* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-SAN/polynomial.Rcheck’ * using R Under development (unstable) (2021-02-22 r80031) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘polynomial/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘polynomial’ version ‘0.1.0’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘polynomial’ can be installed ... [17s/33s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking examples ... ERROR Running examples in ‘polynomial-Ex.R’ failed The error most likely occurred in: > ### Name: CommonPolynomials > ### Title: Common Polynomials > ### Aliases: CommonPolynomials Abel Bessel rBessel Chebyshev Chebyshev1 > ### Chebyshev2 ChebyshevT ChebyshevU Cyclotomic Hermite > > ### ** Examples > ## Don't show: > opar <- graphics::par(mar = c(5.1, 4.5, 2.1, 0.4)) > ## End(Don't show) > colours <- grDevices::palette.colors()[c("vermillion", "bluishgreen", + "blue", "skyblue", "reddishpurple", "orange")] > > > ## Abel polynomials > n <- 0:4 > plot( + xlim = c(-3, 6), ylim = c(-20, 30), + panel.first = graphics::grid(col = "gray69"), + x = NA_real_, y = NA_real_, + xlab = "x", ylab = as.call(list(call("[", as.symbol("p"), + as.symbol("n")), as.symbol("x"))), + main = "Abel Polynomials" + ) > for (i in seq_along(n)) { + graphics::lines(as.polynomial(Abel(n[[i]])), + col = colours[[i]], n = 1001, lwd = 2, + xlim = graphics::par("usr")[1:2]) + } > graphics::box() > graphics::legend( + x = "bottomright", + legend = as.expression(lapply(X = n, FUN = function(n1) { + call("==", as.symbol("n"), n1) + })), + col = colours[seq_along(n)], + lwd = 2, + bty = "n" + ) > graphics::title(sub = ~"All with" ~ list(a == 1), adj = 1) > > > ## Bessel polynomials > n <- 0:5 > plot( + xlim = c(-3, 6), ylim = c(-10, 20), + panel.first = graphics::grid(col = "gray69"), + x = NA_real_, y = NA_real_, + xlab = "x", ylab = as.call(list(call("[", as.symbol("y"), + as.symbol("n")), as.symbol("x"))), + main = "Bessel Polynomials" + ) > for (i in seq_along(n)) { + graphics::lines(as.polynomial(Bessel(n[[i]])), + col = colours[[i]], n = 1001, lwd = 2, + xlim = graphics::par("usr")[1:2]) + } > graphics::box() > graphics::legend( + x = "bottomright", + legend = as.expression(lapply(X = n, FUN = function(n1) { + call("==", as.symbol("n"), n1) + })), + col = colours[seq_along(n)], + lwd = 2, + bty = "n" + ) > > > ## Reverse Bessel polynomials > n <- 0:5 > plot( + xlim = c(-10, 10), ylim = c(-10, 20), + panel.first = graphics::grid(col = "gray69"), + x = NA_real_, y = NA_real_, + xlab = "x", ylab = as.call(list(call("[", as.symbol("theta"), + as.symbol("n")), as.symbol("x"))), + main = "Reverse Bessel Polynomials" + ) > for (i in seq_along(n)) { + graphics::lines(as.polynomial(rBessel(n[[i]])), + col = colours[[i]], n = 1001, lwd = 2, + xlim = graphics::par("usr")[1:2]) + } > graphics::box() > graphics::legend( + x = "bottomright", + legend = as.expression(lapply(X = n, FUN = function(n1) { + call("==", as.symbol("n"), n1) + })), + col = colours[seq_along(n)], + lwd = 2, + bty = "n" + ) > > > ## Chebyshev polynomials of the first kind > n <- 0:4 > plot( + xlim = c(-1, 1), ylim = c(-1, 1), + panel.first = graphics::grid(col = "gray69"), + x = NA_real_, y = NA_real_, + xlab = "x", ylab = as.call(list(call("[", as.symbol("T"), + as.symbol("n")), as.symbol("x"))), + main = "Chebyshev polynomials of the first kind" + ) > for (i in seq_along(n)) { + graphics::lines(as.polynomial(Chebyshev1(n[[i]])), + col = colours[[i]], n = 1001, lwd = 2, + xlim = graphics::par("usr")[1:2] + ) + } > graphics::box() > graphics::legend( + x = "bottomright", + legend = as.expression(lapply(X = n, FUN = function(n1) { + call("==", as.symbol("n"), n1) + })), + col = colours[seq_along(n)], + lwd = 2, + bty = "n" + ) > > > ## Chebyshev polynomials of the second kind > n <- 0:4 > plot( + xlim = c(-1, 1), ylim = c(-4, 5), + panel.first = graphics::grid(col = "gray69"), + x = NA_real_, y = NA_real_, + xlab = "x", ylab = as.call(list(call("[", as.symbol("U"), + as.symbol("n")), as.symbol("x"))), + main = "Chebyshev polynomials of the second kind" + ) > for (i in seq_along(n)) { + graphics::lines(as.polynomial(Chebyshev2(n[[i]])), + col = colours[[i]], n = 1001, lwd = 2, + xlim = graphics::par("usr")[1:2] + ) + } > graphics::box() > graphics::legend( + x = "bottomright", + legend = as.expression(lapply(X = n, FUN = function(n1) { + call("==", as.symbol("n"), n1) + })), + col = colours[seq_along(n)], + lwd = 2, + bty = "n" + ) > > > ## Cyclotomic polynomials > n <- 1:5 > plot( + xlim = c(-3, 3), ylim = c(-10, 10), + panel.first = graphics::grid(col = "gray69"), + x = NA_real_, y = NA_real_, + xlab = "x", ylab = as.call(list(call("[", as.symbol("Phi"), + as.symbol("n")), as.symbol("x"))), + main = "Cyclotomic Polynomials" + ) > for (i in seq_along(n)) { + graphics::lines(as.polynomial(Cyclotomic(n[[i]])), + col = colours[[i]], n = 1001, lwd = 2, + xlim = graphics::par("usr")[1:2] + ) + } > graphics::box() > graphics::legend( + x = "bottomright", + legend = as.expression(lapply(X = n, FUN = function(n1) { + call("==", as.symbol("n"), n1) + })), + col = colours[seq_along(n)], + lwd = 2, + bty = "n" + ) > > > ## Hermite polynomials > n <- 0:5 > plot( + xlim = c(-3, 6), ylim = c(-10, 20), + panel.first = graphics::grid(col = "gray69"), + x = NA_real_, y = NA_real_, + xlab = "x", ylab = as.call(list(call("[", as.symbol("H"), + as.symbol("n")), as.symbol("x"))), + main = "Hermite Polynomials" + ) > for (i in seq_along(n)) { + graphics::lines(as.polynomial(Hermite(n[[i]])), + col = colours[[i]], n = 1001, lwd = 2, + xlim = graphics::par("usr")[1:2] + ) + } main.c:31:16: runtime error: variable length array bound evaluates to non-positive value 0 #0 0x7f065c1d2c75 in hermite /data/gannet/ripley/R/packages/tests-clang-SAN/polynomial/src/main.c:31:5 #1 0x6e3cbd in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:598:17 #2 0x847463 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7671:21 #3 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #4 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #5 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #6 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #7 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #8 0x88e6a6 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:555:8 #9 0x8c0260 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5136:15 #10 0x8c0260 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5177:14 #11 0x862392 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6867:20 #12 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #13 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #14 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #15 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #16 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #17 0x88e6a6 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:555:8 #18 0x82bf8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763:6 #19 0x9b99e7 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:563:2 #20 0x849d07 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7135:15 #21 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #22 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #23 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #24 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #25 0x89f5a3 in R_compileAndExecute /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1518:2 #26 0x89c41b in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:9 #27 0x82b95c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:802:12 #28 0x9638e7 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:2 #29 0x966cc0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314:11 #30 0x966ae9 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113:5 #31 0x966e42 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1120:5 #32 0x4de22a in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #33 0x7f066cd00081 in __libc_start_main (/lib64/libc.so.6+0x27081) #34 0x4312dd in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x4312dd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior main.c:31:16 in main.c:53:9: runtime error: index 1 out of bounds for type 'double [degree]' #0 0x7f065c1d2ac9 in hermite /data/gannet/ripley/R/packages/tests-clang-SAN/polynomial/src/main.c:53:20 #1 0x6e3cbd in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:598:17 #2 0x847463 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7671:21 #3 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #4 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #5 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #6 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #7 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #8 0x88e6a6 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:555:8 #9 0x8c0260 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5136:15 #10 0x8c0260 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5177:14 #11 0x862392 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6867:20 #12 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #13 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #14 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #15 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #16 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #17 0x88e6a6 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:555:8 #18 0x82bf8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763:6 #19 0x9b99e7 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:563:2 #20 0x849d07 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7135:15 #21 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #22 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #23 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #24 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #25 0x89f5a3 in R_compileAndExecute /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1518:2 #26 0x89c41b in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:9 #27 0x82b95c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:802:12 #28 0x9638e7 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:2 #29 0x966cc0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314:11 #30 0x966ae9 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113:5 #31 0x966e42 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1120:5 #32 0x4de22a in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #33 0x7f066cd00081 in __libc_start_main (/lib64/libc.so.6+0x27081) #34 0x4312dd in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x4312dd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior main.c:53:9 in ================================================================= ==3461552==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7ffeeec7cf88 at pc 0x7f065c1d2cfd bp 0x7ffeeec7cf50 sp 0x7ffeeec7cf48 WRITE of size 8 at 0x7ffeeec7cf88 thread T0 #0 0x7f065c1d2cfc in hermite /data/gannet/ripley/R/packages/tests-clang-SAN/polynomial/src/main.c:53:20 #1 0x6e3cbd in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:598:17 #2 0x847463 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7671:21 #3 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #4 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #5 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #6 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #7 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #8 0x88e6a6 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:555:8 #9 0x8c0260 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5136:15 #10 0x8c0260 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5177:14 #11 0x862392 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6867:20 #12 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #13 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #14 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #15 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #16 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #17 0x88e6a6 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:555:8 #18 0x82bf8f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:763:6 #19 0x9b99e7 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:563:2 #20 0x849d07 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7135:15 #21 0x82b309 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:727:8 #22 0x895a30 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #23 0x890c57 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1823:16 #24 0x84f677 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7083:12 #25 0x89f5a3 in R_compileAndExecute /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1518:2 #26 0x89c41b in do_for /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:9 #27 0x82b95c in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:802:12 #28 0x9638e7 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:2 #29 0x966cc0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314:11 #30 0x966ae9 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113:5 #31 0x966e42 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1120:5 #32 0x4de22a in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #33 0x7f066cd00081 in __libc_start_main (/lib64/libc.so.6+0x27081) #34 0x4312dd in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x4312dd) Address 0x7ffeeec7cf88 is located in stack of thread T0 SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-SAN/polynomial/src/main.c:53:20 in hermite Shadow bytes around the buggy address: 0x10005dd879a0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd879b0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd879c0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd879d0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd879e0: 00 00 00 00 00 00 00 00 00 00 00 00 ca ca ca ca =>0x10005dd879f0: 00[cb]cb cb cb cb cb cb 00 00 00 00 00 00 00 00 0x10005dd87a00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd87a10: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd87a20: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd87a30: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10005dd87a40: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==3461552==ABORTING * DONE Status: 1 ERROR