* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-SAN/artemis.Rcheck’ * using R Under development (unstable) (2021-09-21 r80944) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘artemis/DESCRIPTION’ ... OK * this is package ‘artemis’ version ‘1.1.1’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘artemis’ can be installed ... [23m/16m] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [105s/230s] OK * checking tests ... [60m/80m] ERROR Running ‘testthat.R’ [60m/80m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(artemis) Loading required package: ggplot2 Loading required package: loo This is loo version 2.4.1 - Online documentation and vignettes at mc-stan.org/loo - As of v2.0.0 loo defaults to 1 core but we recommend using as many as possible. Use the 'cores' argument or set options(mc.cores = NUM_CORES) for an entire session. Attaching package: 'loo' The following object is masked from 'package:testthat': compare > > test_check("artemis") SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000994 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.94 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 7.68573 seconds (Warm-up) Chain 1: 7.0469 seconds (Sampling) Chain 1: 14.7326 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 2). Chain 2: Rejecting initial value: Chain 2: Log probability evaluates to log(0), i.e. negative infinity. Chain 2: Stan can't start sampling from this initial value. Chain 2: Chain 2: Gradient evaluation took 0 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 7.21504 seconds (Warm-up) Chain 2: 7.14838 seconds (Sampling) Chain 2: 14.3634 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000994 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 9.94 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 6.93836 seconds (Warm-up) Chain 3: 8.21387 seconds (Sampling) Chain 3: 15.1522 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 7.54523 seconds (Warm-up) Chain 4: 7.10806 seconds (Sampling) Chain 4: 14.6533 seconds (Total) Chain 4: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.002969 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 29.69 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 331.69 seconds (Warm-up) Chain 1: 318.978 seconds (Sampling) Chain 1: 650.668 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 2). Chain 2: Rejecting initial value: Chain 2: Log probability evaluates to log(0), i.e. negative infinity. Chain 2: Stan can't start sampling from this initial value. Chain 2: Chain 2: Gradient evaluation took 0.002979 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 29.79 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 204.153 seconds (Warm-up) Chain 2: 223.835 seconds (Sampling) Chain 2: 427.988 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.002963 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 29.63 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 197.268 seconds (Warm-up) Chain 3: 284.899 seconds (Sampling) Chain 3: 482.167 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.003946 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 39.46 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 273.374 seconds (Warm-up) Chain 4: 269.979 seconds (Sampling) Chain 4: 543.353 seconds (Total) Chain 4: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 1). Chain 1: Rejecting initial value: Chain 1: Log probability evaluates to log(0), i.e. negative infinity. Chain 1: Stan can't start sampling from this initial value. Chain 1: Chain 1: Gradient evaluation took 0.000947 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.47 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 4.52138 seconds (Warm-up) Chain 1: 4.23476 seconds (Sampling) Chain 1: 8.75614 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 2). Chain 2: Rejecting initial value: Chain 2: Log probability evaluates to log(0), i.e. negative infinity. Chain 2: Stan can't start sampling from this initial value. Chain 2: Rejecting initial value: Chain 2: Log probability evaluates to log(0), i.e. negative infinity. Chain 2: Stan can't start sampling from this initial value. Chain 2: Chain 2: Gradient evaluation took 0.000994 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 9.94 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 4.32634 seconds (Warm-up) Chain 2: 4.65592 seconds (Sampling) Chain 2: 8.98227 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000993 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 9.93 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 4.30815 seconds (Warm-up) Chain 3: 4.5587 seconds (Sampling) Chain 3: 8.86685 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 4.41193 seconds (Warm-up) Chain 4: 4.14339 seconds (Sampling) Chain 4: 8.55533 seconds (Total) Chain 4: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000994 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.94 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 7.86552 seconds (Warm-up) Chain 1: 8.4432 seconds (Sampling) Chain 1: 16.3087 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 7.02804 seconds (Warm-up) Chain 2: 7.76806 seconds (Sampling) Chain 2: 14.7961 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 6.85029 seconds (Warm-up) Chain 3: 6.94054 seconds (Sampling) Chain 3: 13.7908 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 4: Adjust your expectations accordingly! 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Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 4.45716 seconds (Warm-up) Chain 1: 4.27507 seconds (Sampling) Chain 1: 8.73223 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 2). Chain 2: Rejecting initial value: Chain 2: Log probability evaluates to log(0), i.e. negative infinity. Chain 2: Stan can't start sampling from this initial value. Chain 2: Rejecting initial value: Chain 2: Log probability evaluates to log(0), i.e. negative infinity. Chain 2: Stan can't start sampling from this initial value. Chain 2: Chain 2: Gradient evaluation took 0.000994 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 9.94 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 4.37239 seconds (Warm-up) Chain 2: 4.16681 seconds (Sampling) Chain 2: 8.5392 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 3). Chain 3: Rejecting initial value: Chain 3: Log probability evaluates to log(0), i.e. negative infinity. Chain 3: Stan can't start sampling from this initial value. Chain 3: Chain 3: Gradient evaluation took 0 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 4.1749 seconds (Warm-up) Chain 3: 4.23109 seconds (Sampling) Chain 3: 8.40599 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.000994 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 9.94 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 4.05801 seconds (Warm-up) Chain 4: 3.54757 seconds (Sampling) Chain 4: 7.60558 seconds (Total) Chain 4: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:374:24: runtime error: applying non-zero offset 8 to null pointer #0 0x7f84e2feea8a in Eigen::internal::BlockImpl_dense const, -1, -1, false, true>::BlockImpl_dense(Eigen::Matrix const&, long, long, long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:374:24 #1 0x7f84e2fed664 in Eigen::BlockImpl const, -1, -1, false, Eigen::Dense>::BlockImpl(Eigen::Matrix const&, long, long, long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:166:9 #2 0x7f84e2fed664 in Eigen::Block const, -1, -1, false>::Block(Eigen::Matrix const&, long, long, long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:142:9 #3 0x7f84e2fed664 in Eigen::DenseBase >::block(long, long, long, long) const /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/../plugins/BlockMethods.h:73:10 #4 0x7f84e2fed664 in Eigen::Matrix stan::math::get_base1(Eigen::Matrix const&, unsigned long, char const*, unsigned long) /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/mat/fun/get_base1.hpp:255:12 #5 0x7f84e2febfab in void model_eDNA_lm_namespace::model_eDNA_lm::write_array, boost::random::linear_congruential_engine > >(boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, std::__1::vector >&, std::__1::vector >&, std::__1::vector >&, bool, bool, std::__1::basic_ostream >*) const /data/gannet/ripley/R/packages/tests-clang-SAN/artemis/src/./stanExports_eDNA_lm.h:532:238 #6 0x7f84e3126aaf in void stan::services::util::mcmc_writer::write_sample_params, boost::random::linear_congruential_engine > >(boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, model_eDNA_lm_namespace::model_eDNA_lm&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/mcmc_writer.hpp:111:13 #7 0x7f84e3125dc0 in void stan::services::util::generate_transitions, boost::random::linear_congruential_engine > >(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, model_eDNA_lm_namespace::model_eDNA_lm&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, stan::callbacks::interrupt&, stan::callbacks::logger&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/generate_transitions.hpp:67:19 #8 0x7f84e319394e in void stan::services::util::run_adaptive_sampler, boost::random::linear_congruential_engine > >, model_eDNA_lm_namespace::model_eDNA_lm, boost::random::additive_combine_engine, boost::random::linear_congruential_engine > >(stan::mcmc::adapt_diag_e_nuts, boost::random::linear_congruential_engine > >&, model_eDNA_lm_namespace::model_eDNA_lm&, std::__1::vector >&, int, int, int, int, bool, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:67:3 #9 0x7f84e31928b1 in int stan::services::sample::hmc_nuts_diag_e_adapt(model_eDNA_lm_namespace::model_eDNA_lm&, stan::io::var_context&, stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp:98:3 #10 0x7f84e30a25a8 in int stan::services::sample::hmc_nuts_diag_e_adapt(model_eDNA_lm_namespace::model_eDNA_lm&, stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp:150:10 #11 0x7f84e2ec01b0 in int rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine > >(rstan::stan_args&, model_eDNA_lm_namespace::model_eDNA_lm&, Rcpp::Vector<19, Rcpp::PreserveStorage>&, std::__1::vector > const&, std::__1::vector, std::__1::allocator >, std::__1::allocator, std::__1::allocator > > > const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&) /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:653:25 #12 0x7f84e2ecc43a in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1201:11 #13 0x7f84e2f42091 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/module/class.h:234:23 #14 0x7f84f3c287e8 in CppMethod__invoke_notvoid(SEXPREC*) /tmp/Rtmpg8CFhz/R.INSTALL2d9d23734a00f0/Rcpp/src/module.cpp:220:19 #15 0x6c6f7d in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576:11 #16 0x81b7af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:843:9 #17 0x88ece2 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2530:10 #18 0x81b3a8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:815:12 #19 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #20 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #21 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #22 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #23 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #24 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #25 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #26 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #27 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #28 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #29 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #30 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #31 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #32 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #33 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #34 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #35 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #36 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #37 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #38 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #39 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #40 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #41 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #42 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #43 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #44 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #45 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #46 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #47 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #48 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #49 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #50 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #51 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #52 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #53 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #54 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #55 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #56 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #57 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #58 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #59 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #60 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #61 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #62 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #63 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #64 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #65 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #66 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #67 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #68 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #69 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #70 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #71 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #72 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #73 0x887eda in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2086:11 #74 0x7f84f833dd2b in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1145:19 #75 0x9ab446 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1285:13 #76 0x83b2f4 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7085:12 #77 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #78 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #79 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #80 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #81 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #82 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #83 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #84 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #85 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #86 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #87 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #88 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #89 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #90 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #91 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #92 0x81b9f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:863:12 #93 0x88fe46 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2982:8 #94 0x81b3a8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:815:12 #95 0x88ece2 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2530:10 #96 0x81b3a8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:815:12 #97 0x8956d5 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3357:13 #98 0x8326e8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7128:14 #99 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #100 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #101 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #102 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #103 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #104 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #105 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #106 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #107 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #108 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #109 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #110 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #111 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #112 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #113 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #114 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #115 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #116 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #117 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #118 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #119 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #120 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #121 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #122 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #123 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #124 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #125 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #126 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #127 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #128 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #129 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #130 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #131 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #132 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #133 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #134 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #135 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #136 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #137 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #138 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #139 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #140 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #141 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #142 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #143 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #144 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #145 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #146 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #147 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #148 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #149 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #150 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #151 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #152 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #153 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #154 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #155 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #156 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #157 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #158 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #159 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #160 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #161 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #162 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #163 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #164 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #165 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #166 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #167 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #168 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #169 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #170 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #171 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #172 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #173 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #174 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #175 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #176 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #177 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #178 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #179 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #180 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #181 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #182 0x81b9f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:863:12 #183 0x895fbc in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3380:9 #184 0x8326e8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7128:14 #185 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #186 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #187 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #188 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #189 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #190 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #191 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #192 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #193 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #194 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #195 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #196 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #197 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #198 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #199 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #200 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #201 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #202 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #203 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #204 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #205 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #206 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #207 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #208 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #209 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #210 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #211 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #212 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #213 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #214 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #215 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #216 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #217 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #218 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #219 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #220 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #221 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #222 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #223 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #224 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #225 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #226 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #227 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #228 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #229 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #230 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #231 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #232 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #233 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #234 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #235 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #236 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #237 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #238 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #239 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #240 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #241 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #242 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #243 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #244 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #245 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #246 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #247 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #248 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #249 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #250 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #251 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #252 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #253 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #254 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #255 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #256 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #257 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #258 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #259 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #260 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #261 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #262 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #263 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #264 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #265 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #266 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #267 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #268 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #269 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #270 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #271 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #272 0x88678f in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1977:8 #273 0x524aaf in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:70:8 #274 0x9977f4 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1396:11 #275 0x830649 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7148:15 SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:374:24 in /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:374:81: runtime error: subtraction of unsigned offset from 0x000000000008 overflowed to 0x000000000008 #0 0x7f84e2feea9e in Eigen::internal::BlockImpl_dense const, -1, -1, false, true>::BlockImpl_dense(Eigen::Matrix const&, long, long, long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:374:81 #1 0x7f84e2fed664 in Eigen::BlockImpl const, -1, -1, false, Eigen::Dense>::BlockImpl(Eigen::Matrix const&, long, long, long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:166:9 #2 0x7f84e2fed664 in Eigen::Block const, -1, -1, false>::Block(Eigen::Matrix const&, long, long, long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:142:9 #3 0x7f84e2fed664 in Eigen::DenseBase >::block(long, long, long, long) const /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/../plugins/BlockMethods.h:73:10 #4 0x7f84e2fed664 in Eigen::Matrix stan::math::get_base1(Eigen::Matrix const&, unsigned long, char const*, unsigned long) /data/gannet/ripley/R/test-clang/StanHeaders/include/stan/math/prim/mat/fun/get_base1.hpp:255:12 #5 0x7f84e2febfab in void model_eDNA_lm_namespace::model_eDNA_lm::write_array, boost::random::linear_congruential_engine > >(boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, std::__1::vector >&, std::__1::vector >&, std::__1::vector >&, bool, bool, std::__1::basic_ostream >*) const /data/gannet/ripley/R/packages/tests-clang-SAN/artemis/src/./stanExports_eDNA_lm.h:532:238 #6 0x7f84e3126aaf in void stan::services::util::mcmc_writer::write_sample_params, boost::random::linear_congruential_engine > >(boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, model_eDNA_lm_namespace::model_eDNA_lm&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/mcmc_writer.hpp:111:13 #7 0x7f84e3125dc0 in void stan::services::util::generate_transitions, boost::random::linear_congruential_engine > >(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, model_eDNA_lm_namespace::model_eDNA_lm&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, stan::callbacks::interrupt&, stan::callbacks::logger&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/generate_transitions.hpp:67:19 #8 0x7f84e319394e in void stan::services::util::run_adaptive_sampler, boost::random::linear_congruential_engine > >, model_eDNA_lm_namespace::model_eDNA_lm, boost::random::additive_combine_engine, boost::random::linear_congruential_engine > >(stan::mcmc::adapt_diag_e_nuts, boost::random::linear_congruential_engine > >&, model_eDNA_lm_namespace::model_eDNA_lm&, std::__1::vector >&, int, int, int, int, bool, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:67:3 #9 0x7f84e31928b1 in int stan::services::sample::hmc_nuts_diag_e_adapt(model_eDNA_lm_namespace::model_eDNA_lm&, stan::io::var_context&, stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp:98:3 #10 0x7f84e30a25a8 in int stan::services::sample::hmc_nuts_diag_e_adapt(model_eDNA_lm_namespace::model_eDNA_lm&, stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) /data/gannet/ripley/R/test-clang/StanHeaders/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp:150:10 #11 0x7f84e2ec01b0 in int rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine > >(rstan::stan_args&, model_eDNA_lm_namespace::model_eDNA_lm&, Rcpp::Vector<19, Rcpp::PreserveStorage>&, std::__1::vector > const&, std::__1::vector, std::__1::allocator >, std::__1::allocator, std::__1::allocator > > > const&, boost::random::additive_combine_engine, boost::random::linear_congruential_engine >&) /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:653:25 #12 0x7f84e2ecc43a in rstan::stan_fit, boost::random::linear_congruential_engine > >::call_sampler(SEXPREC*) /data/gannet/ripley/R/test-clang/rstan/include/rstan/stan_fit.hpp:1201:11 #13 0x7f84e2f42091 in Rcpp::class_, boost::random::linear_congruential_engine > > >::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/module/class.h:234:23 #14 0x7f84f3c287e8 in CppMethod__invoke_notvoid(SEXPREC*) /tmp/Rtmpg8CFhz/R.INSTALL2d9d23734a00f0/Rcpp/src/module.cpp:220:19 #15 0x6c6f7d in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576:11 #16 0x81b7af in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:843:9 #17 0x88ece2 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2530:10 #18 0x81b3a8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:815:12 #19 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #20 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #21 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #22 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #23 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #24 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #25 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #26 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #27 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #28 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #29 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #30 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #31 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #32 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #33 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #34 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #35 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #36 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #37 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #38 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #39 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #40 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #41 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #42 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #43 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #44 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #45 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #46 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #47 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #48 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #49 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #50 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #51 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #52 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #53 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #54 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #55 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #56 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #57 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #58 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #59 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #60 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #61 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #62 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #63 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #64 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #65 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #66 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #67 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #68 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #69 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #70 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #71 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #72 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #73 0x887eda in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2086:11 #74 0x7f84f833dd2b in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1145:19 #75 0x9ab446 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1285:13 #76 0x83b2f4 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7085:12 #77 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #78 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #79 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #80 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #81 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #82 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #83 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #84 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #85 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #86 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #87 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #88 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #89 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #90 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #91 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #92 0x81b9f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:863:12 #93 0x88fe46 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2982:8 #94 0x81b3a8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:815:12 #95 0x88ece2 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2530:10 #96 0x81b3a8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:815:12 #97 0x8956d5 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3357:13 #98 0x8326e8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7128:14 #99 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #100 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #101 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #102 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #103 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #104 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #105 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #106 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #107 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #108 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #109 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #110 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #111 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #112 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #113 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #114 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #115 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #116 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #117 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #118 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #119 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #120 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #121 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #122 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #123 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #124 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #125 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #126 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #127 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #128 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #129 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #130 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #131 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #132 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #133 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #134 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #135 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #136 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #137 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #138 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #139 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #140 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #141 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #142 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #143 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #144 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #145 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #146 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #147 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #148 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #149 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #150 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #151 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #152 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #153 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #154 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #155 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #156 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #157 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #158 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #159 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #160 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #161 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #162 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #163 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #164 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #165 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #166 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #167 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #168 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #169 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #170 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #171 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #172 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #173 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #174 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #175 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #176 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #177 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #178 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #179 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #180 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #181 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #182 0x81b9f8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:863:12 #183 0x895fbc in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3380:9 #184 0x8326e8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7128:14 #185 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #186 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #187 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #188 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #189 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #190 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #191 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #192 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #193 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #194 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #195 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #196 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #197 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #198 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #199 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #200 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #201 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #202 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #203 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #204 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #205 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #206 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #207 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #208 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #209 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #210 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #211 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #212 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #213 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #214 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #215 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #216 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #217 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #218 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #219 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #220 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #221 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #222 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #223 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #224 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #225 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #226 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #227 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #228 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #229 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #230 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #231 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #232 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #233 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #234 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #235 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #236 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #237 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #238 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #239 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #240 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #241 0x87cc11 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:568:8 #242 0x8ad870 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5149:15 #243 0x8ad870 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5190:14 #244 0x8528a6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6880:20 #245 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #246 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #247 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #248 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #249 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #250 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #251 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #252 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #253 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #254 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #255 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #256 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #257 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #258 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #259 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #260 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #261 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #262 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #263 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #264 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #265 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #266 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #267 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #268 0x83fa0f in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7096:12 #269 0x81afbe in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:740:8 #270 0x883dc7 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #271 0x87f72f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1836:16 #272 0x88678f in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1977:8 #273 0x524aaf in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:70:8 #274 0x9977f4 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1396:11 #275 0x830649 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7148:15 SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Block.h:374:81 in Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 3.10261 seconds (Warm-up) Chain 1: 2.55622 seconds (Sampling) Chain 1: 5.65883 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 3.07127 seconds (Warm-up) Chain 2: 2.91982 seconds (Sampling) Chain 2: 5.9911 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000995 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 9.95 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 2.92841 seconds (Warm-up) Chain 3: 2.75987 seconds (Sampling) Chain 3: 5.68828 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 2.8151 seconds (Warm-up) Chain 4: 2.33263 seconds (Sampling) Chain 4: 5.14773 seconds (Total) Chain 4: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.003974 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 39.74 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 126.55 seconds (Warm-up) Chain 1: 138.717 seconds (Sampling) Chain 1: 265.267 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.002984 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 29.84 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 134.636 seconds (Warm-up) Chain 2: 129.355 seconds (Sampling) Chain 2: 263.991 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.002986 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 29.86 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 128.413 seconds (Warm-up) Chain 3: 143.823 seconds (Sampling) Chain 3: 272.236 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lmer' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.002936 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 29.36 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 140.411 seconds (Warm-up) Chain 4: 131.488 seconds (Sampling) Chain 4: 271.899 seconds (Total) Chain 4: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 7.48123 seconds (Warm-up) Chain 1: 7.03472 seconds (Sampling) Chain 1: 14.516 seconds (Total) Chain 1: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 7.34666 seconds (Warm-up) Chain 2: 6.90617 seconds (Sampling) Chain 2: 14.2528 seconds (Total) Chain 2: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 3). Chain 3: Rejecting initial value: Chain 3: Log probability evaluates to log(0), i.e. negative infinity. Chain 3: Stan can't start sampling from this initial value. Chain 3: Chain 3: Gradient evaluation took 0.000983 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 9.83 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 7.20289 seconds (Warm-up) Chain 3: 7.21636 seconds (Sampling) Chain 3: 14.4193 seconds (Total) Chain 3: SAMPLING FOR MODEL 'eDNA_lm' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 6.97737 seconds (Warm-up) Chain 4: 6.97542 seconds (Sampling) Chain 4: 13.9528 seconds (Total) Chain 4: * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [45s/52s] OK * DONE Status: 1 ERROR