* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-ASAN/terra.Rcheck’
* using R Under development (unstable) (2026-03-08 r89578)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)
    flang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-03-09 03:06:23 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘terra/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘terra’ version ‘1.9-1’
* package encoding: UTF-8
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘terra’ can be installed ... [982s/310s] OK
* used C compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
* used C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
* checking C++ specification ... INFO
  specified C++17
* checking package directory ... OK
* checking whether the package can be loaded ... [21s/21s] OK
* checking whether the package can be loaded with stated dependencies ... [21s/22s] OK
* checking whether the package can be unloaded cleanly ... [20s/21s] OK
* checking whether the namespace can be loaded with stated dependencies ... [21s/22s] OK
* checking whether the namespace can be unloaded cleanly ... [21s/22s] OK
* checking loading without being on the library search path ... [21s/21s] OK
* checking compiled code ... OK
* checking examples ... [137s/141s] ERROR
Running examples in ‘terra-Ex.R’ failed
The error most likely occurred in:

> ### Name: subst
> ### Title: replace cell values
> ### Aliases: subst subst,SpatRaster-method
> ### Keywords: spatial
> 
> ### ** Examples
> 
> r <- rast(ncols=5, nrows=5, xmin=0, xmax=1, ymin=0, ymax=1, crs="")
> r <- init(r, 1:6)
> x <- subst(r, 3, 7)
> x <- subst(r, 2:3, NA)
=================================================================
==90442==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x7b67aa18f458 at pc 0x7b479b30d34e bp 0x7ffd123903f0 sp 0x7ffd123903e8
READ of size 8 at 0x7b67aa18f458 thread T0
    #0 0x7b479b30d34d in SpatRaster::lookup_apply(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) /data/gannet/ripley/R/packages/tests-clang-ASAN/terra/src/raster_methods.cpp:79:15
    #1 0x7b479b30dad7 in SpatRaster::lookup_subst(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) /data/gannet/ripley/R/packages/tests-clang-ASAN/terra/src/raster_methods.cpp:146:9
    #2 0x7b479b0749e1 in Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&)::operator()(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) const /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Module.h:385:24
    #3 0x7b479b0745a2 in SEXPREC* Rcpp::internal::call_impl<Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&), SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&, 0, 1, 2, 3, 4, (void*)0>(Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) const&, SEXPREC**, Rcpp::internal::type_pack<SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>, Rcpp::traits::index_sequence<0, 1, 2, 3, 4>) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/internal/call.h:23:23
    #4 0x7b479b07425b in SEXPREC* Rcpp::call<Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&), SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>(Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) const&, SEXPREC**) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/internal/call.h:47:12
    #5 0x7b479b07425b in Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Module.h:387:20
    #6 0x7b479afe7bd9 in Rcpp::class_<SpatRaster>::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/module/class.h:241:23
    #7 0x7b479c1c87b8 in CppMethod__invoke_notvoid(SEXPREC*) (/data/gannet/ripley/R/test-clang/Rcpp/libs/Rcpp.so+0x477b8)
    #8 0x55c5fe63cddc in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576:11
    #9 0x55c5fe6edd77 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1260:9
    #10 0x55c5fe744149 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992:10
    #11 0x55c5fe6ed9b0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232:12
    #12 0x55c5fe73593c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:39
    #13 0x55c5fe734b01 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:16
    #14 0x55c5fe70f847 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324:16
    #15 0x55c5fe70f847 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8103:16
    #16 0x55c5fe6eef34 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515:16
    #17 0x55c5fe6ed471 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #18 0x55c5fe73593c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:39
    #19 0x55c5fe73f4ea in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2558:11
    #20 0x7f47acc67f40 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154:19
    #21 0x55c5fe803663 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348:13
    #22 0x55c5fe70a3bf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8067:12
    #23 0x55c5fe6eef34 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515:16
    #24 0x55c5fe6ed471 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #25 0x55c5fe73593c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:39
    #26 0x55c5fe734b01 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:16
    #27 0x55c5fe6ede96 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324:16
    #28 0x55c5fe6ede96 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280:12
    #29 0x55c5fe746fa5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581:8
    #30 0x55c5fe6ed9b0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232:12
    #31 0x55c5fe7bd9f1 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:23
    #32 0x55c5fe7c0220 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #33 0x55c5fe7c0220 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5
    #34 0x55c5fe7c02b2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5
    #35 0x55c5fe4c8d3c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #36 0x7f47ace12574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #37 0x7f47ace12627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #38 0x55c5fe3e07d4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17d4)

0x7b67aa18f458 is located 0 bytes after 8-byte region [0x7b67aa18f450,0x7b67aa18f458)
allocated by thread T0 here:
    #0 0x55c5fe485bb4 in malloc /home/runner/work/llvm-project/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:67:3
    #1 0x7f47aaa1f3fb in operator new(unsigned long) (/lib64/libstdc++.so.6+0x1f3fb) (BuildId: 51787ae23973475ac7373bc252b400c7229de8e7)
    #2 0x7b479b30daaf in std::__1::vector<double, std::__1::allocator<double>>::vector[abi:nqe220100](std::__1::vector<double, std::__1::allocator<double>> const&) /data/gannet2/ripley/Sources/LLVM/LLVM-22.1.0-Linux-X64/bin/../include/c++/v1/__vector/vector.h:264:5
    #3 0x7b479b30daaf in SpatRaster::lookup_subst(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) /data/gannet/ripley/R/packages/tests-clang-ASAN/terra/src/raster_methods.cpp:146:33
    #4 0x7b479b0749e1 in Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&)::operator()(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) const /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Module.h:385:24
    #5 0x7b479b0745a2 in SEXPREC* Rcpp::internal::call_impl<Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&), SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&, 0, 1, 2, 3, 4, (void*)0>(Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) const&, SEXPREC**, Rcpp::internal::type_pack<SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>, Rcpp::traits::index_sequence<0, 1, 2, 3, 4>) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/internal/call.h:23:23
    #6 0x7b479b07425b in SEXPREC* Rcpp::call<Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&), SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>(Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**)::'lambda'(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&) const&, SEXPREC**) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/internal/call.h:47:12
    #7 0x7b479b07425b in Rcpp::CppMethodImplN<false, SpatRaster, SpatRaster, std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&>::operator()(SpatRaster*, SEXPREC**) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/Module.h:387:20
    #8 0x7b479afe7bd9 in Rcpp::class_<SpatRaster>::invoke_notvoid(SEXPREC*, SEXPREC*, SEXPREC**, int) /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/module/class.h:241:23
    #9 0x7b479c1c87b8 in CppMethod__invoke_notvoid(SEXPREC*) (/data/gannet/ripley/R/test-clang/Rcpp/libs/Rcpp.so+0x477b8)
    #10 0x55c5fe6edd77 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1260:9
    #11 0x55c5fe744149 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2992:10
    #12 0x55c5fe6ed9b0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232:12
    #13 0x55c5fe73593c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:39
    #14 0x55c5fe734b01 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:16
    #15 0x55c5fe70f847 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324:16
    #16 0x55c5fe70f847 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8103:16
    #17 0x55c5fe6eef34 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515:16
    #18 0x55c5fe6ed471 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #19 0x55c5fe73593c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:39
    #20 0x55c5fe73f4ea in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2558:11
    #21 0x7f47acc67f40 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154:19
    #22 0x55c5fe803663 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348:13
    #23 0x55c5fe70a3bf in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8067:12
    #24 0x55c5fe6eef34 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515:16
    #25 0x55c5fe6ed471 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #26 0x55c5fe73593c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:39
    #27 0x55c5fe734b01 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:16
    #28 0x55c5fe6ede96 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324:16
    #29 0x55c5fe6ede96 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280:12
    #30 0x55c5fe746fa5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3581:8
    #31 0x55c5fe6ed9b0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232:12
    #32 0x55c5fe7bd9f1 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:23
    #33 0x55c5fe7c0220 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #34 0x55c5fe7c0220 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5

SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-ASAN/terra/src/raster_methods.cpp:79:15 in SpatRaster::lookup_apply(std::__1::vector<double, std::__1::allocator<double>>, std::__1::vector<double, std::__1::allocator<double>>, bool, double, SpatOptions&)
Shadow bytes around the buggy address:
  0x7b67aa18f180: fa fa fd fa fa fa 00 fa fa fa fd fa fa fa fd fd
  0x7b67aa18f200: fa fa fd fa fa fa fd fa fa fa fd fa fa fa fd fd
  0x7b67aa18f280: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7b67aa18f300: fa fa 00 fa fa fa fd fa fa fa fd fa fa fa fa fa
  0x7b67aa18f380: fa fa fd fa fa fa fa fa fa fa fd fa fa fa fa fa
=>0x7b67aa18f400: fa fa fa fa fa fa 00 00 fa fa 00[fa]fa fa fa fa
  0x7b67aa18f480: fa fa fa fa fa fa fa fa fa fa fd fa fa fa fd fd
  0x7b67aa18f500: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7b67aa18f580: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7b67aa18f600: fa fa fa fa fa fa fd fd fa fa fa fa fa fa fd fd
  0x7b67aa18f680: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fd fd
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
==90442==ABORTING
* checking tests ... [49s/49s] OK
  Running ‘tinytest.R’ [48s/48s]
* DONE
Status: 1 ERROR