--- re-building ‘quickstart.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘quickstart.Rmd’

--- re-building ‘visualization.Rmd’ using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "point_alpha" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "point_alpha" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "point_alpha" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "point_alpha" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "point_alpha" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "point_alpha" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "jitter" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "jitter" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "jitter" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "jitter" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "jitter" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "jitter" is not a graphical parameter
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘visualization.Rmd’

--- re-building ‘workflows.Rmd’ using rmarkdown
coordinate_transforms.cpp:243:48: runtime error: nan is outside the range of representable values of type 'long long'
    #0 0x7fa650627ff6 in hexify::(anonymous namespace)::quantize_class1(double, double, long long&, long long&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/coordinate_transforms.cpp:243:48
    #1 0x7fa650627aa5 in hexify::quad_xy_to_ij(int, double, double, int, int, int&, long long&, long long&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/coordinate_transforms.cpp
    #2 0x7fa6506282b1 in hexify::icosa_tri_to_quad_ij(int, double, double, int, int, int&, long long&, long long&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/coordinate_transforms.cpp:576:5
    #3 0x7fa650641da9 in cpp_lonlat_to_cell(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int, int) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/rcpp_cell.cpp:427:9
    #4 0x7fa650607284 in _hexify_cpp_lonlat_to_cell /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/RcppExports.cpp:479:34
    #5 0x55c354f8da45 in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8ea45)
    #6 0x55c354fdcdaf in bcEval_loop eval.c
    #7 0x55c354fc5beb in bcEval eval.c
    #8 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #9 0x55c354fe2768 in R_execClosure eval.c
    #10 0x55c354fe1c6b in applyClosure_core eval.c
    #11 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #12 0x55c354fe7d6d in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe8d6d)
    #13 0x55c354fc559f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc659f)
    #14 0x55c354fe91d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #15 0x55c354fcd7ea in bcEval_loop eval.c
    #16 0x55c354fc5beb in bcEval eval.c
    #17 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #18 0x55c354fc5e73 in forcePromise eval.c
    #19 0x55c354fc543d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #20 0x55c354fe96b6 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea6b6)
    #21 0x55c35502cbc7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12dbc7)
    #22 0x55c354fcda6b in bcEval_loop eval.c
    #23 0x55c354fc5beb in bcEval eval.c
    #24 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #25 0x55c354fc5e73 in forcePromise eval.c
    #26 0x55c354fc543d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #27 0x55c354fc5e73 in forcePromise eval.c
    #28 0x55c354fdeeef in getvar eval.c
    #29 0x55c354fca8d1 in bcEval_loop eval.c
    #30 0x55c354fc5beb in bcEval eval.c
    #31 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #32 0x55c354fe2768 in R_execClosure eval.c
    #33 0x55c354fe1c6b in applyClosure_core eval.c
    #34 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #35 0x55c354fe91d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #36 0x55c354fcd7ea in bcEval_loop eval.c
    #37 0x55c354fc5beb in bcEval eval.c
    #38 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #39 0x55c354fe2768 in R_execClosure eval.c
    #40 0x55c354fe1c6b in applyClosure_core eval.c
    #41 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #42 0x55c354fe2768 in R_execClosure eval.c
    #43 0x55c354fe1c6b in applyClosure_core eval.c
    #44 0x55c354fccff2 in bcEval_loop eval.c
    #45 0x55c354fc5beb in bcEval eval.c
    #46 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #47 0x55c354fe2768 in R_execClosure eval.c
    #48 0x55c354fe1c6b in applyClosure_core eval.c
    #49 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #50 0x55c355017717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x118717)
    #51 0x55c35501921e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a21e)
    #52 0x55c35501928a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a28a)
    #53 0x55c354f00da7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7)
    #54 0x7fa662d135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #55 0x7fa662d136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #56 0x55c354f00cc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior coordinate_transforms.cpp:243:48 
coordinate_transforms.cpp:244:48: runtime error: nan is outside the range of representable values of type 'long long'
    #0 0x7fa650628056 in hexify::(anonymous namespace)::quantize_class1(double, double, long long&, long long&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/coordinate_transforms.cpp:244:48
    #1 0x7fa650627aa5 in hexify::quad_xy_to_ij(int, double, double, int, int, int&, long long&, long long&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/coordinate_transforms.cpp
    #2 0x7fa6506282b1 in hexify::icosa_tri_to_quad_ij(int, double, double, int, int, int&, long long&, long long&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/coordinate_transforms.cpp:576:5
    #3 0x7fa650641da9 in cpp_lonlat_to_cell(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int, int) /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/rcpp_cell.cpp:427:9
    #4 0x7fa650607284 in _hexify_cpp_lonlat_to_cell /data/gannet/ripley/R/packages/tests-clang-UBSAN/hexify/src/RcppExports.cpp:479:34
    #5 0x55c354f8da45 in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8ea45)
    #6 0x55c354fdcdaf in bcEval_loop eval.c
    #7 0x55c354fc5beb in bcEval eval.c
    #8 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #9 0x55c354fe2768 in R_execClosure eval.c
    #10 0x55c354fe1c6b in applyClosure_core eval.c
    #11 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #12 0x55c354fe7d6d in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe8d6d)
    #13 0x55c354fc559f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc659f)
    #14 0x55c354fe91d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #15 0x55c354fcd7ea in bcEval_loop eval.c
    #16 0x55c354fc5beb in bcEval eval.c
    #17 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #18 0x55c354fc5e73 in forcePromise eval.c
    #19 0x55c354fc543d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #20 0x55c354fe96b6 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea6b6)
    #21 0x55c35502cbc7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12dbc7)
    #22 0x55c354fcda6b in bcEval_loop eval.c
    #23 0x55c354fc5beb in bcEval eval.c
    #24 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #25 0x55c354fc5e73 in forcePromise eval.c
    #26 0x55c354fc543d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #27 0x55c354fc5e73 in forcePromise eval.c
    #28 0x55c354fdeeef in getvar eval.c
    #29 0x55c354fca8d1 in bcEval_loop eval.c
    #30 0x55c354fc5beb in bcEval eval.c
    #31 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #32 0x55c354fe2768 in R_execClosure eval.c
    #33 0x55c354fe1c6b in applyClosure_core eval.c
    #34 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #35 0x55c354fe91d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #36 0x55c354fcd7ea in bcEval_loop eval.c
    #37 0x55c354fc5beb in bcEval eval.c
    #38 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #39 0x55c354fe2768 in R_execClosure eval.c
    #40 0x55c354fe1c6b in applyClosure_core eval.c
    #41 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #42 0x55c354fe2768 in R_execClosure eval.c
    #43 0x55c354fe1c6b in applyClosure_core eval.c
    #44 0x55c354fccff2 in bcEval_loop eval.c
    #45 0x55c354fc5beb in bcEval eval.c
    #46 0x55c354fc5374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #47 0x55c354fe2768 in R_execClosure eval.c
    #48 0x55c354fe1c6b in applyClosure_core eval.c
    #49 0x55c354fc57c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #50 0x55c355017717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x118717)
    #51 0x55c35501921e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a21e)
    #52 0x55c35501928a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a28a)
    #53 0x55c354f00da7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7)
    #54 0x7fa662d135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #55 0x7fa662d136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #56 0x55c354f00cc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior coordinate_transforms.cpp:244:48 
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘workflows.Rmd’