* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-UBSAN/pathfindR.Rcheck’
* using R Under development (unstable) (2026-06-21 r90185)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
    flang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-06-23 03:30:27 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘pathfindR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pathfindR’ version ‘3.0.0’
* package encoding: UTF-8
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘pathfindR’ can be installed ... [74s/75s] OK
* used C++ compiler: ‘clang version 22.1.8 (https://github.com/llvm/llvm-project ca7933e47d3a3451d81e72ac174dcb5aa28b59d1)’
* checking package directory ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [45s/47s] OK
* checking tests ... [144s/155s] OK
  Running ‘testthat-active-snw.R’ [15s/16s]
  Running ‘testthat-clustering.R’ [11s/11s]
  Running ‘testthat-comparison.R’
  Running ‘testthat-data_generation.R’
  Running ‘testthat-enrichment.R’ [35s/41s]
  Running ‘testthat-run-pathfindr.R’
  Running ‘testthat-scoring.R’
  Running ‘testthat-search-and-enrichment-wrapper.R’ [6s/10s]
  Running ‘testthat-utility.R’ [18s/18s]
  Running ‘testthat-visualization.R’ [34s/35s]
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [96s/97s] OK
* DONE
Status: OK