--- re-building ‘GA.Rmd’ using rmarkdown /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/minus.h:336:15: runtime error: signed integer overflow: 51 - -2147483648 cannot be represented in type 'typename storage_type<13>::type' (aka 'int') #0 0x7f403d623933 in Rcpp::sugar::Minus_Primitive_Vector<13, true, Rcpp::Vector<13, Rcpp::PreserveStorage>>::operator[](long) const /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/minus.h:336:15 #1 0x7f403d623933 in void Rcpp::Vector<13, Rcpp::PreserveStorage>::import_expression>>(Rcpp::sugar::Minus_Primitive_Vector<13, true, Rcpp::Vector<13, Rcpp::PreserveStorage>> const&, long) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:1082:9 #2 0x7f403d5cfd63 in void Rcpp::Vector<13, Rcpp::PreserveStorage>::assign_object>>(Rcpp::sugar::Minus_Primitive_Vector<13, true, Rcpp::Vector<13, Rcpp::PreserveStorage>> const&, Rcpp::traits::integral_constant) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:1051:9 #3 0x7f403d5cfd63 in Rcpp::Vector<13, Rcpp::PreserveStorage>& Rcpp::Vector<13, Rcpp::PreserveStorage>::operator=>>(Rcpp::sugar::Minus_Primitive_Vector<13, true, Rcpp::Vector<13, Rcpp::PreserveStorage>> const&) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:245:9 #4 0x7f403d5cfd63 in rank_asR(Rcpp::Vector<14, Rcpp::PreserveStorage>, bool) /data/gannet/ripley/R/packages/tests-clang-UBSAN/GA/src/genope.cpp:21:23 #5 0x7f403d5f77a0 in optimProbsel_Rcpp(Rcpp::Vector<14, Rcpp::PreserveStorage>, double) /data/gannet/ripley/R/packages/tests-clang-UBSAN/GA/src/genope.cpp:1703:39 #6 0x7f403d5c3b09 in _GA_optimProbsel_Rcpp /data/gannet/ripley/R/packages/tests-clang-UBSAN/GA/src/RcppExports.cpp:466:34 #7 0x557c112f7e53 in R_doDotCall (/data/gannet/ripley/R/R-clang/bin/exec/R+0x8ee53) #8 0x557c11346daf in bcEval_loop eval.c #9 0x557c1132fbeb in bcEval eval.c #10 0x557c1132f374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374) #11 0x557c1134c768 in R_execClosure eval.c #12 0x557c1134bc6b in applyClosure_core eval.c #13 0x557c1132f7c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5) #14 0x557c11351d6d in do_set (/data/gannet/ripley/R/R-clang/bin/exec/R+0xe8d6d) #15 0x557c1132f59f in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc659f) #16 0x557c113531d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7) #17 0x557c113377ea in bcEval_loop eval.c #18 0x557c1132fbeb in bcEval eval.c #19 0x557c1132f374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374) #20 0x557c1132fe73 in forcePromise eval.c #21 0x557c1132f43d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d) #22 0x557c113536b6 in do_withVisible (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea6b6) #23 0x557c11396bc7 in do_internal (/data/gannet/ripley/R/R-clang/bin/exec/R+0x12dbc7) #24 0x557c11337a6b in bcEval_loop eval.c #25 0x557c1132fbeb in bcEval eval.c #26 0x557c1132f374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374) #27 0x557c1132fe73 in forcePromise eval.c #28 0x557c1132f43d in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc643d) #29 0x557c1132fe73 in forcePromise eval.c #30 0x557c11348eef in getvar eval.c #31 0x557c113348d1 in bcEval_loop eval.c #32 0x557c1132fbeb in bcEval eval.c #33 0x557c1132f374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374) #34 0x557c1134c768 in R_execClosure eval.c #35 0x557c1134bc6b in applyClosure_core eval.c #36 0x557c1132f7c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5) #37 0x557c113531d7 in do_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xea1d7) #38 0x557c113377ea in bcEval_loop eval.c #39 0x557c1132fbeb in bcEval eval.c #40 0x557c1132f374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374) #41 0x557c1134c768 in R_execClosure eval.c #42 0x557c1134bc6b in applyClosure_core eval.c #43 0x557c1132f7c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5) #44 0x557c1134c768 in R_execClosure eval.c #45 0x557c1134bc6b in applyClosure_core eval.c #46 0x557c11336ff2 in bcEval_loop eval.c #47 0x557c1132fbeb in bcEval eval.c #48 0x557c1132f374 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc6374) #49 0x557c1134c768 in R_execClosure eval.c #50 0x557c1134bc6b in applyClosure_core eval.c #51 0x557c1132f7c5 in Rf_eval (/data/gannet/ripley/R/R-clang/bin/exec/R+0xc67c5) #52 0x557c11381717 in Rf_ReplIteration (/data/gannet/ripley/R/R-clang/bin/exec/R+0x118717) #53 0x557c1138321e in run_Rmainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a21e) #54 0x557c1138328a in Rf_mainloop (/data/gannet/ripley/R/R-clang/bin/exec/R+0x11a28a) #55 0x557c1126ada7 in main (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1da7) #56 0x7f40509135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #57 0x7f40509136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03) #58 0x557c1126acc4 in _start (/data/gannet/ripley/R/R-clang/bin/exec/R+0x1cc4) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/sugar/operators/minus.h:336:15 [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘GA.Rmd’