R Under development (unstable) (2026-03-08 r89575) -- "Unsuffered Consequences"
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> library(testthat)
> library(epicR)
epicR: Using config files from: /data/gannet/ripley/.config/R/epicR/config
To reset configs to defaults, use: reset_user_configs()

Attaching package: 'epicR'

The following object is masked from 'package:stats':

    simulate

> 
> test_check("epicR")
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model for jurisdiction: CANADA
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: model_events.cpp:680:11: runtime error: index 3 out of bounds for type 'double[3]'
    #0 0x7fc94405991e in event_exacerbation_process(agent*) /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR/src/model_events.cpp:680:71
    #1 0x7fc9440421d5 in model_run(int) /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR/src/model.cpp:1603:11
    #2 0x7fc94400d526 in _epicR_model_run /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR/src/RcppExports.cpp:144:34
    #3 0x557a6c3a0510 in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8f510)
    #4 0x557a6c3e9f67 in bcEval_loop eval.c
    #5 0x557a6c3d80bb in bcEval eval.c
    #6 0x557a6c3d7844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844)
    #7 0x557a6c3ef8d8 in R_execClosure eval.c
    #8 0x557a6c3eeddb in applyClosure_core eval.c
    #9 0x557a6c3d7c95 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6c95)
    #10 0x557a6c3f3f4a in do_begin (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe2f4a)
    #11 0x557a6c3d7a6f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6a6f)
    #12 0x557a6c3f6277 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe5277)
    #13 0x557a6c3ded33 in bcEval_loop eval.c
    #14 0x557a6c3d80bb in bcEval eval.c
    #15 0x557a6c3d7844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844)
    #16 0x557a6c3ef8d8 in R_execClosure eval.c
    #17 0x557a6c3eeddb in applyClosure_core eval.c
    #18 0x557a6c3d7c95 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6c95)
    #19 0x557a6c3f6657 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe5657)
    #20 0x557a6c3ded33 in bcEval_loop eval.c
    #21 0x557a6c3d80bb in bcEval eval.c
    #22 0x557a6c3d7844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844)
    #23 0x557a6c3ef8d8 in R_execClosure eval.c
    #24 0x557a6c3eeddb in applyClosure_core eval.c
    #25 0x557a6c3f2294 in R_forceAndCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe1294)
    #26 0x557a6c3267eb in do_lapply (/data/gannet/ripley/R/R-clang/bin/exec/R+0x157eb)
    #27 0x557a6c4397a7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1287a7)
    #28 0x557a6c3def95 in bcEval_loop eval.c
    #29 0x557a6c3d80bb in bcEval eval.c
    #30 0x557a6c3d7844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844)
    #31 0x557a6c3ef8d8 in R_execClosure eval.c
    #32 0x557a6c3eeddb in applyClosure_core eval.c
    #33 0x557a6c3d7c95 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6c95)
    #34 0x557a6c424717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x113717)
    #35 0x557a6c42621e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11521e)
    #36 0x557a6c42628a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11528a)
    #37 0x557a6c312db7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1db7)
    #38 0x7fc954e12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #39 0x7fc954e12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #40 0x557a6c312cd4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cd4)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior model_events.cpp:680:11 
10% 20% 30% 40% 50%
60% 70% 80% 90% 100%
Terminating the session
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model (with custom input parameters)
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: 10% 20% 30% 40% 50%
60% 70% 80% 90% Terminating the session

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model for jurisdiction: CANADA
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: 10% 20% 30% 40% 50%
60% 70% 80% 90% 100%
Terminating the session
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model (with custom input parameters)
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: 10% 20% 30% 40% 50%
60% 70% 80% 90% 100%
Terminating the session
Terminating the session
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model for jurisdiction: CANADA
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: 10% 20% 30% 40% 50%
60% 70% 80% 90% 100%
Terminating the session
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model for jurisdiction: CANADA
Record mode: record_mode_event (2)
Simulating 60000 base agents: 10% 20% 30% 40% 50%
60% 70% 80% 90% 100%
Terminating the session
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model for jurisdiction: CANADA
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: 10% 20% 30% 40% 50%
60% 70% 80% 90% 100%
Terminating the session
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
test 1: zero all costs

Running EPIC model (with custom input parameters)
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: Test passed!
Terminating the session
test 2: zero all utilities

Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model (with custom input parameters)
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: Test passed!
Terminating the session
test 3: set all utilities to 1 and get one QALY without discount

Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model (with custom input parameters)
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: Test passed!
Terminating the session
test 4: zero mortality (both bg and exac)

Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model (with custom input parameters)
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: Test passed!
Terminating the session
Initializing the session
Working directory: /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR.Rcheck/tests/testthat
Running EPIC model for jurisdiction: CANADA
Record mode: record_mode_none (0)
Note: No events will be recorded. Use record_mode_event (2) or record_mode_agent (1) to record events.
Simulating 60000 base agents: 10% 20% 30% 40% 50%
60% 70% 80% 90% 100%
Terminating the session
[ FAIL 0 | WARN 3 | SKIP 9 | PASS 2372 ]

══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• Core source file not found (7): 'test-config-reload.R:135:3',
  'test-config-reload.R:169:3', 'test-seed-reproducibility.R:58:3',
  'test-seed-reproducibility.R:90:3', 'test-seed-reproducibility.R:135:3',
  'test-seed-reproducibility.R:210:3', 'test-seed-reproducibility.R:242:3'
• Input source file not found (1): 'test-config-reload.R:198:3'
• Source file not available (1): 'test-input-functions.R:144:3'

[ FAIL 0 | WARN 3 | SKIP 9 | PASS 2372 ]
> 
> proc.time()
   user  system elapsed 
213.376   7.840 268.651