--- re-building ‘categorical.Rmd’ using rmarkdown --- finished re-building ‘categorical.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘prediction.Rmd’ using rmarkdown --- finished re-building ‘prediction.Rmd’ --- re-building ‘spherical.Rmd’ using rmarkdown ================================================================= ==1536315==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x7c0b81f0b878 at pc 0x7beb75af951a bp 0x7ffeb97267b0 sp 0x7ffeb97267a8 READ of size 4 at 0x7c0b81f0b878 thread T0 #0 0x7beb75af9519 in propose_internal /data/localhost/ripley/R/packages/tests-gcc-SAN/AddiVortes/src/addi_vortes_code.cpp:635 #1 0x7beb75b0b206 in addi_vortes_mcmc_cpp /data/localhost/ripley/R/packages/tests-gcc-SAN/AddiVortes/src/addi_vortes_code.cpp:882 #2 0x00000075a325 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:868 #3 0x000000760b6a in do_dotcall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #4 0x0000008eb0fb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #5 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #6 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #7 0x00000088de4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #8 0x000000891add in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #9 0x000000877ce8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #10 0x000000877ce8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #11 0x0000008a601e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #12 0x000000878116 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #13 0x0000008b03e9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #14 0x0000008eb0fb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #15 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #16 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #17 0x000000941f4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #18 0x000000878cac in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #19 0x0000008b2f23 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #20 0x000000ab8a51 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #21 0x0000008f4e6c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #22 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #23 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #24 0x000000941f4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #25 0x000000878cac in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #26 0x000000941f4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #27 0x0000008c48af in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #28 0x0000008c48af in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #29 0x0000008f85d4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #30 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #31 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x00000088de4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #33 0x000000891add in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #34 0x000000877ce8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #35 0x000000877ce8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #36 0x0000008b03e9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #37 0x0000008eb0fb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #38 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #39 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #40 0x00000088de4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #41 0x000000891add in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #42 0x000000877ce8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #43 0x000000877ce8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #44 0x00000088de4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #45 0x000000891add in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #46 0x0000008932bb in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #47 0x0000008fd147 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8121 #48 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #49 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #50 0x00000088de4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #51 0x000000891add in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #52 0x000000877ce8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #53 0x000000877ce8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #54 0x000000a1e808 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264 #55 0x000000a1e808 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:317 #56 0x000000a3c49a in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1237 #57 0x000000a3c532 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1244 #58 0x000000411faf in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29 #59 0x7feb8540a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 17f2e1fd905f485786f6fd6e3bede4ad737137e7) #60 0x7feb8540a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 17f2e1fd905f485786f6fd6e3bede4ad737137e7) #61 0x000000412974 in _start (/data/localhost/ripley/R/gcc-SAN3/bin/exec/R+0x412974) (BuildId: 9a0292c0829a34bb33a0ca68af22051b50ef2371) 0x7c0b81f0b878 is located 4 bytes after 4-byte region [0x7c0b81f0b870,0x7c0b81f0b874) allocated by thread T0 here: #0 0x7feb86cf04ff in operator new(unsigned long) (/lib64/libasan.so.8+0xf04ff) (BuildId: 5395ec74f54d9ec7bf97c06583dd39a96c230822) #1 0x7beb75b1aca5 in std::__new_allocator::allocate(unsigned long, void const*) /usr/include/c++/16/bits/new_allocator.h:162 #2 0x7beb75b1aca5 in std::allocator::allocate(unsigned long) /usr/include/c++/16/bits/allocator.h:206 #3 0x7beb75b1aca5 in std::allocator_traits >::allocate(std::allocator&, unsigned long) /usr/include/c++/16/bits/alloc_traits.h:638 #4 0x7beb75b1aca5 in std::_Vector_base >::_M_allocate(unsigned long) /usr/include/c++/16/bits/stl_vector.h:389 #5 0x7beb75b1aca5 in std::_Vector_base >::_M_allocate(unsigned long) /usr/include/c++/16/bits/stl_vector.h:386 #6 0x7beb75b1aca5 in int* std::vector >::_M_allocate_and_copy(unsigned long, int*, int*) /usr/include/c++/16/bits/stl_vector.h:1900 #7 0x7beb75b1aca5 in void std::vector >::_M_assign_aux(int*, int*, std::forward_iterator_tag) [clone .isra.0] /usr/include/c++/16/bits/vector.tcc:335 #8 0x7beb75b093f7 in void std::vector >::assign(int*, int*) /usr/include/c++/16/bits/stl_vector.h:886 #9 0x7beb75b093f7 in addi_vortes_mcmc_cpp /data/localhost/ripley/R/packages/tests-gcc-SAN/AddiVortes/src/addi_vortes_code.cpp:790 #10 0x00000075a325 in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:868 #11 0x000000760b6a in do_dotcall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c:1437 #12 0x0000008eb0fb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #13 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #14 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #15 0x00000088de4a in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398 #16 0x000000891add in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314 #17 0x000000877ce8 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333 #18 0x000000877ce8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278 #19 0x0000008a601e in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585 #20 0x000000878116 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230 #21 0x0000008b03e9 in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3975 #22 0x0000008eb0fb in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150 #23 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #24 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #25 0x000000941f4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #26 0x000000878cac in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #27 0x0000008b2f23 in do_withVisible /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:4018 #28 0x000000ab8a51 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425 #29 0x0000008f4e6c in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170 #30 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 #31 0x00000087763a in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167 #32 0x000000941f4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #33 0x000000878cac in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1185 #34 0x000000941f4a in forcePromise.part.0.lto_priv.0 /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976 #35 0x0000008c48af in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:956 #36 0x0000008c48af in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867 #37 0x0000008f85d4 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880 #38 0x0000008d5ffb in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533 SUMMARY: AddressSanitizer: heap-buffer-overflow /data/localhost/ripley/R/packages/tests-gcc-SAN/AddiVortes/src/addi_vortes_code.cpp:635 in propose_internal Shadow bytes around the buggy address: 0x7c0b81f0b580: fa fa fd fa fa fa 00 fa fa fa 04 fa fa fa fd fa 0x7c0b81f0b600: fa fa fd fa fa fa fd fa fa fa fd fa fa fa fd fa 0x7c0b81f0b680: fa fa fd fa fa fa fd fa fa fa fd fa fa fa 04 fa 0x7c0b81f0b700: fa fa fd fa fa fa fd fa fa fa fd fa fa fa fd fa 0x7c0b81f0b780: fa fa fd fa fa fa fd fa fa fa fd fa fa fa fd fa =>0x7c0b81f0b800: fa fa fd fa fa fa fd fa fa fa 00 fa fa fa 04[fa] 0x7c0b81f0b880: fa fa 00 fa fa fa 00 fa fa fa 04 fa fa fa 00 fa 0x7c0b81f0b900: fa fa 00 fa fa fa 04 fa fa fa 00 fa fa fa 00 fa 0x7c0b81f0b980: fa fa 04 fa fa fa 00 fa fa fa 00 fa fa fa 04 fa 0x7c0b81f0ba00: fa fa 00 fa fa fa 00 fa fa fa 04 fa fa fa 00 fa 0x7c0b81f0ba80: fa fa 00 fa fa fa 04 fa fa fa 00 fa fa fa 00 fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==1536315==ABORTING SUMMARY: processing the following file failed: ‘spherical.Rmd’ Error: Vignette re-building failed. Execution halted