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Type 'q()' to quit R. > pkgname <- "MHMM" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > library('MHMM') > > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') > cleanEx() > nameEx("MHMM-package") > ### * MHMM-package > > flush(stderr()); flush(stdout()) > > ### Name: MHMM-package > ### Title: Finite Mixture of Hidden Markov Models for accelerometer data > ### Aliases: MHMM-package MHMM > ### Keywords: package > > ### ** Examples > > data(accelero) > # To make the estimation <5 > res <- mhmm(accelero, K = 2, M = 4, nbcores = 1, nbinit = 5, iterSmall = 2) EMalgo.cpp:126:14: runtime error: inf is outside the range of representable values of type 'int' #0 0x7f615e14dce8 in EMalgo::Run() /data/gannet/ripley/R/packages/tests-clang-SAN/MHMM/src/EMalgo.cpp:126:14 #1 0x7f615e1f4d21 in EMmhmmCPP(Rcpp::S4_Impl, Rcpp::Vector<19, Rcpp::PreserveStorage>, double, double, double) /data/gannet/ripley/R/packages/tests-clang-SAN/MHMM/src/mhmm.cpp:15:8 #2 0x7f615e1ebd69 in _MHMM_EMmhmmCPP /data/gannet/ripley/R/packages/tests-clang-SAN/MHMM/src/RcppExports.cpp:20:34 #3 0x6e8731 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:613:17 #4 0x732e09 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1284:11 #5 0x8400e5 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7126:14 #6 0x82ab1e in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748:8 #7 0x893013 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #8 0x88ecbf in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844:16 #9 0x895b5f in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1985:8 #10 0x537c1f in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75:8 #11 0x9acce4 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1399:11 #12 0x83f403 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7146:15 #13 0x82ab1e in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748:8 #14 0x893013 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #15 0x88ecbf in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844:16 #16 0x84f9af in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7094:12 #17 0x82ab1e in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748:8 #18 0x893013 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #19 0x88ecbf in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844:16 #20 0x84f9af in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7094:12 #21 0x82ab1e in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:748:8 #22 0x893013 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #23 0x88ecbf in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1844:16 #24 0x82b558 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:871:12 #25 0x89f111 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2981:8 #26 0x82af08 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:823:12 #27 0x95be26 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:2 #28 0x95f370 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:316:11 #29 0x95f179 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1194:5 #30 0x95f4b2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1201:5 #31 0x4f30ba in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #32 0x7f616fe00b74 in __libc_start_main (/lib64/libc.so.6+0x27b74) (BuildId: 08df60634339b221bb854d4e10b7278cafde70c4) #33 0x43231d in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x43231d) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior EMalgo.cpp:126:14 in > plot(res, 1) Warning: Removed 24 rows containing missing values (geom_point). Warning: Use of `tabplot$Time` is discouraged. Use `Time` instead. Warning: Use of `tabplot$value` is discouraged. Use `value` instead. Warning: Use of `tabplot$variable` is discouraged. Use `variable` instead. Warning: Removed 96 rows containing missing values (position_stack). > > > > > cleanEx() > nameEx("accelero") > ### * accelero > > flush(stderr()); flush(stdout()) > > ### Name: accelero > ### Title: Accelerometer data > ### Aliases: accelero > ### Keywords: datasets > > ### ** Examples > > data(accelero) > > > > cleanEx() > nameEx("mhmm") > ### * mhmm > > flush(stderr()); flush(stdout()) > > ### Name: mhmm > ### Title: Mixture model of Hidden Markov Models. > ### Aliases: mhmm > > ### ** Examples > > data(accelero) > # To make the estimation <5 > res <- mhmm(accelero, K = 2, M = 4, nbcores = 1, nbinit = 5, iterSmall = 2) > plot(res, 1) Warning: Removed 24 rows containing missing values (geom_point). Warning: Use of `tabplot$Time` is discouraged. Use `Time` instead. Warning: Use of `tabplot$value` is discouraged. Use `value` instead. Warning: Use of `tabplot$variable` is discouraged. Use `variable` instead. Warning: Removed 96 rows containing missing values (position_stack). > > > > > > cleanEx() > nameEx("mhmmdata-class") > ### * mhmmdata-class > > flush(stderr()); flush(stdout()) > > ### Name: mhmmdata-class > ### Title: Constructor of 'mhmmdata' class > ### Aliases: mhmmdata-class > > ### ** Examples > > getSlots("mhmmdata") nobs yi nbseq nbtimeobs tstart "numeric" "list" "numeric" "list" "list" > > > > > cleanEx() > nameEx("mhmmparam-class") > ### * mhmmparam-class > > flush(stderr()); flush(stdout()) > > ### Name: mhmmparam-class > ### Title: Constructor of 'mhmmparam' class > ### Aliases: mhmmparam-class > > ### ** Examples > > getSlots("mhmmparam") K M A delta pi lambda "numeric" "numeric" "list" "numeric" "matrix" "list" > > > > > cleanEx() > nameEx("mhmmresults-class") > ### * mhmmresults-class > > flush(stderr()); flush(stdout()) > > ### Name: mhmmresults-class > ### Title: Constructor of 'mhmmresults' class > ### Aliases: mhmmresults-class > > ### ** Examples > > getSlots("mhmmresults") param data partitions probabilities "mhmmparam" "mhmmdata" "list" "list" meantimesperstates meanvalueperstates loglike bic "matrix" "numeric" "numeric" "numeric" > > > > > cleanEx() > nameEx("plot-methods") > ### * plot-methods > > flush(stderr()); flush(stdout()) > > ### Name: plot > ### Title: Plots of an instance of 'mhmmresults' > ### Aliases: plot plot,mhmmresults-method plot,mhmmresults,numeric-method > ### plot,mhmmresults,ANY-method > > ### ** Examples > > data(accelero) > # To make the estimation <5 > res <- mhmm(accelero, K = 2, M = 4, nbcores = 1, nbinit = 5, iterSmall = 2) > plot(res, 1) Warning: Removed 24 rows containing missing values (geom_point). Warning: Use of `tabplot$Time` is discouraged. Use `Time` instead. Warning: Use of `tabplot$value` is discouraged. Use `value` instead. Warning: Use of `tabplot$variable` is discouraged. Use `variable` instead. Warning: Removed 96 rows containing missing values (position_stack). > > > > > cleanEx() > nameEx("rdata.mhmm") > ### * rdata.mhmm > > flush(stderr()); flush(stdout()) > > ### Name: rdata.mhmm > ### Title: Generator > ### Aliases: rdata.mhmm > > ### ** Examples > > ech <- rdata.mhmm(25, 10) > res <- mhmm(ech$y, K = 2, M = 4, nbcores = 1, nbinit = 5, iterSmall = 2) > > > > ### *