--- re-building ‘SIPmg-vignette.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang-UBSAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/example scaling plot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17710 bytes Input file size = 17812 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13042 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13042 Output IDAT size = 13042 bytes (4668 bytes decrease) Output file size = 13120 bytes (4692 bytes = 26.34% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang-UBSAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/Plot atom fraction excess-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43479 bytes Input file size = 43617 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25905 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25905 Output IDAT size = 25905 bytes (17574 bytes decrease) Output file size = 25983 bytes (17634 bytes = 40.43% decrease) nativeRaster.c:60:21: runtime error: signed integer overflow: 162 * 16777216 cannot be represented in type 'int' #0 0x7fb848594a61 in nativeRaster /tmp/RtmpOV6qQi/R.INSTALL3a70612a758a2/EBImage/src/nativeRaster.c:60:21 #1 0x55c847afa760 in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8e760) #2 0x55c847b4950f in bcEval_loop eval.c #3 0x55c847b3234b in bcEval eval.c #4 0x55c847b38297 in bcEval_loop eval.c #5 0x55c847b3234b in bcEval eval.c #6 0x55c847b31ad4 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5ad4) #7 0x55c847b4eec8 in R_execClosure eval.c #8 0x55c847b4e3cb in applyClosure_core eval.c #9 0x55c847b31f25 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5f25) #10 0x55c847b55897 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe9897) #11 0x55c847b39f4a in bcEval_loop eval.c #12 0x55c847b3234b in bcEval eval.c #13 0x55c847b31ad4 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5ad4) #14 0x55c847b325d3 in forcePromise eval.c #15 0x55c847b31b9d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5b9d) #16 0x55c847b55d76 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe9d76) #17 0x55c847b98ab7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12cab7) #18 0x55c847b3a1cb in bcEval_loop eval.c #19 0x55c847b3234b in bcEval eval.c #20 0x55c847b31ad4 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5ad4) #21 0x55c847b325d3 in forcePromise eval.c #22 0x55c847b31b9d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5b9d) #23 0x55c847b325d3 in forcePromise eval.c #24 0x55c847b4b64f in getvar eval.c #25 0x55c847b37031 in bcEval_loop eval.c #26 0x55c847b3234b in bcEval eval.c #27 0x55c847b31ad4 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5ad4) #28 0x55c847b4eec8 in R_execClosure eval.c #29 0x55c847b4e3cb in applyClosure_core eval.c #30 0x55c847b31f25 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5f25) #31 0x55c847b55897 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe9897) #32 0x55c847b39f4a in bcEval_loop eval.c #33 0x55c847b3234b in bcEval eval.c #34 0x55c847b31ad4 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5ad4) #35 0x55c847b4eec8 in R_execClosure eval.c #36 0x55c847b4e3cb in applyClosure_core eval.c #37 0x55c847b31f25 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5f25) #38 0x55c847b4eec8 in R_execClosure eval.c #39 0x55c847b4e3cb in applyClosure_core eval.c #40 0x55c847b39752 in bcEval_loop eval.c #41 0x55c847b3234b in bcEval eval.c #42 0x55c847b31ad4 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5ad4) #43 0x55c847b4eec8 in R_execClosure eval.c #44 0x55c847b4e3cb in applyClosure_core eval.c #45 0x55c847b31f25 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc5f25) #46 0x55c847b83d77 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x117d77) #47 0x55c847b8587e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11987e) #48 0x55c847b858ea in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1198ea) #49 0x55c847a6dda7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7) #50 0x7fb8637135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #51 0x7fb8637136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #52 0x55c847a6dcc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior nativeRaster.c:60:21 ** Processing: /data/gannet/ripley/R/packages/tests-clang-UBSAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/show images-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9812 bytes Input file size = 9902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7363 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7363 Output IDAT size = 7363 bytes (2449 bytes decrease) Output file size = 7441 bytes (2461 bytes = 24.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang-UBSAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/show images-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9954 bytes Input file size = 10044 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7352 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7352 Output IDAT size = 7352 bytes (2602 bytes decrease) Output file size = 7430 bytes (2614 bytes = 26.03% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang-UBSAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/outlier sequin coverages-1.png 288x288 pixels, 8 bits/pixel, 178 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 1829 bytes Input file size = 2453 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1564 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1552 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1552 Output IDAT size = 1552 bytes (277 bytes decrease) Output file size = 1630 bytes (823 bytes = 33.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang-UBSAN/SIPmg.Rcheck/vign_test/SIPmg/vignettes/SIPmg-vignette_files/figure-html/better fit-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7513 bytes Input file size = 7591 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5574 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5574 Output IDAT size = 5574 bytes (1939 bytes decrease) Output file size = 5652 bytes (1939 bytes = 25.54% decrease) [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘SIPmg-vignette.Rmd’