* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-SAN/extracat.Rcheck’
* using R Under development (unstable) (2019-03-19 r76250)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘extracat/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘extracat’ version ‘1.7-6’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘extracat’ can be installed ... [122s/132s] OK
* checking package directory ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking contents of ‘data’ directory ... OK
* checking compiled code ... OK
* checking examples ... ERROR
Running examples in ‘extracat-Ex.R’ failed
The error most likely occurred in:

> ### Name: sortandcut
> ### Title: Sort-and-Cut Reordering
> ### Aliases: sortandcut
> 
> ### ** Examples
> 
> M <- arsim(12000,c(30,40),7,noise=0.3)
> c1 <- cfluctile(M1<-optile(M, iter = 20))
> c2 <- cfluctile(M2<-sortandcut(M))
optile.c:1538:6: runtime error: index 2 out of bounds for type 'float [n]'
    #0 0x7fb7592d1b23 in getclust /data/gannet/ripley/R/packages/tests-clang-SAN/extracat/src/optile.c:1538:16
    #1 0x7fde6e in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:582:17
    #2 0x8738bd in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1252:11
    #3 0x9fa46d in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7283:21
    #4 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #5 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #6 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #7 0xa03126 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733:12
    #8 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #9 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #10 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #11 0x9de8f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12
    #12 0xa6fccc in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807:8
    #13 0x9de32a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695:12
    #14 0xa58d9a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8
    #15 0xa9fce9 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4897:15
    #16 0xa9fce9 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4970
    #17 0xa1007a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6517:20
    #18 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #19 0xa58d9a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8
    #20 0x9de3cf in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:656:6
    #21 0x9f463a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6765:14
    #22 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #23 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #24 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #25 0xa03126 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733:12
    #26 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #27 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #28 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #29 0x9de8f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12
    #30 0xa6fccc in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807:8
    #31 0x9de32a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695:12
    #32 0xb59be0 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260:2
    #33 0xb5e530 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310:11
    #34 0xb5e315 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1086:5
    #35 0x53df1a in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #36 0x7fb76aa3111a in __libc_start_main (/lib64/libc.so.6+0x2311a)
    #37 0x42f169 in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x42f169)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior optile.c:1538:6 in 
=================================================================
==47192==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7ffe7f9f7f88 at pc 0x7fb7592d38f2 bp 0x7ffe7f9f7e30 sp 0x7ffe7f9f7e28
WRITE of size 4 at 0x7ffe7f9f7f88 thread T0
    #0 0x7fb7592d38f1 in getclust /data/gannet/ripley/R/packages/tests-clang-SAN/extracat/src/optile.c:1538:16
    #1 0x7fde6e in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:582:17
    #2 0x8738bd in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1252:11
    #3 0x9fa46d in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7283:21
    #4 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #5 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #6 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #7 0xa03126 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733:12
    #8 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #9 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #10 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #11 0x9de8f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12
    #12 0xa6fccc in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807:8
    #13 0x9de32a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695:12
    #14 0xa58d9a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8
    #15 0xa9fce9 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4897:15
    #16 0xa9fce9 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4970
    #17 0xa1007a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6517:20
    #18 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #19 0xa58d9a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8
    #20 0x9de3cf in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:656:6
    #21 0x9f463a in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6765:14
    #22 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #23 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #24 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #25 0xa03126 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733:12
    #26 0x9dd71d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8
    #27 0xa603b7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c
    #28 0xa5d0a9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16
    #29 0x9de8f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12
    #30 0xa6fccc in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2807:8
    #31 0x9de32a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695:12
    #32 0xb59be0 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260:2
    #33 0xb5e530 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310:11
    #34 0xb5e315 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1086:5
    #35 0x53df1a in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #36 0x7fb76aa3111a in __libc_start_main (/lib64/libc.so.6+0x2311a)
    #37 0x42f169 in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x42f169)

Address 0x7ffe7f9f7f88 is located in stack of thread T0
SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-SAN/extracat/src/optile.c:1538:16 in getclust
Shadow bytes around the buggy address:
  0x10004ff36fa0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x10004ff36fb0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x10004ff36fc0: 00 00 00 00 00 00 00 00 ca ca ca ca 00 cb cb cb
  0x10004ff36fd0: cb cb cb cb ca ca ca ca 00 04 cb cb cb cb cb cb
  0x10004ff36fe0: ca ca ca ca 00 cb cb cb cb cb cb cb ca ca ca ca
=>0x10004ff36ff0: 00[cb]cb cb cb cb cb cb ca ca ca ca 00 cb cb cb
  0x10004ff37000: cb cb cb cb ca ca ca ca 00 04 cb cb cb cb cb cb
  0x10004ff37010: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x10004ff37020: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x10004ff37030: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x10004ff37040: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
  Shadow gap:              cc
==47192==ABORTING
* DONE
Status: 1 ERROR