--- re-building ‘AddingNewCountry.Rmd’ using rmarkdown --- finished re-building ‘AddingNewCountry.Rmd’ --- re-building ‘BackgroundEPIC.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘BackgroundEPIC.Rmd’ --- re-building ‘GettingStarted.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘GettingStarted.Rmd’ --- re-building ‘InputsOutputsStructure.Rmd’ using rmarkdown model_events.cpp:680:11: runtime error: index 3 out of bounds for type 'double[3]' #0 0x7f833c85991e in event_exacerbation_process(agent*) /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR/src/model_events.cpp:680:71 #1 0x7f833c8421d5 in model_run(int) /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR/src/model.cpp:1603:11 #2 0x7f833c80d526 in _epicR_model_run /data/gannet/ripley/R/packages/tests-clang-UBSAN/epicR/src/RcppExports.cpp:144:34 #3 0x556c10ddc510 in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8f510) #4 0x556c10e25f67 in bcEval_loop eval.c #5 0x556c10e140bb in bcEval eval.c #6 0x556c10e13844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844) #7 0x556c10e2b8d8 in R_execClosure eval.c #8 0x556c10e2addb in applyClosure_core eval.c #9 0x556c10e13c95 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6c95) #10 0x556c10e30e07 in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe3e07) #11 0x556c10e13a6f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6a6f) #12 0x556c10e32277 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe5277) #13 0x556c10e1ad33 in bcEval_loop eval.c #14 0x556c10e140bb in bcEval eval.c #15 0x556c10e13844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844) #16 0x556c10e14313 in forcePromise eval.c #17 0x556c10e1390d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc690d) #18 0x556c10e32756 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe5756) #19 0x556c10e757a7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1287a7) #20 0x556c10e1af95 in bcEval_loop eval.c #21 0x556c10e140bb in bcEval eval.c #22 0x556c10e13844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844) #23 0x556c10e14313 in forcePromise eval.c #24 0x556c10e1390d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc690d) #25 0x556c10e14313 in forcePromise eval.c #26 0x556c10e2806f in getvar eval.c #27 0x556c10e18748 in bcEval_loop eval.c #28 0x556c10e140bb in bcEval eval.c #29 0x556c10e13844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844) #30 0x556c10e2b8d8 in R_execClosure eval.c #31 0x556c10e2addb in applyClosure_core eval.c #32 0x556c10e13c95 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6c95) #33 0x556c10e32277 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe5277) #34 0x556c10e1ad33 in bcEval_loop eval.c #35 0x556c10e140bb in bcEval eval.c #36 0x556c10e13844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844) #37 0x556c10e2b8d8 in R_execClosure eval.c #38 0x556c10e2addb in applyClosure_core eval.c #39 0x556c10e13c95 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6c95) #40 0x556c10e2b8d8 in R_execClosure eval.c #41 0x556c10e2addb in applyClosure_core eval.c #42 0x556c10e1a5c2 in bcEval_loop eval.c #43 0x556c10e140bb in bcEval eval.c #44 0x556c10e13844 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6844) #45 0x556c10e2b8d8 in R_execClosure eval.c #46 0x556c10e2addb in applyClosure_core eval.c #47 0x556c10e13c95 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6c95) #48 0x556c10e60717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x113717) #49 0x556c10e6221e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11521e) #50 0x556c10e6228a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11528a) #51 0x556c10d4edb7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1db7) #52 0x7f8351a12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #53 0x7f8351a12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #54 0x556c10d4ecd4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cd4) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior model_events.cpp:680:11 --- finished re-building ‘InputsOutputsStructure.Rmd’