--- re-building ‘bayesianVARs-vignette.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘bayesianVARs-vignette.Rmd’

--- re-building ‘irf-vignette.Rmd’ using rmarkdown
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:59:10: runtime error: nan is outside the range of representable values of type 'int'
    #0 0x7f8a349b1472 in Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::equal<14>, true, Rcpp::ConstMatrixColumn<14>>::rhs_is_not_na(int) const /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:59:10
    #1 0x7f8a349b17b8 in Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::equal<14>, true, Rcpp::ConstMatrixColumn<14>>::operator[](long) const /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:45:10
    #2 0x7f8a349b17b8 in void Rcpp::Vector<10, Rcpp::PreserveStorage>::import_expression<Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::equal<14>, true, Rcpp::ConstMatrixColumn<14>>>(Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::equal<14>, true, Rcpp::ConstMatrixColumn<14>> const&, long) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:1082:9
    #3 0x7f8a3499dee0 in Rcpp::Vector<10, Rcpp::PreserveStorage>::Vector<true, Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::equal<14>, true, Rcpp::ConstMatrixColumn<14>>>(Rcpp::VectorBase<10, true, Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::equal<14>, true, Rcpp::ConstMatrixColumn<14>>> const&) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:164:9
    #4 0x7f8a3499dee0 in construct_zero_restriction(Rcpp::ConstMatrixColumn<14> const&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/irf.cpp:126:37
    #5 0x7f8a3499eb2c in find_rotation_cpp(arma::field<arma::Cube<double>> const&, arma::field<Rcpp::Matrix<14, Rcpp::PreserveStorage>> const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>> const&, unsigned int, double) /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/irf.cpp:391:30
    #6 0x7f8a349582c8 in _bayesianVARs_find_rotation_cpp /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/RcppExports.cpp:85:34
    #7 0x556677cc23fa in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8f3fa)
    #8 0x556677d10daf in bcEval_loop eval.c
    #9 0x556677cf9beb in bcEval eval.c
    #10 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #11 0x556677d16768 in R_execClosure eval.c
    #12 0x556677d15c6b in applyClosure_core eval.c
    #13 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #14 0x556677d1bd6d in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe8d6d)
    #15 0x556677cf959f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc659f)
    #16 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #17 0x556677d017ea in bcEval_loop eval.c
    #18 0x556677cf9beb in bcEval eval.c
    #19 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #20 0x556677cf9e73 in forcePromise eval.c
    #21 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #22 0x556677d1d6b6 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea6b6)
    #23 0x556677d60bc7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12dbc7)
    #24 0x556677d01a6b in bcEval_loop eval.c
    #25 0x556677cf9beb in bcEval eval.c
    #26 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #27 0x556677cf9e73 in forcePromise eval.c
    #28 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #29 0x556677cf9e73 in forcePromise eval.c
    #30 0x556677d12eef in getvar eval.c
    #31 0x556677cfe8d1 in bcEval_loop eval.c
    #32 0x556677cf9beb in bcEval eval.c
    #33 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #34 0x556677d16768 in R_execClosure eval.c
    #35 0x556677d15c6b in applyClosure_core eval.c
    #36 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #37 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #38 0x556677d017ea in bcEval_loop eval.c
    #39 0x556677cf9beb in bcEval eval.c
    #40 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #41 0x556677d16768 in R_execClosure eval.c
    #42 0x556677d15c6b in applyClosure_core eval.c
    #43 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #44 0x556677d16768 in R_execClosure eval.c
    #45 0x556677d15c6b in applyClosure_core eval.c
    #46 0x556677d00ff2 in bcEval_loop eval.c
    #47 0x556677cf9beb in bcEval eval.c
    #48 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #49 0x556677d16768 in R_execClosure eval.c
    #50 0x556677d15c6b in applyClosure_core eval.c
    #51 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #52 0x556677d4b717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x118717)
    #53 0x556677d4d21e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a21e)
    #54 0x556677d4d28a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a28a)
    #55 0x556677c34da7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7)
    #56 0x7f8a473135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #57 0x7f8a473136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #58 0x556677c34cc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:59:10 
/data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:59:10: runtime error: nan is outside the range of representable values of type 'int'
    #0 0x7f8a349b1e62 in Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::not_equal<14>, true, Rcpp::ConstMatrixColumn<14>>::rhs_is_not_na(int) const /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:59:10
    #1 0x7f8a349b20a8 in Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::not_equal<14>, true, Rcpp::ConstMatrixColumn<14>>::operator[](long) const /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:45:10
    #2 0x7f8a349b20a8 in void Rcpp::Vector<10, Rcpp::PreserveStorage>::import_expression<Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::not_equal<14>, true, Rcpp::ConstMatrixColumn<14>>>(Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::not_equal<14>, true, Rcpp::ConstMatrixColumn<14>> const&, long) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:1082:9
    #3 0x7f8a3499e193 in Rcpp::Vector<10, Rcpp::PreserveStorage>::Vector<true, Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::not_equal<14>, true, Rcpp::ConstMatrixColumn<14>>>(Rcpp::VectorBase<10, true, Rcpp::sugar::Comparator_With_One_Value<14, Rcpp::sugar::not_equal<14>, true, Rcpp::ConstMatrixColumn<14>>> const&) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:164:9
    #4 0x7f8a3499e193 in construct_sign_restriction(Rcpp::ConstMatrixColumn<14> const&) /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/irf.cpp:140:42
    #5 0x7f8a3499ed98 in find_rotation_cpp(arma::field<arma::Cube<double>> const&, arma::field<Rcpp::Matrix<14, Rcpp::PreserveStorage>> const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>> const&, unsigned int, double) /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/irf.cpp:392:30
    #6 0x7f8a349582c8 in _bayesianVARs_find_rotation_cpp /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/RcppExports.cpp:85:34
    #7 0x556677cc23fa in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8f3fa)
    #8 0x556677d10daf in bcEval_loop eval.c
    #9 0x556677cf9beb in bcEval eval.c
    #10 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #11 0x556677d16768 in R_execClosure eval.c
    #12 0x556677d15c6b in applyClosure_core eval.c
    #13 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #14 0x556677d1bd6d in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe8d6d)
    #15 0x556677cf959f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc659f)
    #16 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #17 0x556677d017ea in bcEval_loop eval.c
    #18 0x556677cf9beb in bcEval eval.c
    #19 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #20 0x556677cf9e73 in forcePromise eval.c
    #21 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #22 0x556677d1d6b6 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea6b6)
    #23 0x556677d60bc7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12dbc7)
    #24 0x556677d01a6b in bcEval_loop eval.c
    #25 0x556677cf9beb in bcEval eval.c
    #26 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #27 0x556677cf9e73 in forcePromise eval.c
    #28 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #29 0x556677cf9e73 in forcePromise eval.c
    #30 0x556677d12eef in getvar eval.c
    #31 0x556677cfe8d1 in bcEval_loop eval.c
    #32 0x556677cf9beb in bcEval eval.c
    #33 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #34 0x556677d16768 in R_execClosure eval.c
    #35 0x556677d15c6b in applyClosure_core eval.c
    #36 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #37 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #38 0x556677d017ea in bcEval_loop eval.c
    #39 0x556677cf9beb in bcEval eval.c
    #40 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #41 0x556677d16768 in R_execClosure eval.c
    #42 0x556677d15c6b in applyClosure_core eval.c
    #43 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #44 0x556677d16768 in R_execClosure eval.c
    #45 0x556677d15c6b in applyClosure_core eval.c
    #46 0x556677d00ff2 in bcEval_loop eval.c
    #47 0x556677cf9beb in bcEval eval.c
    #48 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #49 0x556677d16768 in R_execClosure eval.c
    #50 0x556677d15c6b in applyClosure_core eval.c
    #51 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #52 0x556677d4b717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x118717)
    #53 0x556677d4d21e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a21e)
    #54 0x556677d4d28a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a28a)
    #55 0x556677c34da7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7)
    #56 0x7f8a473135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #57 0x7f8a473136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #58 0x556677c34cc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:59:10 
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7005:10: runtime error: reference binding to null pointer of type 'const double'
    #0 0x7f8a349396aa in arma::Mat<double>::at(unsigned int, unsigned int) const /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7005:3
    #1 0x7f8a349396aa in void arma::op_strans::apply_mat_noalias<double, arma::Mat<double>>(arma::Mat<double>&, arma::Mat<double> const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/op_strans_meat.hpp:208:30
    #2 0x7f8a3499f875 in void arma::op_strans::apply_direct<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>>(arma::Mat_noalias<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>::elem_type>&, arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>> const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/op_strans_meat.hpp:445:5
    #3 0x7f8a3499f875 in void arma::op_htrans::apply<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>>(arma::Mat_noalias<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>::elem_type>&, arma::Op<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>, arma::op_htrans> const&, arma::arma_not_cx<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>::elem_type>::result const*) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/op_htrans_meat.hpp:388:3
    #4 0x7f8a3499f875 in arma::Mat<double>::Mat<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>, arma::op_htrans>(arma::Op<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>, arma::op_htrans> const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:5309:3
    #5 0x7f8a3499f875 in find_rotation_cpp(arma::field<arma::Cube<double>> const&, arma::field<Rcpp::Matrix<14, Rcpp::PreserveStorage>> const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>> const&, unsigned int, double) /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/irf.cpp:412:27
    #6 0x7f8a349582c8 in _bayesianVARs_find_rotation_cpp /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/RcppExports.cpp:85:34
    #7 0x556677cc23fa in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8f3fa)
    #8 0x556677d10daf in bcEval_loop eval.c
    #9 0x556677cf9beb in bcEval eval.c
    #10 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #11 0x556677d16768 in R_execClosure eval.c
    #12 0x556677d15c6b in applyClosure_core eval.c
    #13 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #14 0x556677d1bd6d in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe8d6d)
    #15 0x556677cf959f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc659f)
    #16 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #17 0x556677d017ea in bcEval_loop eval.c
    #18 0x556677cf9beb in bcEval eval.c
    #19 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #20 0x556677cf9e73 in forcePromise eval.c
    #21 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #22 0x556677d1d6b6 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea6b6)
    #23 0x556677d60bc7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12dbc7)
    #24 0x556677d01a6b in bcEval_loop eval.c
    #25 0x556677cf9beb in bcEval eval.c
    #26 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #27 0x556677cf9e73 in forcePromise eval.c
    #28 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #29 0x556677cf9e73 in forcePromise eval.c
    #30 0x556677d12eef in getvar eval.c
    #31 0x556677cfe8d1 in bcEval_loop eval.c
    #32 0x556677cf9beb in bcEval eval.c
    #33 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #34 0x556677d16768 in R_execClosure eval.c
    #35 0x556677d15c6b in applyClosure_core eval.c
    #36 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #37 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #38 0x556677d017ea in bcEval_loop eval.c
    #39 0x556677cf9beb in bcEval eval.c
    #40 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #41 0x556677d16768 in R_execClosure eval.c
    #42 0x556677d15c6b in applyClosure_core eval.c
    #43 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #44 0x556677d16768 in R_execClosure eval.c
    #45 0x556677d15c6b in applyClosure_core eval.c
    #46 0x556677d00ff2 in bcEval_loop eval.c
    #47 0x556677cf9beb in bcEval eval.c
    #48 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #49 0x556677d16768 in R_execClosure eval.c
    #50 0x556677d15c6b in applyClosure_core eval.c
    #51 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #52 0x556677d4b717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x118717)
    #53 0x556677d4d21e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a21e)
    #54 0x556677d4d28a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a28a)
    #55 0x556677c34da7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7)
    #56 0x7f8a473135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #57 0x7f8a473136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #58 0x556677c34cc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7005:10 
/data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7005:10: runtime error: applying non-zero offset 8 to null pointer
    #0 0x7f8a34939668 in arma::Mat<double>::at(unsigned int, unsigned int) const /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7005:10
    #1 0x7f8a34939668 in void arma::op_strans::apply_mat_noalias<double, arma::Mat<double>>(arma::Mat<double>&, arma::Mat<double> const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/op_strans_meat.hpp:208:30
    #2 0x7f8a3499f875 in void arma::op_strans::apply_direct<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>>(arma::Mat_noalias<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>::elem_type>&, arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>> const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/op_strans_meat.hpp:445:5
    #3 0x7f8a3499f875 in void arma::op_htrans::apply<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>>(arma::Mat_noalias<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>::elem_type>&, arma::Op<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>, arma::op_htrans> const&, arma::arma_not_cx<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>::elem_type>::result const*) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/op_htrans_meat.hpp:388:3
    #4 0x7f8a3499f875 in arma::Mat<double>::Mat<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>, arma::op_htrans>(arma::Op<arma::subview_elem2<double, arma::subview<unsigned int>, arma::subview<unsigned int>>, arma::op_htrans> const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:5309:3
    #5 0x7f8a3499f875 in find_rotation_cpp(arma::field<arma::Cube<double>> const&, arma::field<Rcpp::Matrix<14, Rcpp::PreserveStorage>> const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char>> const&, unsigned int, double) /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/irf.cpp:412:27
    #6 0x7f8a349582c8 in _bayesianVARs_find_rotation_cpp /data/gannet/ripley/R/packages/tests-clang-UBSAN/bayesianVARs/src/RcppExports.cpp:85:34
    #7 0x556677cc23fa in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8f3fa)
    #8 0x556677d10daf in bcEval_loop eval.c
    #9 0x556677cf9beb in bcEval eval.c
    #10 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #11 0x556677d16768 in R_execClosure eval.c
    #12 0x556677d15c6b in applyClosure_core eval.c
    #13 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #14 0x556677d1bd6d in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe8d6d)
    #15 0x556677cf959f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc659f)
    #16 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #17 0x556677d017ea in bcEval_loop eval.c
    #18 0x556677cf9beb in bcEval eval.c
    #19 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #20 0x556677cf9e73 in forcePromise eval.c
    #21 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #22 0x556677d1d6b6 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea6b6)
    #23 0x556677d60bc7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12dbc7)
    #24 0x556677d01a6b in bcEval_loop eval.c
    #25 0x556677cf9beb in bcEval eval.c
    #26 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #27 0x556677cf9e73 in forcePromise eval.c
    #28 0x556677cf943d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d)
    #29 0x556677cf9e73 in forcePromise eval.c
    #30 0x556677d12eef in getvar eval.c
    #31 0x556677cfe8d1 in bcEval_loop eval.c
    #32 0x556677cf9beb in bcEval eval.c
    #33 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #34 0x556677d16768 in R_execClosure eval.c
    #35 0x556677d15c6b in applyClosure_core eval.c
    #36 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #37 0x556677d1d1d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7)
    #38 0x556677d017ea in bcEval_loop eval.c
    #39 0x556677cf9beb in bcEval eval.c
    #40 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #41 0x556677d16768 in R_execClosure eval.c
    #42 0x556677d15c6b in applyClosure_core eval.c
    #43 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #44 0x556677d16768 in R_execClosure eval.c
    #45 0x556677d15c6b in applyClosure_core eval.c
    #46 0x556677d00ff2 in bcEval_loop eval.c
    #47 0x556677cf9beb in bcEval eval.c
    #48 0x556677cf9374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374)
    #49 0x556677d16768 in R_execClosure eval.c
    #50 0x556677d15c6b in applyClosure_core eval.c
    #51 0x556677cf97c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5)
    #52 0x556677d4b717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x118717)
    #53 0x556677d4d21e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a21e)
    #54 0x556677d4d28a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a28a)
    #55 0x556677c34da7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7)
    #56 0x7f8a473135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #57 0x7f8a473136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #58 0x556677c34cc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /data/gannet/ripley/R/test-clang/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7005:10 
--- finished re-building ‘irf-vignette.Rmd’

--- re-building ‘scalability-vignette.qmd’ using html


processing file: scalability-vignette.qmd
output file: scalability-vignette.knit.md

pandoc 
  to: html
  output-file: scalability-vignette.html
  standalone: true
  embed-resources: true
  wrap: none
  default-image-extension: png
  css:
    - >-
      /data/gannet/ripley/R/test-clang/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
  variables: {}
  
metadata
  document-css: false
  lang: en
  minimal: true
  theme: none
  title: Scalability of bayesianVARs
  author: Luis Gruber
  bibliography:
    - huge.bib
  vignette: |
    %\VignetteIndexEntry{Scalability of bayesianVARs} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
  knitr:
    opts_chunk:
      collapse: true
      comment: '#>'
  
Output created: scalability-vignette.html

--- finished re-building ‘scalability-vignette.qmd’