0: fa fa fa fa fa fa fa fa 00 00 00 00 00 00 00 00 0x0c24800800c0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c24800800d0: 00 00 00 00 00 00 00 00 00 00 00 00 00 fa fa fa =>0x0c24800800e0: fa fa fa fa[fa]fa fa fa 00 00 00 00 00 00 00 00 0x0c24800800f0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c2480080100: 00 00 00 00 00 00 00 00 00 00 00 00 fa fa fa fa 0x0c2480080110: fa fa fa fa fa fa fa fa 00 00 00 00 00 00 00 00 0x0c2480080120: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c2480080130: 00 00 00 00 00 00 00 00 00 00 00 00 fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==739992==ABORTING * DONE Status: 2 ERRORs